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% please use misc for datasets
@misc{dataset,
author = "Author1 LastName1 and Author2 LastName2 and Author3 LastName3",
title = "Data Title",
year = "2011",
doi = "10.000/55555",
URL = "http://www.frontiersin.org/",
}
@article{tarasov2011phylogenetic,
title={Phylogenetic analyses reveal reliable morphological markers to classify mega-diversity in Onthophagini dung beetles (Coleoptera: Scarabaeidae: Scarabaeinae)},
author={Tarasov, Sergey I and Solodovnikov, Alexey Y},
journal={Cladistics},
volume={27},
number={5},
pages={490--528},
year={2011},
publisher={Wiley Online Library},
doi={10.1111/j.1096-0031.2011.00351.x}
}
@article{tarasov2015innovative,
title={Innovative Bayesian and parsimony phylogeny of dung beetles (Coleoptera, Scarabaeidae, Scarabaeinae) enhanced by ontology-based partitioning of morphological characters},
author={Tarasov, Sergei and G{\'e}nier, Francois},
journal={Plos one},
volume={10},
number={3},
pages={e0116671},
year={2015},
publisher={Public Library of Science San Francisco, CA USA}
}
@article{genier2017digitonthophagus,
title={\textit{Digitonthophagus} Balthasar, 1959: taxonomy, systematics, and morphological phylogeny of the genus revealing an African species complex (Coleoptera: Scarabaeidae: Scarabaeinae)},
author={G{\'e}nier, Francois and Moretto, Philippe},
journal={Zootaxa},
volume={4248},
number={1},
pages={1--110},
year={2017}
}
@article{cambefort1979donnees,
title={Donn{\'e}es pr{\'e}liminaires sur la taxonomie des Caccobius Thomson s. lat.(Coleoptera Scarabaeoidea Scarabaeinae)},
author={Cambefort, Yves},
journal={Nouvelle Revue d’Entomologie},
volume={9},
pages={119--128},
year={1979}
}
@article{cambefort1981amietina,
title={Amietina, un nouveau genre africain d'Onthophagini (Coleoptera Scarabaeoidea Scarabaeinae)},
author={Cambefort, Yves},
journal={Nouvelle Revue d'Entomologie},
year={1981},
volume={11},
number={2},
pages={143--147}
}
@article{branco1988deux,
title={Deux nouvelles esp{\`e}ces de Amietina Cambefort de l'Afrique orientale (Coleoptera Scarabaeidae)},
author={Branco, Trist\tilde{a}o},
journal={Bollettino della Societ{\`a} Entomologica Italiana},
volume={120},
number={3},
pages={201--205},
year={1989}
}
@inproceedings{branco1989etude,
title={{\'E}tude de Cambefortius gen. n. et diagnose pr{\'e}liminaire de quatre nouveaux genres d'Onthophagini afrotropicaux (Coleoptera: Scarabaeidae)},
author={Branco, Trist\tilde{a}o},
booktitle={Annales de la Soci{\'e}t{\'e} entomologique de France},
volume={25},
number={3},
pages={249--263},
year={1989}
}
@article{branco1992essai,
title={Essai de revision des genres du ‘groupe’ Stiptopodius: les genres Pinacotarsus Harold, Heteroclitopus Peringuey, Dorbignyolus Branco, Eusaproecius Branco, Stiptocnemis Branco, Falcidius nov., Krikkenius nov. et Pinacopodius nov.(Coleoptera Scarabaeidae)},
author={Branco, T},
journal={Memorie della Societ{\`a} Entomologica Italiana},
volume={70},
number={1991},
pages={103--162},
year={1992}
}
@inproceedings{genier2019endophallites,
title={Endophallites: a proposed neologism for naming the sclerotized elements of the insect endophallus (Arthropoda: Insecta)},
author={G{\'e}nier, Fran{\c{c}}ois},
booktitle={Annales de la Soci{\'e}t{\'e} entomologique de France (NS)},
volume={55},
number={6},
pages={482--484},
year={2019},
organization={Taylor \& Francis}
}
@book{lawrence2013australian,
title={Australian beetles volume 1: morphology, classification and keys},
author={Lawrence, John and Slipinski, Adam},
volume={1},
year={2013},
publisher={Csiro Publishing}
}
@article{orbigny1913synopsis,
