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For the new taxonkit filter command, I'm not sure what the difference is between the --list-ranks and --list-order flags. I can see that --list-order is more comprehensive. Can you explain the difference? Thank you for your patience! 😄
The text was updated successfully, but these errors were encountered:
--list-order list defined ranks in order
--list-ranks list ordered ranks in taxonomy database
--list-order is for listing user defined ranks in $HOME/.taxonkit/ranks.txt.
--list-ranks is for listing ranks in taxonomy database, which are sorted in user defined order. And all ranks in DB should be defined $HOME/.taxonkit/ranks.txt.
Some ranks in $HOME/.taxonkit/ranks.txt may be not appeared in current version of NCBI taxonomy database. I tried to cover al possible values. Most are from https://en.wikipedia.org/wiki/Taxonomic_rank .
For the new
taxonkit filter
command, I'm not sure what the difference is between the--list-ranks
and--list-order
flags. I can see that--list-order
is more comprehensive. Can you explain the difference? Thank you for your patience! 😄The text was updated successfully, but these errors were encountered: