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---
title: "Iterating well with purrr"
author: "Shannon Pileggi"
footer: "[Iterating well with purrr](https://github.com/shannonpileggi/iterating-well-with-purrr)"
logo: "img/purrr-logo.png"
format:
revealjs:
theme: [night, slides.scss]
highlight-style: a11y
transition: fade
slide-number: true
chalkboard: true
editor: visual
execute:
freeze: auto
---
```{r}
library(tidyverse)
library(countdown)
library(repurrrsive)
library(gapminder)
```
```{r font-awesome-color}
# fill for font awesome icons
fa_fill <- "#C7B41D"
```
# Introduction
## Shannon Pileggi
`r fontawesome::fa("link", fill = fa_fill)` [pipinghotdata.com](https://www.pipinghotdata.com/)
`r fontawesome::fa("twitter", fill = fa_fill)` [\@PipingHotData](https://twitter.com/PipingHotData)
`r fontawesome::fa("linkedin", fill = fa_fill)` [linkedin.com/in/shannon-m-pileggi/](https://www.linkedin.com/in/shannon-m-pileggi/)
`r fontawesome::fa("github", fill = fa_fill)` [github.com/shannonpileggi](https://github.com/shannonpileggi/)
`r fontawesome::fa("paper-plane", fill = fa_fill)` [shannon\@pipinghotdata.com](mailto:shannon@pipinghotdata.com)
## Acknowledgements
<br> Workshop materials have been adapted from the 2020 RStudio [What They Forgot To Teach You About R](https://rstats-wtf.github.io/wtf-2020-rsc/) Workshop.
<br> <br> This work is licensed under a [Creative Commons Attribution-ShareAlike 4.0 International License](https://creativecommons.org/licenses/by-sa/4.0/) (CC BY-SA4.0).
## Checklist
<br>
`r fontawesome::fa("check", fill = fa_fill)` R installed?
Pretty recent?
Current version 4.2.0
`r fontawesome::fa("check", fill = fa_fill)` RStudio installed?
I'm on 2022.02.3+492
`r fontawesome::fa("check", fill = fa_fill)` Have these packages?
`tidyverse` (includes `purrr`); `repurrrsive`
## Additional resources {.smaller}
- Jenny Bryan purrr tutorial<br> <https://jennybc.github.io/purrr-tutorial/>
- Charlotte Wickham purrr tutorial<br> <https://github.com/cwickham/purrr-tutorial>
- Jenny Bryan row-oriented workflows workshop<br> <https://github.com/jennybc/row-oriented-workflows>
- Advanced R by Hadley Wickham, Ch 9 Functionals<br> <https://adv-r.hadley.nz/functionals.html>
- The Joy of Functional Programming (for Data Science)<br> webinar by Hadley Wickham <br> <https://www.youtube.com/watch?v=bzUmK0Y07ck>
# Syntax aside
## Pipes
- 2014+ magrittr pipe `%>%`
- 2021+ (R $\geq$ 4.1.0) native R pipe `|>`
2022 Isabella Velásquez Understanding the native R pipe \|\> <https://ivelasq.rbind.io/blog/understanding-the-r-pipe/>
. . .
<brshort>
::: columns
::: {.column width="50%"}
```{r echo=TRUE, eval=FALSE}
whatever(arg1, arg2, arg3, ...)
arg1 |>
whatever(arg2, arg3)
```
:::
::: {.column width="5%"}
:::
::: {.column width="45%"}
```{r echo=TRUE, eval=FALSE}
mean(0:10)
0:10 |>
mean()
```
:::
:::
::: footer
Change `CTRL + Shift + M` shortcut to native pipe:
`Tools -> Global Options -> Code -> `
`Editing -> check Use Native Pipe Operator`
:::
## R for Data Science: Ch 18 Pipes
![](img/foo-foo.png)
::: footer
<https://r4ds.had.co.nz/pipes.html#pipes>
:::
## Namespacing
`dplyr::select()`
- tells R explicitly to use the function `select` from the package `dplyr`
- can help to avoid name conflicts (e.g., `MASS::select()`)
- does not require `library(dplyr)`
. . .
::: columns
::: {.column width="45%"}
```{r echo=TRUE, eval=FALSE}
library(dplyr)
select(mtcars, mpg, cyl)
mtcars |>
select(mpg, cyl)
```
:::
::: {.column width="5%"}
:::
::: {.column width="50%"}
```{r echo=TRUE, eval=FALSE}
# library(dplyr) not needed
dplyr::select(mtcars, mpg, cyl)
mtcars |>
dplyr::select(mpg, cyl)
```
:::
:::
# Iterating without purrr
## Gapminder example
```{r, echo = TRUE}
library(gapminder)
library(tidyverse)
gapminder
```
::: footer
Hans Rosling discusses Gapminder data<br> <https://www.youtube.com/watch?v=hVimVzgtD6w>
:::
## Gapminder life expectancy
```{r}
gapminder |>
ggplot(aes(x = year, y = lifeExp)) +
geom_line(aes(group = country), color = "white") +
facet_wrap(~ continent, ncol = 5) +
stat_summary(geom = "line", fun = mean, color = "#C7B41D", lwd = 1.5) +
scale_x_continuous(breaks = seq(1950, 2010, by = 15)) +
theme_dark() +
theme(
strip.text = element_text(size = 15),
axis.text = element_text(size = 10),
axis.title = element_text(size = 15)
)
```
##
::: question
What am I doing?
Are there mistakes?
:::
```{r, echo = TRUE, eval = FALSE}
africa <- gapminder[gapminder$continent == "Africa", ]
africa_mm <- max(africa$lifeExp) - min(africa$lifeExp)
americas <- gapminder[gapminder$continent == "Americas", ]
americas_mm <- max(americas$lifeExp) - min(americas$lifeExp)
asia <- gapminder[gapminder$continent == "Asia", ]
asia_mm <- max(asia$lifeExp) - min(africa$lifeExp)
europe <- gapminder[gapminder$continent == "Europe", ]
europe_mm <- max(europe$lifeExp) - min(europe$lifeExp)
oceania <- gapminder[gapminder$continent == "Oceania", ]
oceania_mm <- max(europe$lifeExp) - min(oceania$lifeExp)
cbind(
continent = c("Africa", "Asias", "Europe", "Oceania"),
max_minus_min = c(africa_mm, americas_mm, asia_mm, europe_mm, oceania_mm)
)
```
```{r}
countdown(
minutes = 1,
# Fanfare when it's over
play_sound = TRUE,
# Set timer theme to match solarized colors
color_border = "#FFFFFF",
color_text = "#7aa81e",
color_running_background = "#7aa81e",
color_running_text = "#FFFFFF",
color_finished_background = "#ffa07a",
color_finished_text = "#FFFFFF",
font_size = "2em",
bottom = "-10%"
)
```
## Discussion
::: question
1. What are the drawbacks of this code?
2. How would you do it instead?
:::
```{r}
countdown(minutes = 1)
```
## An alternative solution
```{r, echo = TRUE, eval=FALSE}
gapminder |>
group_by(continent) |>
summarize(max_minus_min = max(lifeExp) - min(lifeExp))
```
. . .
::: columns
::: {.column width="50%"}
`group_by` approach
```{r}
gapminder |>
group_by(continent) |>
summarize(max_minus_min = max(lifeExp) - min(lifeExp))
```
:::
::: {.column width="50%"}
previous approach
```{r}
library(gapminder)
africa <- gapminder[gapminder$continent == "Africa", ]
africa_mm <- max(africa$lifeExp) - min(africa$lifeExp)
americas <- gapminder[gapminder$continent == "Americas", ]
americas_mm <- max(americas$lifeExp) - min(americas$lifeExp)
asia <- gapminder[gapminder$continent == "Asia", ]
asia_mm <- max(asia$lifeExp) - min(africa$lifeExp)
europe <- gapminder[gapminder$continent == "Europe", ]
europe_mm <- max(europe$lifeExp) - min(europe$lifeExp)
oceania <- gapminder[gapminder$continent == "Oceania", ]
oceania_mm <- max(europe$lifeExp) - min(oceania$lifeExp)
cbind(
continent = c("Africa", "Asias", "Europe", "Oceania"),
max_minus_min = c(africa_mm, americas_mm, asia_mm, europe_mm, oceania_mm)
)
```
:::
:::
## More iteration
```{r, eval = FALSE, echo = TRUE}
year <- 2017:2021
location <- c("Orlando", "San Diego", "Austin", "San Francisco", "remote")
conf <- rep_len("", length(year))
for (i in seq_along(conf)) {
conf[i] <- paste0("The ", year[i], " RStudio Conference was in ", location[i], ".")
