diff --git a/README.md b/README.md index 72697a8..31b0b29 100644 --- a/README.md +++ b/README.md @@ -109,6 +109,7 @@ Check more [TaxonKit commands and usages](https://bioinf.shenwei.me/taxonkit/usa superkingdom 10 phylum 17 + class 39 order 59 family 189 genus 2224 @@ -125,7 +126,7 @@ Check more [TaxonKit commands and usages](https://bioinf.shenwei.me/taxonkit/usa 1. Complete lineage $ echo 2363788870 | taxonkit lineage - 2363788870 Orthornavirae;Pisuviricota;Nidovirales;Coronaviridae;Betacoronavirus;Severe acute respiratory syndrome-related coronavirus;severe acute respiratory syndrome coronavirus 2 + 2363788870 Orthornavirae;Pisuviricota;Pisoniviricetes;Nidovirales;Coronaviridae;Betacoronavirus;Severe acute respiratory syndrome-related coronavirus;severe acute respiratory syndrome coronavirus 2 # another format $ echo 2363788870 \ @@ -137,6 +138,7 @@ Check more [TaxonKit commands and usages](https://bioinf.shenwei.me/taxonkit/usa | csvtk pretty -Ht 104708768 superkingdom Orthornavirae 1506901452 phylum Pisuviricota + 3239177245 class Pisoniviricetes 37745009 order Nidovirales 738421640 family Coronaviridae 906833049 genus Betacoronavirus @@ -145,7 +147,7 @@ Check more [TaxonKit commands and usages](https://bioinf.shenwei.me/taxonkit/usa # in NCBI taxonomy $ echo 2697049 \ - | taxonkit lineage -t \ + | taxonkit lineage -t --data-dir ~/.taxonkit \ | csvtk cut -Ht -f 3 \ | csvtk unfold -Ht -f 1 -s ";" \ | taxonkit lineage -r -n -L \