From 9d6242bd9b5ac59de8f2d012fa1ca919d222478f Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Hugo=20L=C3=B3pez-Fern=C3=A1ndez?= Date: Wed, 29 Jul 2020 10:12:47 +0200 Subject: [PATCH] Update manual --- package-lock.json | 2 +- package.json | 2 +- src/assets/help/DreimtHelp.md | 9 +++++++-- src/assets/help/assets/help/DuplicatedDrug.png | Bin 0 -> 25279 bytes 4 files changed, 9 insertions(+), 4 deletions(-) create mode 100644 src/assets/help/assets/help/DuplicatedDrug.png diff --git a/package-lock.json b/package-lock.json index d242db3..4f5b49d 100644 --- a/package-lock.json +++ b/package-lock.json @@ -1,6 +1,6 @@ { "name": "@dreimt/frontend", - "version": "1.1.1", + "version": "1.1.2", "lockfileVersion": 1, "requires": true, "dependencies": { diff --git a/package.json b/package.json index 217e683..f698da9 100644 --- a/package.json +++ b/package.json @@ -1,7 +1,7 @@ { "name": "@dreimt/frontend", "description": "DREIMT - A tool for immune modulation drug prioritization", - "version": "1.1.1", + "version": "1.1.2", "license": "GPL-3.0", "author": { "name": "Hugo López-Fernández", diff --git a/src/assets/help/DreimtHelp.md b/src/assets/help/DreimtHelp.md index 4208977..a4c1a34 100644 --- a/src/assets/help/DreimtHelp.md +++ b/src/assets/help/DreimtHelp.md @@ -135,7 +135,7 @@ DREIMTdb in its **online** version only offers drug profile-immune gene expressi #### 3.1 Database fields DREIMTdb contains 12 information fields: -- **Drug**: drug common name and link to PubChem. Hovering the mouse over this field will display a tooltip with the drug's BRIAD ID and gene targets. +- **Drug**: drug common name and link to PubChem. Hovering the mouse over this field will display a tooltip with the drug's BROAD's ID, gene targets NCBI gene ID and a warning indicating that DREIMT contains multiple drug profiles for a given compound. - **Summary**: summarized sentence that includes relevant manually annotated information to ease drug association interpretation. @@ -617,7 +617,12 @@ The query its out of the required range of a minimum 15 genes and maximum of 200 ## 9. FAQ #### 9.1 Why are there duplicated drugs? -DREIMTdb contains 4,690 different drug profiles of which 3,580 correspond to unique compounds. Duplicated drugs correspond to compounds with different BROAD ID. Because of this, duplicated drugs in DREIMTdb might show different, even opposite tau scores for the same immune signature. +DREIMTdb contains 4,690 different drug profiles of which 3,580 correspond to unique compounds. Duplicated drugs correspond to compounds with different BROAD ID. Because of this, duplicated drugs in DREIMTdb might show different, even opposite tau scores for the same immune signature. DREIMTdb indicates compounds with multiple drug profiles with and exclamation mark icon and adding a warning in the drug tooltip. + +

+Error 2 +

+ #### 9.2 Why did the tau score change? 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