}
conf
```
. . .
```{r, eval = TRUE, echo = FALSE}
year <- 2017:2021
location <- c("Orlando", "San Diego", "Austin", "San Francisco", "remote")
conf <- rep_len("", length(year))
for (i in seq_along(conf)) {
conf[i] <- paste0("The ", year[i], " RStudio Conference was in ", location[i], ".")
}
conf
```
<brshort>
. . .
::: question
Can you think of other ways to do this?
:::
```{r}
countdown(minutes = 0, seconds = 30, bottom = "-10%", right = "-10%")
```
## More iteration, cont.
```{r, echo = TRUE}
year <- 2017:2021
location <- c("Orlando", "San Diego", "Austin", "San Francisco", "remote")
```
<brshort>
```{r, echo = TRUE}
paste0("The ", year, " RStudio Conference was in ", location, ".")
```
<brshort>
. . .
```{r, echo = TRUE}
glue::glue("The {year} RStudio Conference was in {location}.")
```
. . .
Some R functions are *vectorized*.
# Introducing purrr
## But what if you really need to iterate? {.center .center-x}
<br>
```{r, out.width="20%"}
knitr::include_graphics("img/purrr-logo.png")
```
## `purrr`
<https://purrr.tidyverse.org/>
- `purrr` enhances R's functional programming toolkit
- a "core" package in the tidyverse meta-package
<br>
```{r, eval = FALSE, echo = TRUE}
install.packages("tidyverse") # <-- install purrr + much more
library(tidyverse) # <-- loads purrr + much more
```
<br>
```{r, eval = FALSE, echo = TRUE}
install.packages("purrr") # <-- installs only purrr
library(purrr) # <-- loads only purrr
```
## `purrr` vs `apply`
- purrr is an alternative to "apply" functions
- `purrr::map()` ≈ `base::lapply()`
![](img/tutorial-purrr-base.png)
::: footer
<https://jennybc.github.io/purrr-tutorial/bk01_base-functions.html>
:::
## Data
```{r, echo=TRUE, eval=FALSE}
library(purrr)
library(repurrrsive)
help(package = "repurrrsive")
```
::: columns
::: {.column width="47%"}
`got_chars`
![](img/logo-got.jpg)
:::
::: {.column width="3%"}
:::
::: {.column width="50%"}
`sw_people`, `sw_species`, etc.
![](img/logo_star-wars.png)
:::
:::
## Get comfortable with lists
![](img/list-vector.png){.r-stretch}
::: footer
<https://adv-r.hadley.nz/vectors-chap.html#vectors-chap>
:::
::: notes
Atomic vectors are familiar: logical, integer, double, character
Vectors come in two flavours: atomic vectors and lists.
They differ in terms of their elements' types: for atomic vectors, all elements must have the same type; for lists, elements can have different types.
:::
## Working with lists
![](img/drink-water.gif)
::: footer
<https://media.giphy.com/media/Bqn8Z7xdPCFy0/giphy.gif>
:::
## Live coding
1. How many elements are in `got_chars`?
2. Who is the 9th person listed in `got_chars`?
What information is given for this person?
3. What is the difference between `got_chars[9]` and `got_chars[[9]]`?
## List exploration
```{r, echo = TRUE, eval = FALSE}
str(x, list.len = ?, max.level = ?)
x[i]
x[[i]]
str(x[[i]], ...)
View(x) # in RStudio
```
## Subsetting lists
![](img/train-1.png)
. . .
![](img/train-2.png)
. . .
