From 9bc9100641d8e71ab120d43267d03ad108b2f215 Mon Sep 17 00:00:00 2001 From: Jan Beitner Date: Mon, 20 Sep 2021 17:06:32 +0100 Subject: [PATCH 1/9] Drop python 3.6 --- .github/workflows/pypi_release.yml | 4 +- .github/workflows/test.yml | 4 +- .readthedocs.yml | 2 +- poetry.lock | 313 ++++++++++++++++------------- pyproject.toml | 4 +- 5 files changed, 184 insertions(+), 143 deletions(-) diff --git a/.github/workflows/pypi_release.yml b/.github/workflows/pypi_release.yml index 6e6c95c6..84e26359 100644 --- a/.github/workflows/pypi_release.yml +++ b/.github/workflows/pypi_release.yml @@ -13,13 +13,13 @@ on: jobs: build: - runs-on: ubuntu-20.04 + runs-on: ubuntu-latest steps: - uses: actions/checkout@v2 - uses: actions/setup-python@v2 with: - python-version: 3.7 + python-version: 3.8 - name: Install poetry shell: bash diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index a9f06dd2..e49f6653 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -14,8 +14,8 @@ jobs: runs-on: ${{ matrix.os }} strategy: matrix: - os: [ubuntu-18.04, macOS-10.15] # add windows-2019 when poetry allows installation with `-f` flag - python-version: [3.6, 3.7, 3.8] # python 3.9 is not supported by all dependencies yet + os: [ubuntu-latest, macOS-latest] # add windows-2019 when poetry allows installation with `-f` flag + python-version: [3.7, 3.8, 3.9] # python 3.9 is not supported by all dependencies yet steps: - uses: actions/checkout@v2 diff --git a/.readthedocs.yml b/.readthedocs.yml index 948c1bf6..e14ec7ac 100644 --- a/.readthedocs.yml +++ b/.readthedocs.yml @@ -21,6 +21,6 @@ formats: # Optionally set the version of Python and requirements required to build your docs python: - version: 3.7 + version: 3.8 install: - requirements: docs/requirements.txt diff --git a/poetry.lock b/poetry.lock index 3513d441..1cb146b1 100644 --- a/poetry.lock +++ b/poetry.lock @@ -577,7 +577,7 @@ tornado = ">=4.2" traitlets = ">=4.1.0" [package.extras] -test = 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b/CHANGELOG.md index 1e46ab7c..2b535e91 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -8,7 +8,7 @@ - Optimizer can be initialized by passing string, class or function (#602) - Add support for multiple outputs in Baseline model (#603) - Added Optuna pruner as optional parameter in `TemporalFusionTransformer.optimize_hyperparameters` (#619) - +- Dropping support for Python 3.6 and starting support for Python 3.9 (#639) ### Fixed diff --git a/poetry.lock b/poetry.lock index 1cb146b1..db99d777 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,27 +1,26 @@ [[package]] -name = "absl-py" -version = "0.12.0" -description = "Abseil Python Common Libraries, see https://github.com/abseil/abseil-py." category = "main" +description = "Abseil Python Common Libraries, see https://github.com/abseil/abseil-py." +name = "absl-py" optional = false python-versions = "*" +version = "0.13.0" [package.dependencies] six = "*" [[package]] -name = "aiohttp" -version = "3.7.4.post0" -description = "Async http client/server framework (asyncio)" category = "main" +description = "Async http client/server framework (asyncio)" +name = "aiohttp" optional = false python-versions = ">=3.6" +version = "3.7.4.post0" [package.dependencies] async-timeout = ">=3.0,<4.0" attrs = ">=17.3.0" chardet = ">=2.0,<5.0" -idna-ssl = {version = ">=1.0", markers = "python_version < \"3.7\""} multidict = ">=4.5,<7.0" typing-extensions = ">=3.6.5" yarl = ">=1.0,<2.0" @@ -30,31 +29,28 @@ yarl = ">=1.0,<2.0" speedups = ["aiodns", "brotlipy", "cchardet"] [[package]] -name = "alabaster" -version = "0.7.12" -description = "A configurable sidebar-enabled Sphinx theme" category = "dev" +description = "A configurable sidebar-enabled Sphinx theme" +name = "alabaster" optional = false python-versions = "*" +version = "0.7.12" [[package]] -name = "alembic" -version = "1.5.8" -description = "A database migration tool for SQLAlchemy." category = "main" +description = "A database migration tool for SQLAlchemy." +name = "alembic" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7" +version = "1.6.5" [package.dependencies] Mako = "*" +SQLAlchemy = ">=1.3.0" python-dateutil = "*" python-editor = ">=0.3" -SQLAlchemy = ">=1.3.0" [[package]] -name = "apipkg" -version = "1.5" -description = "apipkg: namespace control and lazy-import mechanism" category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" @@ -64,16 +60,23 @@ name = "appnope" version = "0.1.2" description = "Disable App Nap on macOS >= 10.9" category = "dev" +description = "Disable App Nap on macOS >= 10.9" +marker = "sys_platform == \"darwin\" or platform_system == \"Darwin\"" +name = "appnope" optional = false python-versions = "*" +version = "0.1.2" [[package]] name = "astroid" version = "2.8.0" description = "An abstract syntax tree for Python with inference support." category = "dev" +description = "An abstract syntax tree for Python with inference support." +name = "astroid" 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Open, modern and actively maintained alternative to Chardet." +marker = "python_version >= \"3\"" +name = "charset-normalizer" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +python-versions = ">=3.5.0" +version = "2.0.4" + +[package.extras] +unicode_backport = ["unicodedata2"] [[package]] -name = "click" -version = "7.1.2" -description = "Composable command line interface toolkit" category = "dev" +description = "Composable command line interface toolkit" +name = "click" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +python-versions = ">=3.6" +version = "8.0.1" + +[package.dependencies] +colorama = "*" + +[package.dependencies.importlib-metadata] +python = "<3.8" +version = "*" [[package]] -name = "cliff" -version = "3.7.0" -description = "Command Line Interface Formulation Framework" category = "main" +description = "Command Line Interface Formulation Framework" +name = "cliff" optional = false python-versions = ">=3.6" +version = "3.8.0" [package.dependencies] +PrettyTable = ">=0.7.2" +PyYAML = ">=3.12" cmd2 = ">=1.0.0" pbr = ">=2.0.0,<2.1.0 || >2.1.0" -PrettyTable = ">=0.7.2" pyparsing = ">=2.1.0" -PyYAML = ">=3.12" stevedore = ">=2.0.1" [[package]] -name = "cmaes" -version = "0.8.2" -description = "Lightweight Covariance Matrix Adaptation Evolution Strategy (CMA-ES) implementation for Python 3." category = "main" +description = "Lightweight Covariance Matrix Adaptation Evolution Strategy (CMA-ES) implementation for Python 3." +name = "cmaes" optional = false python-versions = ">=3.6" +version = "0.8.2" [package.dependencies] numpy = "*" [[package]] -name = "cmd2" -version = "1.5.0" -description = "cmd2 - quickly build feature-rich and user-friendly interactive command line applications in Python" category = "main" +description = "cmd2 - quickly build feature-rich and user-friendly interactive command line applications in Python" +name = "cmd2" optional = false -python-versions = ">=3.5" +python-versions = ">=3.6" +version = "2.1.2" [package.dependencies] attrs = ">=16.3.0" colorama = ">=0.3.7" -importlib-metadata = {version = ">=1.6.0", markers = "python_version < \"3.8\""} pyperclip = ">=1.6" -pyreadline = {version = "*", markers = "sys_platform == \"win32\" and python_version < \"3.8\""} -pyreadline3 = {version = "*", markers = "sys_platform == \"win32\" and python_version >= \"3.8\""} wcwidth = ">=0.1.7" +[package.dependencies.importlib-metadata] +python = "<3.8" +version = ">=1.6.0" + +[package.dependencies.pyreadline] +python = "<3.8" +version = "*" + +[package.dependencies.pyreadline3] +python = ">=3.8" +version = "*" + +[package.dependencies.typing-extensions] +python = "<3.8" +version = "*" + [package.extras] -dev = ["pytest (>=4.6)", "codecov", "pytest-cov", "pytest-mock", "flake8", "sphinx", "sphinx-rtd-theme", "sphinx-autobuild", "doc8", "invoke", "twine (>=1.11)", "mock", "nox (==2019.11.9)", "nox"] -test = ["codecov", "coverage", "pytest (>=4.6)", "pytest-cov", "pytest-mock", "mock", "gnureadline"] +dev = ["codecov", "doc8", "flake8", "invoke", "mypy (0.902)", "nox", "pytest (>=4.6)", "pytest-cov", "pytest-mock", "sphinx", "sphinx-rtd-theme", "sphinx-autobuild", "twine (>=1.11)"] +test = ["codecov", "coverage", "pytest (>=4.6)", "pytest-cov", "pytest-mock", "gnureadline"] +validate = ["flake8", "mypy (0.902)"] [[package]] -name = "colorama" -version = "0.4.4" -description = "Cross-platform colored terminal text." category = "main" +description = "Cross-platform colored terminal text." +name = "colorama" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +version = "0.4.4" [[package]] -name = "colorlog" -version = "5.0.1" -description = "Add colours to the output of Python's logging module." category = "main" +description = "Add colours to the output of Python's logging module." +name = "colorlog" optional = false python-versions = "*" +version = "5.0.1" [package.dependencies] -colorama = {version = "*", markers = "sys_platform == \"win32\""} +colorama = "*" [[package]] -name = "commonmark" -version = "0.9.1" -description = "Python parser for the CommonMark Markdown spec" category = "dev" +description = "Python parser for the CommonMark Markdown spec" +name = "commonmark" optional = false python-versions = "*" +version = "0.9.1" [package.extras] -test = ["flake8 (==3.7.8)", "hypothesis (==3.55.3)"] +test = ["flake8 (3.7.8)", "hypothesis (3.55.3)"] [[package]] -name = "coverage" -version = "5.5" -description = "Code coverage measurement for Python" category = "dev" +description = "Code coverage measurement for Python" +name = "coverage" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, <4" +version = "5.5" [package.extras] toml = ["toml"] [[package]] -name = "cycler" -version = "0.10.0" -description = "Composable style cycles" category = "main" +description = "Composable style cycles" +name = "cycler" optional = false python-versions = "*" +version = "0.10.0" [package.dependencies] six = "*" [[package]] -name = "dataclasses" -version = "0.6" -description = "A backport of the dataclasses module for Python 3.6" -category = "main" +category = "dev" +description = "An implementation of the Debug Adapter Protocol for Python" +name = "debugpy" optional = false -python-versions = "*" +python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*" +version = "1.4.1" [[package]] -name = "decorator" -version = "5.0.7" -description = "Decorators for Humans" category = "dev" +description = "Decorators for Humans" +name = "decorator" optional = false python-versions = ">=3.5" +version = "5.0.9" [[package]] -name = "defusedxml" -version = "0.7.1" -description = "XML bomb protection for Python stdlib modules" category = "dev" +description = "XML bomb protection for Python stdlib modules" +name = "defusedxml" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +version = "0.7.1" [[package]] -name = "docutils" -version = "0.16" -description = "Docutils -- Python Documentation Utilities" category = "dev" +description = "Docutils -- Python Documentation Utilities" +name = "docutils" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +version = "0.16" [[package]] -name = "entrypoints" -version = "0.3" -description = "Discover and load entry points from installed packages." category = "dev" +description = "Discover and load entry points from installed packages." +name = "entrypoints" optional = false python-versions = ">=2.7" +version = "0.3" [[package]] -name = "execnet" -version = "1.8.0" -description = "execnet: rapid multi-Python deployment" category = "dev" +description = "execnet: rapid multi-Python deployment" +name = "execnet" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" - -[package.dependencies] -apipkg = ">=1.4" +version = "1.9.0" [package.extras] testing = ["pre-commit"] [[package]] -name = "flake8" -version = "3.9.2" -description = "the modular source code checker: pep8 pyflakes and co" category = "dev" +description = "the modular source code checker: pep8 pyflakes and co" +name = "flake8" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7" +version = "3.9.2" [package.dependencies] -importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} mccabe = ">=0.6.0,<0.7.0" pycodestyle = ">=2.7.0,<2.8.0" pyflakes = ">=2.3.0,<2.4.0" +[package.dependencies.importlib-metadata] +python = "<3.8" +version = "*" + [[package]] name = "fsspec" version = "2021.8.1" description = "File-system specification" category = "main" +description = "File-system