Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

stats in machine readable format? #23

Closed
tseemann opened this issue Sep 16, 2017 · 4 comments
Closed

stats in machine readable format? #23

tseemann opened this issue Sep 16, 2017 · 4 comments

Comments

@tseemann
Copy link 

seqkit stat:
File.fastq.gz  FASTQ   DNA   1,091,110  162,522,654       35      149      151

The numbers have commas (,) in them and the results are space formatted to be easy for humans to read.

Do you have an --option to write in TSV without the commas?
So scripts can safely use cut,paste,mlr etc?
@shenwei356
Copy link
Owner

I'll add this option

@shenwei356
Copy link
Owner

a6aae0f

@shenwei356
Copy link
Owner

available in v0.7.1-dev

@tseemann
Copy link
Author

Thank you

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@tseemann @shenwei356