title={Synopsis des onthophagides d'Afrique},
author={d'Orbigny, H},
year={1913},
pages={1--608},
journal={Annales de la Société Entomologique de France}
}
@article{branco1995essai,
title={Essai de r{\'e}vision des genres du {\guillemotleft}groupe{\guillemotright} Stiptopodius: Le genre Pseudosaproecius Balthasar (Coleoptera: Scarabaeidae)},
author={Branco, T},
journal={Memorie della Societ{\`a} Entomologica Italiana},
volume={73},
number={1994},
pages={195--230},
year={1995}
}
@article{tarasov2016multigene,
title={Multigene phylogenetic analysis redefines dung beetles relationships and classification (Coleoptera: Scarabaeidae: Scarabaeinae)},
author={Tarasov, Sergei and Dimitrov, Dimitar},
journal={BMC evolutionary biology},
volume={16},
number={1},
pages={1--19},
year={2016},
publisher={Springer}
}
@article{breeschoten2016phylogenetics,
title={Phylogenetics and biogeography of the dung beetle genus Onthophagus inferred from mitochondrial genomes},
author={Breeschoten, Thijmen and Doorenweerd, Camiel and Tarasov, Sergei and Vogler, Alfried P},
journal={Molecular Phylogenetics and Evolution},
volume={105},
pages={86--95},
year={2016},
publisher={Elsevier}
}
@article{scholtz1987revision,
title={A revision of the African Cathonina (Coleoptera: Scarabaeidae: Scarabaeinae)},
author={Scholtz, CH and Howden, HF},
journal={Journal of the Entomological Society of Southern Africa},
volume={50},
number={1},
pages={75--119},
year={1987}
}
@article{burgess2007biological,
title={The biological importance of the Eastern Arc Mountains of Tanzania and Kenya},
author={Burgess, NDet and Butynski, Thomas M and Cordeiro, Norbert J and Doggart, NH and Fjelds{\aa}, Jon and Howell, KM and Kilahama, Felician B and Loader, SP and Lovett, Jonathan Cranidge and Mbilinyi, B and others},
journal={Biological conservation},
volume={134},
number={2},
pages={209--231},
year={2007},
publisher={Elsevier}
}
@misc{schoolmeesters2021scarabs,
title={Scarabs: World Scarabaeidae Database (version 2024-06-03)},
author={Schoolmeesters, P},
year={2024},
doi = {https://doi.org/10.48580/dg9ld-38g}
}
Cambefort, Y. (1986). . 22(2):304-306.
@article{cambefort1986une,
title={Une nouvelle et remarquable espèce d’Onthophagus d’Afrique occidentale},
author={Cambefort, Y.},
journal={Annales De La Société Entomologique De France},
volume={22},
number={2},
pages={304--306},
year={1986},
url={http://gallica.bnf.fr/ark:/12148/bpt6k6149714s/f313}
}
@article{stals2024hathoronthophagus,
title={Hathoronthophagus, new replacement name for Hathor Deschodt, 2023, preoccupied genus-group name of a putatively myrmecophilic dung beetle (Scarabaeidae: Scarabaeinae: Onthophagini)},
author={Stals, Riaan and Daniel, Gimo M and Deschodt, Christian M},
journal={Zootaxa},
volume={5397},
number={3},
pages={449--450},
year={2024},
doi={http://dx.doi.org/10.11646/zootaxa.5397.3.10}
}
@article{philips2016phylogeny,
title={Phylogeny of the Oniticellini and Onthophagini dung beetles (Scarabaeidae, Scarabaeinae) from morphological evidence},
author={Philips, T Keith},
journal={ZooKeys},
number={579},
pages={9},
year={2016},
publisher={Pensoft Publishers}
}
@article{montanaro2024computable,
author = {Giulio Montanaro and James P. Balhoff and Jennifer C. Girón and Max Söderholm and Sergei Tarasov},
title = {Computable species descriptions and nanopublications: applying ontology-based technologies to dung beetles (Coleoptera, Scarabaeinae)},
volume = {12},
number = {},
year = {2024},
doi = {10.3897/BDJ.12.e121562},
publisher = {Pensoft Publishers},
