.pre-commit-config.yaml

# Copyright (C) 2024  C-PAC Developers

# This file is part of C-PAC.

# C-PAC is free software: you can redistribute it and/or modify it under
# the terms of the GNU Lesser General Public License as published by the
# Free Software Foundation, either version 3 of the License, or (at your
# option) any later version.

# C-PAC is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
# FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public
# License for more details.

# You should have received a copy of the GNU Lesser General Public
# License along with C-PAC. If not, see <https://www.gnu.org/licenses/>.
fail_fast: false

repos:
  - repo: https://github.com/astral-sh/ruff-pre-commit
    rev: v0.3.2
    hooks:
    - id: ruff
      args: [--fix]
    - id: ruff-format

  - repo: https://github.com/pre-commit/pre-commit-hooks
    rev: v4.5.0
    hooks:
    - id: check-case-conflict
    - id: end-of-file-fixer
      exclude: '.*\.?sv|.*\.pkl(z)?'
    - id: mixed-line-ending
      args:
      - --fix=lf
    - id: trailing-whitespace
      exclude: '.*\.tsv'
    - id: check-json
    - id: pretty-format-json
      args:
      - --autofix
      - --indent=4
      - --no-sort-keys
    - id: check-merge-conflict
    - id: check-yaml
    - id: check-toml

  - repo: https://github.com/macisamuele/language-formatters-pre-commit-hooks
    rev: v2.12.0
    hooks:
    # pretty-format-yaml is disabled because it doesn't support the "YAML" directive https://yaml.org/spec/1.1/#id895631
    # - id: pretty-format-yaml
    #   args:
    #   - --autofix
    #   - --indent=2
    - id: pretty-format-toml
      exclude: ^poetry.lock$
      args:
      - --autofix
      - --indent=2
      - --no-sort

  - repo: local
    hooks:
      - id: autoversioning
        name: Update Dockerfiles and version comments
        entry: .github/scripts/autoversioning.sh
        language: script
        files: '.*Dockerfile$|.*\.yaml$|^CPAC/info\.py$'
      - id: update-yaml-comments
        name: Update YAML comments
        entry: CPAC/utils/configuration/yaml_template.py
        language: python
        files: '^CPAC/resources/configs/pipeline_config_.*\.ya?ml'
        additional_dependencies:
          - "click"
          - "nipype"
          - "pathvalidate"
          - "pyyaml"
          - "voluptuous"