`[` returns a smaller list; `[[` returns contents in the list
::: footer
<https://adv-r.hadley.nz/subsetting.html#subset-single>
:::
::: notes
The train carrying objects is a list named x.
x\[1\] is a train with the first car x\[\[1\]\] is the contents of car 1
:::
## Subsetting lists, cont. {visibility="hidden"}
![](img/train-3.png)
::: footer
<https://adv-r.hadley.nz/subsetting.html#subset-single>
:::
::: notes
got_chars\[\[0\]\] #\> Error in got_chars\[\[0\]\]: attempt to select less than one element in get1index <real>
\[\[ is asking for one specific element either by position or by name and apparently it is implemented in such a way that errors for \[\[0\]\]
got_chars\[0\] #\> list()
whereas \[ is asking for a sub-list and apparently it is implemented in such a way that \[ is ok
:::
## Another list analogy
::: columns
::: {.column width="33%"}
`x`
![](img/pepper-1.jpg)
:::
::: {.column width="33%"}
`x[i]`
![](img/pepper-2.jpg)
:::
::: {.column width="33%"}
`x[[i]]`
![](img/pepper-3.jpg)
:::
:::
::: footer
<https://r4ds.had.co.nz/vectors.html?q=list#lists-of-condiments>
:::
::: notes
If this pepper shaker is your list x, then, x\[1\] is a pepper shaker containing a single pepper packet.
x\[2\] would look the same, but would contain the second packet.
x\[1:2\] would be a pepper shaker containing two pepper packets.
x\[\[1\]\] is the pepper packet.
:::
# Iterating with purrr
##
<br> <br>
::: r-fit-text
`purrr::map(.x, .f, ...)`
:::
<br>
. . .
::: r-fit-text
for every element of `.x` do `.f`
:::
## {background-image="img/lego-rstats_101-6938.jpg"}
<br>
::: {.black-code .center-x}
.x = minis
:::
::: footer
:::
## {background-image="img/lego-rstats_102-6929.jpg"}
<br>
::: {.black-code .center-x}
map(minis, antennate)
:::
::: footer
:::
##
::: r-fit-text
for every element of `.x` do `.f`
:::
::: center-x
![](img/map.png)
:::
::: footer
Advanced R: Ch.
9 Functionals
<https://adv-r.hadley.nz/functionals.html>
:::
## `purrr::map(.x, .f, ...)`
```{r, echo=TRUE, eval=FALSE}
.x <- SOME VECTOR OR LIST
out <- vector(mode = "list", length = length(.x))
for (i in seq_along(out)) {
out[[i]] <- .f(.x[[i]])
}
out
```
. . .
<br> `purrr::map()` is a nice way to write a for loop.
. . .
<br>
*Someone has to write a for loop. It doesn't have to be you.*
*\~ Jenny Bryan*
## Workflow demonstration
How many aliases does each GoT character have?
. . .
`map(got_chars, .f = 🤷)`
<br>
. . .
Workflow:
1. Do it for one element.
2. Find the general recipe.
3. Drop into `map()` to do for all.
## 1. Do it for one element
```{r, echo=TRUE, eval=TRUE}
got_chars[[9]]
```
## 1. Do it for one element
```{r, echo=TRUE, eval=TRUE}
got_chars[[9]][["aliases"]]
```
. . .
<br>
```{r, echo=TRUE, eval=TRUE}
length(got_chars[[9]][["aliases"]])
```
## 1. Do it for one element, again
```{r, echo=TRUE, eval=FALSE}
# Daenerys
got_chars[[9]]
got_chars[[9]][["aliases"]]
length(got_chars[[9]][["aliases"]])
```
. . .
<br>
```{r, echo=TRUE, eval=FALSE}
# Asha
got_chars[[13]]
got_chars[[13]][["aliases"]]
length(got_chars[[13]][["aliases"]])
```
## 2. Find the general recipe.
```{r, echo=TRUE, eval=FALSE}
# Daenerys
got_chars[[9]]
got_chars[[9]][["aliases"]]
length(got_chars[[9]][["aliases"]])
```
<br>
`.x <- got_chars[[?]]`
`length(.x[["aliases"]])`
. . .
<br>
- `.x` is a pronoun, like "it"
- `.x` means "the current element"
## 3. Drop into map() to do for all.
`.x <- got_chars[[?]]`
`length(.x[["aliases"]])`
```{r, echo=TRUE, eval=TRUE}
map(got_chars, ~ length(.x[["aliases"]]))
```
## Anonymous functions
```{r, echo=TRUE, eval=FALSE}
map(got_chars, ~ length(.x[["aliases"]]))
```
<br>
`~` is shortcut for anonymous functions supported in `purrr`
<br>
. . .