abstract = {Taxonomy has long struggled with analysing vast amounts of phenotypic data due to computational and accessibility challenges. Ontology-based technologies provide a framework for modelling semantic phenotypes that are understandable by computers and compliant with FAIR principles. In this paper, we explore the use of Phenoscript, an emerging language designed for creating semantic phenotypes, to produce computable species descriptions. Our case study centers on the application of this approach to dung beetles (Coleoptera, Scarabaeinae).We illustrate the effectiveness of Phenoscript for creating semantic phenotypes. We also demonstrate the ability of the Phenospy python package to automatically translate Phenoscript descriptions into natural language (NL), which eliminates the need for writing traditional NL descriptions. We introduce a computational pipeline that streamlines the generation of semantic descriptions and their conversion to NL. To demonstrate the power of the semantic approach, we apply simple semantic queries to the generated phenotypic descriptions. This paper addresses the current challenges in crafting semantic species descriptions and outlines the path towards future improvements. Furthermore, we discuss the promising integration of semantic phenotypes and nanopublications, as emerging methods for sharing scientific information. Overall, our study highlights the pivotal role of ontology-based technologies in modernising taxonomy and aligning it with the evolving landscape of big data analysis and FAIR principles.},
issn = {1314-2836},
pages = {e121562},
URL = {https://doi.org/10.3897/BDJ.12.e121562},
eprint = {https://doi.org/10.3897/BDJ.12.e121562},
journal = {Biodiversity Data Journal}
}
@Manual{QGIS_software,
title = {QGIS Geographic Information System v. 3.30.0},
author = {{QGIS Development Team}},
organization = {Open Source Geospatial Foundation},
year = {2009},
url = {http://qgis.osgeo.org},
}
Olson, D. M., Dinerstein, E., Wikramanayake, E. D., Burgess, N. D., Powell, G. V. N., Underwood, E. C., D'Amico, J. A., Itoua, I., Strand, H. E., Morrison, J. C., Loucks, C. J., Allnutt, T. F., Ricketts, T. H., Kura, Y., Lamoreux, J. F., Wettengel, W. W., Hedao, P., Kassem, K. R. 2001. Terrestrial ecoregions of the world: a new map of life on Earth. Bioscience 51(11):933-938.
@article{olson2001terrestrial,
title={Terrestrial ecoregions of the world: a new map of life on Earth},
author={Olson, D. M., Dinerstein, E., Wikramanayake, E. D., Burgess, N. D., Powell, G. V. N., Underwood, E. C., D'Amico, J. A., Itoua, I., Strand, H. E., Morrison, J. C., Loucks, C. J., Allnutt, T. F., Ricketts, T. H., Kura, Y., Lamoreux, J. F., Wettengel, W. W., Hedao, P., Kassem, K. R.},
journal={Bioscience},
volume={51},
number={9},
pages={933--938},
year={2001}
}
@incollection{kuhn2013broadening,
author = "Kuhn, T., Barbano, P. E., Nagy, M. L., & Krauthammer, M.",
title = "Broadening the scope of nanopublications",
booktitle = "The Semantic Web: Semantics and Big Data: 10th International Conference, ESWC 2013, Montpellier, France, May 26-30, 2013. Proceedings 10",
year = 2013,
publisher = "Springer",
address = "Berlin Heidelberg",
pages = "487--501"
}
@article{miko2021semantically,
title={A semantically enriched taxonomic revision of Gryonoides Dodd, 1920 (Hymenoptera, Scelionidae), with a review of the hosts of Teleasinae},
author={Mik{\'o}, Istv{\'a}n and Masner, Lubomir and Ulmer, Jonah M and Raymond, Monique and Hobbie, Julia and Tarasov, Sergei and Margar{\'\i}a, Cecilia Beatriz and Seltmann, Katja C and Talamas, Elijah J},
journal={Journal of Hymenoptera Research},
volume={87},
pages={523--573},
