.travis.yml

language: c
sudo: true

env:
- TRAVIS_PYTHON_VERSION=3.6
- TRAVIS_PYTHON_VERSION=3.7
#- TRAVIS_PYTHON_VERSION=3.8

#branches:
  #only:
    #- master
    #- releasev3.2_1

os:
- linux
- osx
jobs:
  include:
  - stage: lint
    env:
    - LINT=1
    - TRAVIS_OS_NAME=linux
    before_install:
    - curl https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -o
      miniconda.sh
    - bash miniconda.sh -b -p $HOME/miniconda
    - PATH_WITHOUT_CONDA="$PATH"
    - export PATH="$HOME/miniconda/bin:$PATH"
    - hash -r
    - conda config --set always_yes yes --set changeps1 no
    - conda update -q conda
    install:
    - conda install --yes python=$TRAVIS_PYTHON_VERSION flake8
    script:
    - if [[ "$LINT" == "1" ]]; then flake8 . --exclude=.venv,.build,build --ignore=E501,F403,E402,F999,F405,E712,W503
      ; fi
before_install:
- export TEST_DATA_DIR="`pwd`/skggenometracks/test/test_data/"
- echo $TEST_DATA_DIR
- if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then
  curl https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -o miniconda.sh
  ; fi
- if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then curl
  https://repo.continuum.io/miniconda/Miniconda3-latest-MacOSX-x86_64.sh -o miniconda.sh
  ; fi
- bash miniconda.sh -b -p $HOME/miniconda
- PATH_WITHOUT_CONDA="$PATH"
- export PATH="$HOME/miniconda/bin:$PATH"
- hash -r
- conda config --set always_yes yes --set changeps1 no
- conda update -q conda
- conda info -a
install:
- conda install --yes -c bioconda -c conda-forge python=$TRAVIS_PYTHON_VERSION --file requirements.txt
- conda install --yes -c conda-forge -c bioconda pytest
- conda install --yes -c conda-forge -c bioconda nose
- conda install --yes -c conda-forge -c bioconda ghostscript
- conda install --yes pathlib
- python setup.py install
script:
- py.test skggenometracks --doctest-modules