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GenomicsDBImport: large intervals can not be processed #3

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shalabhsuman opened this issue Nov 6, 2018 · 1 comment
Open

GenomicsDBImport: large intervals can not be processed #3

shalabhsuman opened this issue Nov 6, 2018 · 1 comment

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@shalabhsuman
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Currently, GenomicsDBImport has no way to take in large interval/BED files to process the gvcf merging step. One option would be to perform it on individual chromosomes. Will need to investigate more
@shalabhsuman
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Found this on GATK forum about this issue:
broadinstitute/gatk#3269

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