year={2021},
publisher={Pensoft Publishers}
}
@article{montanaro2024beyond,
title={Beyond natural language: an ontology-based description of a new Scarabaeus dung beetle from Madagascar (Coleoptera, Scarabaeinae)},
author={Montanaro, Giulio and Tarasov, Sergei},
journal={Biodiversity Data Journal},
volume={12},
pages={e134364},
year={2024},
publisher={Pensoft Publishers}
}
@article{moretto2010onthophagus,
title={Onthophagus, fruits and diplopods relationship in Senegal},
author={Moretto, Philippe},
journal={Catharsius La Revue},
volume={2},
pages={11--18},
year={2010}
}
Scarabaeidae de l’Afrique de l’Ouest : les noms du niveau genre et leurs espèces types (Coleoptera) :
@article{branco2014scarabaeidae,
title={Scarabaeidae de l’Afrique de l’Ouest : les noms du niveau genre et leurs espèces types (Coleoptera)},
author={Branco, Tristão},
journal={Catharsius La Revue},
volume={4},
pages={9--25},
year={2011}
}
@article{moretto2010bayanga,
title={Les Scarabéides coprophages de Bayanga en République Centrafricaine (Coleoptera, Scarabaeidae)},
author={Moretto, Philippe},
journal={Bulletin de la Société entomologique de France},
volume={115},
number={4},
pages={455--477},
year={2010}
}
@incollection{cambefort2003nimba,
author = "Cambefort, Y. and Bordat, P.",
title = "Coléoptères Scarabaeidae s. str., Aphodiidae et Ceratocanthidae du mont Nimba et des régions limitrophes",
booktitle = "Le peuplement animal du mont Nimba (Guinée, Côte d’Ivoire, Liberia)",
year = 2003,
publisher = "Mémoires du Muséum national d’Histoire naturelle 190",
address = "Paris",
pages = "551--580"
}
@book{davis2008african,
title={The African dung beetle genera},
author={Davis, Adrian Louis Victor and Frolov, Andrey V and Scholtz, Clarke H},
year={2008},
publisher={Protea Book House},
address={Pretoria}
}
@article{moretto2010bayanga,
title={Les Scarabéides coprophages de Bayanga en République Centrafricaine (Coleoptera, Scarabaeidae)},
author={Moretto, Philippe},
journal={Bulletin de la Société entomologique de France},
volume={115},
number={4},
pages={455--477},
year={2010}
}
@article{cambefort1984etude,
title={{\'E}tude {\'e}cologique des col{\'e}opt{\`e}res Scarabaeidae de C{\^o}te d'Ivoire},
author={Cambefort, Yves},
journal={Travaux des chercheurs de la Station de Lamto (RCI)},
volume={3},
year={1984}
}
@article{janssens1937revision,
title={Revision des onitides},
author={Janssens, Andr{\'e}},
journal={Mem. Mus. roy. Hist. nat. Belg.,(2)},
volume={11},
pages={pls--1},
year={1937}
}
@article{krikken1977notes,
title={Notes on African Onitini, mainly from southeastern Kenya (Coleoptera: Scarabaeidae)},
author={Krikken, Jan},
journal={Zoologische Mededelingen},
volume={51},
number={9},
pages={141--170},
year={1977}
}
@article{genier2019new,
title={A new species of Onitis Fabricius, 1798 from south-eastern Africa (Coleoptera, Scarabaeidae, Scarabaeinae, Onitini)},
author={G{\'e}nier, Fran{\c{c}}ois and Moretto, Philippe},
journal={ZooKeys},
volume={900},
pages={23},
year={2019},
publisher={Pensoft Publishers}
}
@article{scholtz1987revision,
title={A revision of the African Cathonina (Coleoptera: Scarabaeidae: Scarabaeinae)},
author={Scholtz, CH and Howden, HF},
journal={Journal of the Entomological Society of Southern Africa},
volume={50},
number={1},
pages={75--119},
year={1987}
}
@article{palestrini1992sistematica,
title={Sistematica e zoogeograf{\'\i}a del genere Onthophagus sottogenere Proagoderus Lansberge (Coleoptera Scarabaeoidea)},
author={Palestrini, Claudia},
journal={Memorie della Societ{\`a} entomologica italiana},
volume={71},
number={1},
year={1992},
pages={3--358}
}
