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Zarr support #190

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Zarr support #190

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Commits on May 6, 2024

  1. WIP

    @keller-mark
    keller-mark committed May 6, 2024
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  2. More tests passing

    @keller-mark
    keller-mark committed May 6, 2024
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  3. Fix df read bug

    @keller-mark
    keller-mark committed May 6, 2024
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Commits on May 7, 2024

  1. More tests passing after fixing zero-dimensional get bug in pizzarr

    @keller-mark
    keller-mark committed May 7, 2024
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  2. WIP: writing

    @keller-mark
    keller-mark committed May 7, 2024
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  3. Fix more tests

    @keller-mark
    keller-mark committed May 7, 2024
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  4. Zarr df writing

    @keller-mark
    keller-mark committed May 7, 2024
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  5. WIP: ZarrAnnData class

    @keller-mark
    keller-mark committed May 7, 2024
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  6. Tests passing

    @keller-mark
    keller-mark committed May 7, 2024
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Commits on May 8, 2024

  1. Tests that compare h5ad to zarr

    @keller-mark
    keller-mark committed May 8, 2024
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Commits on May 17, 2024

  1. Use Rarr to read full numeric arrays

    @keller-mark
    keller-mark committed May 17, 2024
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Commits on Jun 18, 2024

  1. Fix bugs. Add test for from_SingleCellExperiment with Zarr

    @keller-mark
    keller-mark committed Jun 18, 2024
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Commits on Jun 20, 2024

  1. Add a to_dense param to ZarrAnnData constructor. Add overwrite params… 

    … internally.
    @keller-mark
    keller-mark committed Jun 20, 2024
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  2. Update

    @keller-mark
    keller-mark committed Jun 20, 2024
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  3. Backwards dense/sparse

    @keller-mark
    keller-mark committed Jun 20, 2024
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Commits on Nov 1, 2024

  1. Merge branch 'keller-mark/zarr' of https://github.com/keller-mark/ann… 

    …dataR into keller-mark/zarr
    @Artur-man
    Artur-man committed Nov 1, 2024
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  2. Merge branch 'keller-mark/zarr' into zarr

    @Artur-man
    Artur-man committed Nov 1, 2024
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  3. Simplify how obs and var names handled in ZarrAnnData (similar to scv… 

    …erse#171)
    @Artur-man
    Artur-man committed Nov 1, 2024
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  4. update extdata and documentation

    @Artur-man
    Artur-man committed Nov 1, 2024
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Commits on Nov 2, 2024

  1. fix set/get zarr _index, update text example.zarr and update tests si… 

    …milar to HDF5AnnData
    @Artur-man
    Artur-man committed Nov 2, 2024
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Commits on Nov 5, 2024

  1. Merge pull request #5 from Artur-man/zarr 

    Simplify how obs and var names handled in ZarrAnnData
    @keller-mark
    keller-mark authored Nov 5, 2024
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  2. Merge

    @keller-mark
    keller-mark committed Nov 5, 2024
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  3. Fix test

    @keller-mark
    keller-mark committed Nov 5, 2024
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  4. Revert unnecessary changes

    @keller-mark
    keller-mark committed Nov 5, 2024
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  5. Formatting

    @keller-mark
    keller-mark committed Nov 5, 2024
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  6. Merge pull request #6 from keller-mark/keller-mark/zarr-2 

    More zarr-related changes
    @keller-mark
    keller-mark authored Nov 5, 2024
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  7. Add comments

    @keller-mark
    keller-mark committed Nov 5, 2024
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  8. Merge pull request #7 from keller-mark/keller-mark/comments 

    Update comments
    @keller-mark
    keller-mark authored Nov 5, 2024
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Commits on Nov 6, 2024

  1. remove unnecessary example zarr store

    @Artur-man
    Artur-man committed Nov 6, 2024
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  2. lintr and R check for zarr related utilities and functions, updated s… 

    …ome documentation
    @Artur-man
    Artur-man committed Nov 6, 2024
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  3. add pizzarr to Suggests and README

    @Artur-man
    Artur-man committed Nov 6, 2024
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