Three ways of specifying anonymous functions:
```{r, echo=TRUE, eval=FALSE}
map(got_chars, ~ length(.x[["aliases"]])) # supported in purrr
map(got_chars, function(x) length( x[["aliases"]])) # supported in base R
map(got_chars, \(x) length( x[["aliases"]])) # supported R > 4.1.0
```
::: footer
<https://adv-r.hadley.nz/functionals.html#purrr-shortcuts>
:::
## Your turn
::: question
How many \_\_\_ does each character have?
:::
<brshort>
| Characters | Items |
|------------|---------------------|
| got_chars | titles, allegiances |
| sw_people | vehicles, starships |
. . .
<br>
::: center-x
`map(got_chars, ~ length(.x[["aliases"]]))`
:::
```{r}
countdown(minutes = 5)
```
## Discussion {visibility="hidden"}
::: question
What are some challenges with this output?
How could it be improved?
:::
```{r}
countdown(minutes = 1)
```
::: notes
1. A list is returned.
2. We cannot see who is associated with each number of aliases.
:::
## Type specific map variants
```{r, echo=TRUE, eval=TRUE}
map_int(got_chars, ~ length(.x[["aliases"]]))
```
<br>
. . .
::: columns
::: {.column width="30%"}
`map_lgl()`
`map_int()`
`map_dbl()`
`map_chr()`
:::
::: {.column width="70%"}
<br>
returns an atomic *vector*
of the specified type
:::
:::
## Your turn
::: question
Replace map() with type-specific map().
:::
```{r echo=TRUE, eval=FALSE}
# What's each character's name?
map(got_chars, ~.x[["name"]])
map(sw_people, ~.x[["name"]])
# What color is each SW character's hair?
map(sw_people, ~ .x[["hair_color"]])
# Is the GoT character alive?
map(got_chars, ~ .x[["alive"]])
# Is the SW character female?
map(sw_people, ~ .x[["gender"]] == "female")
# How heavy is each SW character?
map(sw_people, ~ .x[["mass"]])
```
```{r}
countdown(minutes = 3)
```
# More purrr
## Review \#1
<br>
### Lists can be awkward.
### Lists can be necessary.
### Get to know your list.
## Review \#2
```{r, eval=FALSE, echo=TRUE}
purrr::map(.x, .f, ...)
```
for every element of `.x` do `.f`
<br>
. . .
```{r, eval=FALSE, echo=TRUE}
map_int(got_chars, ~ length(.x[["aliases"]]))
```
quick anonymous functions via formula
<br>
. . .
```{r, eval=FALSE, echo=TRUE}
map_lgl(sw_people, ~ .x[["gender"]] == "female")
map_int(got_chars, ~ length(.x[["aliases"]]))
map_chr(got_chars, ~ .x[["name"]])
```
type specific map variants
## We extract by name a lot
<br>
```{r, eval=FALSE, echo=TRUE}
# What's each character's name?
map(got_chars, ~.x[["name"]])
# What color is each SW character's hair?
map(sw_people, ~ .x[["hair_color"]])
# Is the GoT character alive?
map(got_chars, ~ .x[["alive"]])
# How heavy is each SW character?
map(sw_people, ~ .x[["mass"]])
```
## `.f` specification & shortcuts
::: columns
::: {.column width="55%"}
<br>
<brshort>
```{r, eval=FALSE, echo=TRUE}
get_name <- function(x){ x[["name"]] }
map_chr(got_chars, get_name)
```
<br>
```{r, eval=FALSE, echo=TRUE}
map_chr(got_chars, ~ .x[["name"]])
```
<br>
```{r, eval=FALSE, echo=TRUE}
map_chr(got_chars, "name")
```
<br>
```{r, eval=FALSE, echo=TRUE}
map_chr(got_chars, 3)
```
:::
::: {.column width="5%"}
:::
::: {.column width="40%"}
`.f` accepts
<brshort>
named functions
<br>
anonymous functions
<br>
a name
<br>
a position
:::
:::
## .f shortcuts {visibility="hidden"}
```{r, eval=FALSE, echo=TRUE}
get_name <- function(x){ x[["name"]] }
map_chr(got_chars, get_name)
```
`.f` accepts named functions
. . .
<brshort>
```{r, eval=FALSE, echo=TRUE}
map_chr(got_chars, ~ .x[["name"]])
```
`.f` accepts anonymous functions
. . .
<brshort>
```{r, eval=FALSE, echo=TRUE}
map_chr(got_chars, "name")
```