seqkit v0.3.1.1

_64-bit versions are highly recommended._

Changelog

• compile with go1.7rc5, with _higher performance and smaller size of binary file_

seqkit v0.3.1

_64-bit versions are highly recommended._

Changelog

• improve speed of seqkit locate
• compile with go1.6.3

seqkit v0.3.0

_64-bit versions are highly recommended._

Changelog

- use fork of github.com/brentp/xopen, using `zcat` for speedup of .gz file
  reading on \*nix systems.
- improve speed of parsing sequence ID when creating FASTA index
- reduce memory usage of `seqkit subseq --gtf`
- fix bug of `seqkit subseq` when using flag `--id-ncbi`
- fix bug of `seqkit split`, outdir error
- fix bug of `seqkit seq -p`, last base is wrongly failed to convert when
  sequence length is odd.
- add "sum_len" result for output of `seqkit stat`

SeqKit v0.2.9

Changes

• fix minor bug of seqkit split and seqkit shuffle,
  header name error due to improper use of pointer
• add option -O (--out-dir) to seqkit split

seqkit v0.2.8 with further speed improvement

• improve speed of parsing sequence ID, not using regular expression for default --id-regexp
• improve speed of record outputing for small-size sequences
• fix minor bug: seqkit seq for blank record
• update benchmark result

fakit v0.2.7 with faster speed and lower memory usage!

• _reduce memory usage_ by optimize the outputing of sequences.
  detail: using BufferedByteSliceWrapper to resuse bytes.Buffer.
• _reduce memory usage and improve speed_ by using custom buffered
  reading mechanism, instead of using standard library bufio,
  which is slow for large genome sequence.
• discard strategy of "buffer" and "chunk" of FASTA/Q records,
  just parse records one by one.
• delete global flags -c (--chunk-size) and -b (--buffer-size).
• add function testing scripts

fakit v0.2.6

Sorry for another version within a few hours :(

• fix bug of fakit subseq: Inplace subseq method leaded to wrong result

fakit v0.2.5.1

• fix a bug of fakit subseq: chromesome name was not be converting to lower case when using --gtf or --bed

fakit v0.2.5

• fix a serious bug brought in v0.2.3, using unsafe method to convert string to []byte
• add awk-like built-in variable of record number ({NR}) for fakit replace
• update benchmark results

fakit v0.2.4.1

• fix several bugs from library bio, affected situations:
  • Locating patterns in sequences by pattern FASTA file: fakit locate -f
  • Reading FASTQ file with record of which the quality starts with +
• add command version which could check for update

_Recompiled at 2016-06-06 due to changed output of subcommand version_