Indices - add NRI and NTI indices from phylocom

[GoogleCodeExporter]

The NRI and NTI indices have been developed as a side project (see ref below).  

These can be transferred across to the main distribution, and the MPD and MNTD 
indices shifted into the phylocom indiecs list.  



Kooyman, R.M., Rossetto, M., Sauquet, H. & Laffan, S.W. (2013) Landscape 
Patterns in Rainforest Phylogenetic Signal: Isolated Islands of Refugia or 
Structured Continental Distributions? PLoS One 8, e80685.  
http://dx.doi.org/10.1371/journal.pone.0080685

Original issue reported on code.google.com by shawnlaffan on 11 Mar 2014 at 4:45

[GoogleCodeExporter]

This issue was updated by revision r2211.

Add PhyloCom.pm.  It contains the nri/nti infrastructure.

Original comment by shawnlaffan on 11 Mar 2014 at 4:49

• Added labels: ****
• Removed labels: ****

[GoogleCodeExporter]

This issue was updated by revision r2213.

Update the test infrastructure and add PhyloCom.pm to the @ISA for Indices.
Make sure we explicitly use Math::BigInt.  
t/24-Indices_phylocom_nri_nti.t can actually be deleted since it is all in 
t/24-Indices_phylocom.t.  

Original comment by shawnlaffan on 11 Mar 2014 at 5:02

• Added labels: ****
• Removed labels: ****

[GoogleCodeExporter]

This issue was updated by revision r2214.

Shift the mpd/mntd calculations into PhyloCom.pm.
This way we have all the phylocom indices in the one package.

Original comment by shawnlaffan on 11 Mar 2014 at 5:11

• Added labels: ****
• Removed labels: ****

[GoogleCodeExporter]

Original comment by shawnlaffan on 13 Mar 2014 at 8:44

• Changed title: Indices - add NRI and NTI indices from phylocom
• Added labels: ****
• Removed labels: ****

[GoogleCodeExporter]

Mark as fixed.  

Original comment by shawnlaffan on 13 Mar 2014 at 8:45

• Changed state: Fixed
• Added labels: ****
• Removed labels: ****