@article{janssens1937notes,
title={Notes sur les Onitides africains. 2e Note},
author={Janssens, A.},
journal={Bulletin du Musée royal d'Histoire naturelle de Belgique},
volume={13},
number={41},
year={1937},
pages={1--6}
}
@article{giron2024AISM,
title={Ontology for the Anatomy of the Insect SkeletoMuscular system (AISM). v2024-06-20},
author={Girón, J.C. and Mikó, I. and Gonzalez-Montaña, L.A. and Montanaro, G. and Tarasov, S. and Matentzoglu, N.},
journal={Zenodo},
year={2024},
doi={https://doi.org/10.5281/zenodo.4660322}
}
@article{rossini2024towards,
title={Towards computable taxonomic knowledge: Leveraging nanopublications for sharing new synonyms in the Madagascan genus Helictopleurus (Coleoptera, Scarabaeinae)},
author={Rossini, Michele and Montanaro, Giulio and Montreuil, Olivier and Tarasov, Sergei},
journal={Biodiversity Data Journal},
volume={12},
pages={e120304},
year={2024},
publisher={Pensoft Publishers}
}
@article{josso2008unidentis,
title={Nouveau genre et nouvelle espèce d'Onthophagini du Malawi
(Coleoptera, Scarabaeidae)},
author={Josso, J.-F. and Prévost, P.},
journal={Les Cahiers Magellanes Hors Serie},
volume={24},
pages={1--4},
year={2008}
}
@article{montanaro2024microallopatric,
title={Microallopatric speciation in the relict dung beetle genus Grebennikovius (Coleoptera: Scarabaeidae) in the Eastern Arc Mountains},
author={Montanaro, Giulio and Grebennikov, Vasily V and Rossini, Michele and Grapputo, Alessandro and Ruzzier, Enrico and Tarasov, Sergei},
journal={Insect Systematics and Diversity},
volume={8},
number={2},
pages={2},
year={2024},
publisher={Oxford University Press US}
}
@article{philips2023dung,
title={Dung beetles (Scarabaeidae: Scarabaeinae) attracted to carrion in Ghana, West Africa and evidence for adult food source plasticity},
author={Philips, Keith and Sukhdeo, Christie A and Peck, Stewart B},
journal={African Entomology},
volume={31},
pages={1--7},
year={2023},
publisher={Copyright held by authors of the article (s).}
}
@article{cambefort1985coleopteres,
title={Les coleopt{\`e}res Scarabaeidae du parc national de Ta{\"\i} (C{\^o}te d'Ivoire)},
author={CAMBEFORT, Y},
journal={Revue fran{\c{c}}aise d'entomologie (1979)},
volume={7},
number={5},
pages={337--342},
year={1985}
}
@inbook{cambefort1991dung,
author = {Cambefort, Yves and Walter, Philippe},
title = {Dung beetle ecology},
chapter = {Dung beetles in tropical forests in Africa},
pages = {198--210},
year = {1991},
publisher = {Princeton University Press},
address = {Princeton, NJ},
}
@article{nummelin1989dung,
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@misc{giron2024colao,
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title = {The Coleoptera Anatomy Ontology (COLAO) (Version v2024-06-20)},
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title={Nouveaux Scarabaeidae africains appartenant aux genres Lophodonitis Janssens, 1938 et Copris M{\"u}ller, 1764. Notes sur quelques Onitis Fabricius, 1798 (Coleoptera, Scarabaeidae, Scarabaeinae)},
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@article{roggero2019phylogenetic,
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@article{grebennikov2019miocene,
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@article{grebennikov2021sky,
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@article{daniel2023dung,
title={Dung beetle fauna from Mount Mabu, Mozambique. Part 1: A new species of Onthophagus Latreille, 1802, and a checklist of species belonging to group 3 (d’Orbigny 1913)(Coleoptera: Scarabaeidae: Scarabaeinae)},
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