specification" +name = "fsspec" optional = false python-versions = ">=3.6" +version = "2021.7.0" [package.dependencies] -aiohttp = {version = "*", optional = true, markers = "extra == \"http\""} -requests = {version = "*", optional = true, markers = "extra == \"http\""} +[package.dependencies.aiohttp] +optional = true +version = "*" + +[package.dependencies.requests] +optional = true +version = "*" [package.extras] abfs = ["adlfs"] @@ -436,39 +494,43 @@ smb = ["smbprotocol"] ssh = ["paramiko"] [[package]] -name = "future" -version = "0.18.2" -description = "Clean single-source support for Python 3 and 2" category = "main" +description = "Clean single-source support for Python 3 and 2" +name = "future" optional = false python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*" +version = "0.18.2" [[package]] -name = "google-auth" -version = "1.30.0" -description = "Google Authentication Library" category = "main" +description = "Google Authentication Library" +name = "google-auth" optional = false python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*" +version = "1.34.0" [package.dependencies] cachetools = ">=2.0.0,<5.0" pyasn1-modules = ">=0.2.1" -rsa = {version = ">=3.1.4,<5", markers = "python_version >= \"3.6\""} +setuptools = ">=40.3.0" six = ">=1.9.0" +[package.dependencies.rsa] +python = ">=3.6" +version = ">=3.1.4,<5" + [package.extras] -aiohttp = ["aiohttp (>=3.6.2,<4.0.0dev)"] +aiohttp = ["requests (>=2.20.0,<3.0.0dev)", "aiohttp (>=3.6.2,<4.0.0dev)"] pyopenssl = ["pyopenssl (>=20.0.0)"] reauth = ["pyu2f (>=0.1.5)"] [[package]] -name = "google-auth-oauthlib" -version = "0.4.4" -description = "Google Authentication Library" category = "main" +description = "Google Authentication Library" +name = "google-auth-oauthlib" optional = false python-versions = ">=3.6" +version = "0.4.5" [package.dependencies] google-auth = ">=1.0.0" @@ -478,125 +540,127 @@ requests-oauthlib = ">=0.7.0" tool = ["click (>=6.0.0)"] [[package]] -name = "greenlet" -version = "1.0.0" -description = "Lightweight in-process concurrent programming" category = "main" +description = "Lightweight in-process concurrent programming" +marker = "python_version >= \"3\"" +name = "greenlet" optional = false python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*" +version = "1.1.0" [package.extras] docs = ["sphinx"] [[package]] -name = "grpcio" -version = "1.37.0" -description = "HTTP/2-based RPC framework" category = "main" +description = "HTTP/2-based RPC framework" +name = "grpcio" optional = false python-versions = "*" +version = "1.39.0" [package.dependencies] six = ">=1.5.2" [package.extras] -protobuf = ["grpcio-tools (>=1.37.0)"] +protobuf = ["grpcio-tools (>=1.39.0)"] [[package]] -name = "idna" -version = "2.10" -description = "Internationalized Domain Names in Applications (IDNA)" -category = "main" -optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" - -[[package]] -name = "idna-ssl" -version = "1.1.0" -description = "Patch ssl.match_hostname for Unicode(idna) domains support" category = "main" +description = "Internationalized Domain Names in Applications (IDNA)" +name = "idna" optional = false -python-versions = "*" - -[package.dependencies] -idna = ">=2.0" +python-versions = ">=3.5" +version = "3.2" [[package]] -name = "imagesize" -version = "1.2.0" -description = "Getting image size from png/jpeg/jpeg2000/gif file" category = "dev" +description = "Getting image size from png/jpeg/jpeg2000/gif file" +name = "imagesize" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +version = "1.2.0" [[package]] -name = "importlib-metadata" -version = "4.0.1" -description = "Read metadata from Python packages" category = "main" +description = "Read metadata from Python packages" +marker = "python_version < \"3.8\"" +name = "importlib-metadata" optional = false python-versions = ">=3.6" +version = "3.10.1" [package.dependencies] -typing-extensions = {version = ">=3.6.4", markers = "python_version < \"3.8\""} zipp = ">=0.5" +[package.dependencies.typing-extensions] +python = "<3.8" +version = ">=3.6.4" + [package.extras] docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"] testing = ["pytest (>=4.6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "packaging", "pep517", "pyfakefs", "flufl.flake8", "pytest-black (>=0.3.7)", "pytest-mypy", "importlib-resources (>=1.3)"] [[package]] -name = "iniconfig" -version = "1.1.1" -description = "iniconfig: brain-dead simple config-ini parsing" category = "main" +description = "iniconfig: brain-dead simple config-ini parsing" +name = "iniconfig" optional = false python-versions = "*" +version = "1.1.1" [[package]] -name = "invoke" -version = "1.6.0" -description = "Pythonic task execution" category = "dev" +description = "Pythonic task execution" +name = "invoke" optional = false python-versions = "*" +version = "1.6.0" [[package]] -name = "ipykernel" -version = "5.5.5" -description = "IPython Kernel for Jupyter" category = "dev" +description = "IPython Kernel for Jupyter" +name = "ipykernel" optional = false -python-versions = ">=3.5" +python-versions = ">=3.7" +version = "6.0.3" [package.dependencies] -appnope = {version = "*", markers = "platform_system == \"Darwin\""} -ipython = ">=5.0.0" -jupyter-client = "*" -tornado = ">=4.2" -traitlets = ">=4.1.0" +appnope = "*" +debugpy = ">=1.0.0,<2.0" +ipython = ">=7.23.1,<8.0" +jupyter-client = "<7.0" +matplotlib-inline = ">=0.1.0,<0.2.0" +tornado = ">=4.2,<7.0" +traitlets = ">=4.1.0,<6.0" + +[package.dependencies.importlib-metadata] +python = "<3.8.0" +version = "<4" [package.extras] test = ["pytest (!=5.3.4)", "pytest-cov", "flaky", "nose", "ipyparallel"] [[package]] -name = "ipython" -version = "7.16.1" -description = "IPython: Productive Interactive Computing" category = "dev" +description = "IPython: Productive Interactive Computing" +name = "ipython" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" +version = "7.26.0" [package.dependencies] -appnope = {version = "*", markers = "sys_platform == \"darwin\""} +appnope = "*" backcall = "*" -colorama = {version = "*", markers = "sys_platform == \"win32\""} +colorama = "*" decorator = "*" -jedi = ">=0.10" -pexpect = {version = "*", markers = "sys_platform != \"win32\""} +jedi = ">=0.16" +matplotlib-inline = "*" +pexpect = ">4.3" pickleshare = "*" prompt-toolkit = ">=2.0.0,<3.0.0 || >3.0.0,<3.0.1 || >3.0.1,<3.1.0" pygments = "*" +setuptools = ">=18.5" traitlets = ">=4.2" [package.extras] @@ -611,89 +675,93 @@ qtconsole = ["qtconsole"] test = ["nose (>=0.10.1)", "requests", "testpath", "pygments", "nbformat", "ipykernel", "numpy (>=1.17)"] [[package]] -name = "ipython-genutils" -version = "0.2.0" -description = "Vestigial utilities from IPython" category = "dev" +description = "Vestigial utilities from IPython" +name = "ipython-genutils" optional = false python-versions = "*" +version = "0.2.0" [[package]] -name = "isort" -version = "5.9.3" -description = "A Python utility / library to sort Python imports." category = "dev" +description = "A Python utility / library to sort Python imports." +name = "isort" optional = false python-versions = ">=3.6.1,<4.0" +version = "5.9.3" [package.extras] -pipfile_deprecated_finder = ["pipreqs", "requirementslib"] -requirements_deprecated_finder = ["pipreqs", "pip-api"] colors = ["colorama (>=0.4.3,<0.5.0)"] +pipfile_deprecated_finder = ["pipreqs", "requirementslib"] plugins = ["setuptools"] +requirements_deprecated_finder = ["pipreqs", "pip-api"] [[package]] -name = "jedi" -version = "0.18.0" -description = "An autocompletion tool for Python that can be used for text editors." category = "dev" +description = "An autocompletion tool for Python that can be used for text editors." +name = "jedi" optional = false python-versions = ">=3.6" +version = "0.18.0" [package.dependencies] parso = ">=0.8.0,<0.9.0" [package.extras] -qa = ["flake8 (==3.8.3)", "mypy (==0.782)"] +qa = ["flake8 (3.8.3)", "mypy (0.782)"] testing = ["Django (<3.1)", "colorama", "docopt", "pytest (<6.0.0)"] [[package]] -name = "jinja2" -version = "2.11.3" -description = "A very fast and expressive template engine." category = "dev" +description = "A very fast and expressive template engine." +name = "jinja2" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +python-versions = ">=3.6" +version = "3.0.1" [package.dependencies] -MarkupSafe = ">=0.23" +MarkupSafe = ">=2.0" [package.extras] -i18n = ["Babel (>=0.8)"] +i18n = ["Babel (>=2.7)"] [[package]] -name = "joblib" -version = "1.0.1" -description = "Lightweight pipelining with Python functions" category = "main" +description = "Lightweight pipelining with Python functions" +name = "joblib" optional = false python-versions = ">=3.6" +version = "1.0.1" [[package]] -name = "jsonschema" -version = "3.2.0" -description = "An implementation of JSON Schema validation for Python" category = "dev" +description = "An implementation of JSON Schema validation for Python" +name = "jsonschema" optional = false python-versions = "*" +version = "3.2.0" [package.dependencies] attrs = ">=17.4.0" -importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} pyrsistent = ">=0.14.0" +setuptools = "*" six = ">=1.11.0" +[package.dependencies.importlib-metadata] +python = "<3.8" +version = "*" + [package.extras] format = ["idna", "jsonpointer (>1.13)", "rfc3987", "strict-rfc3339", "webcolors"] format_nongpl = ["idna", "jsonpointer (>1.13)", "webcolors", "rfc3986-validator (>0.1.0)", "rfc3339-validator"] [[package]] -name = "jupyter-client" -version = "6.2.0" -description = "Jupyter protocol implementation and client libraries" category = "dev" +description = "Jupyter protocol implementation and client libraries" +name = "jupyter-client" optional = false python-versions = ">=3.6.1" +version = "6.2.0" [package.dependencies] jupyter-core = ">=4.6.0" @@ -708,51 +776,51 @@ doc = ["sphinx (>=1.3.6)", "sphinx-rtd-theme", "sphinxcontrib-github-alt"] test = ["async-generator", "ipykernel", "ipython", "mock", "pytest-asyncio", "pytest-timeout", "pytest", "mypy", "pre-commit", "jedi (<0.18)"] [[package]] -name = "jupyter-core" -version = "4.7.1" -description = "Jupyter core package. A base package on which Jupyter projects rely." category = "dev" +description = "Jupyter core package. A base package on which Jupyter projects rely." +name = "jupyter-core" optional = false python-versions = ">=3.6" +version = "4.7.1" [package.dependencies] -pywin32 = {version = ">=1.0", markers = "sys_platform == \"win32\""} +pywin32 = ">=1.0" traitlets = "*" [[package]] -name = "jupyterlab-pygments" -version = "0.1.2" -description = "Pygments theme using JupyterLab CSS variables" category = "dev" +description = "Pygments theme using JupyterLab CSS variables" +name = "jupyterlab-pygments" optional = false python-versions = "*" +version = "0.1.2" [package.dependencies] pygments = ">=2.4.1,<3" [[package]] -name = "kiwisolver" -version = "1.3.1" -description = "A fast implementation of the Cassowary constraint solver" category = "main" +description = "A fast implementation of the Cassowary constraint solver" +name = "kiwisolver" optional = false python-versions = ">=3.6" +version = "1.3.1" [[package]] -name = "lazy-object-proxy" -version = "1.6.0" -description = "A fast and thorough lazy object proxy." category = "dev" +description = "A fast and thorough lazy object proxy." +name = "lazy-object-proxy" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*" +version = "1.6.0" [[package]] -name = "mako" -version = "1.1.4" -description = "A super-fast templating language that borrows the best ideas from the existing templating languages." category = "main" +description = "A super-fast templating language that borrows the best ideas from the existing templating languages." +name = "mako" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +version = "1.1.4" [package.dependencies] MarkupSafe = ">=0.9.2" @@ -762,34 +830,36 @@ babel = ["babel"] lingua = ["lingua"] [[package]] -name = "markdown" -version = "3.3.4" -description = "Python implementation of Markdown." category = "main" +description = "Python implementation of Markdown." +name = "markdown" optional = false python-versions = ">=3.6" +version = "3.3.4" [package.dependencies] -importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} +[package.dependencies.importlib-metadata] +python = "<3.8" +version = "*" [package.extras] testing = ["coverage", "pyyaml"] [[package]] -name = "markupsafe" -version = "1.1.1" -description = "Safely add untrusted strings to HTML/XML markup." category = "main" +description = "Safely add untrusted strings to HTML/XML markup." +name = "markupsafe" optional = false -python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*" +python-versions = ">=3.6" +version = "2.0.1" [[package]] -name = "matplotlib" -version = "3.3.4" -description = "Python plotting package" category = "main" +description = "Python plotting package" +name = "matplotlib" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" +version = "3.4.2" [package.dependencies] cycler = ">=0.10" @@ -811,62 +881,65 @@ version = "0.1.2" traitlets = "*" [[package]] -name = "mccabe" -version = "0.6.1" -description = "McCabe checker, plugin for flake8" category = "dev" +description = "McCabe checker, plugin for flake8" +name = "mccabe" optional = false python-versions = "*" +version = "0.6.1" [[package]] -name = "mistune" -version = "0.8.4" -description = "The fastest markdown parser in pure Python" category = "dev" +description = "The fastest markdown parser in pure Python" +name = "mistune" optional = false python-versions = "*" +version = "0.8.4" [[package]] -name = "multidict" -version = "5.1.0" -description = "multidict implementation" category = "main" +description = "multidict implementation" +name = "multidict" optional = false python-versions = ">=3.6" +version = "5.1.0" [[package]] -name = "mypy" -version = "0.910" -description = "Optional static typing for Python" category = "dev" +description = "Optional static typing for Python" +name = "mypy" optional = false python-versions = ">=3.5" +version = "0.910" [package.dependencies] mypy-extensions = ">=0.4.3,<0.5.0" toml = "*" -typed-ast = {version = ">=1.4.0,<1.5.0", markers = "python_version < \"3.8\""} typing-extensions = ">=3.7.4" +[package.dependencies.typed-ast] +python = "<3.8" +version = ">=1.4.0,<1.5.0" + [package.extras] dmypy = ["psutil (>=4.0)"] python2 = ["typed-ast (>=1.4.0,<1.5.0)"] [[package]] -name = "mypy-extensions" -version = "0.4.3" -description = "Experimental type system extensions for programs checked with the mypy typechecker." category = "dev" +description = "Experimental type system extensions for programs checked with the mypy typechecker." +name = "mypy-extensions" optional = false python-versions = "*" +version = "0.4.3" [[package]] -name = "nbclient" -version = "0.5.3" -description = "A client library for executing notebooks. Formerly nbconvert's ExecutePreprocessor." category = "dev" +description = "A client library for executing notebooks. Formerly nbconvert's ExecutePreprocessor." +name = "nbclient" optional = false python-versions = ">=3.6.1" +version = "0.5.3" [package.dependencies] async-generator = "*" @@ -881,12 +954,12 @@ sphinx = ["Sphinx (>=1.7)", "sphinx-book-theme", "mock", "moto", "myst-parser"] test = ["codecov", "coverage", "ipython", "ipykernel", "ipywidgets", "pytest (>=4.1)", "pytest-cov (>=2.6.1)", "check-manifest", "flake8", "mypy", "tox", "bumpversion", "xmltodict", "pip (>=18.1)", "wheel (>=0.31.0)", "setuptools (>=38.6.0)", "twine (>=1.11.0)", "black"] [[package]] -name = "nbconvert" -version = "6.0.7" -description = "Converting Jupyter Notebooks" category = "dev" +description = "Converting Jupyter Notebooks" +name = "nbconvert" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" +version = "6.1.0" [package.dependencies] bleach = "*" @@ -904,19 +977,19 @@ testpath = "*" traitlets = ">=5.0" [package.extras] -all = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pyppeteer (==0.2.2)", "tornado (>=4.0)", "sphinx (>=1.5.1)", "sphinx-rtd-theme", "nbsphinx (>=0.2.12)", "ipython"] +all = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pyppeteer (0.2.2)", "tornado (>=4.0)", "sphinx (>=1.5.1)", "sphinx-rtd-theme", "nbsphinx (>=0.2.12)", "ipython"] docs = ["sphinx (>=1.5.1)", "sphinx-rtd-theme", "nbsphinx (>=0.2.12)", "ipython"] serve = ["tornado (>=4.0)"] -test = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pyppeteer (==0.2.2)"] -webpdf = ["pyppeteer (==0.2.2)"] +test = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pyppeteer (0.2.2)"] +webpdf = ["pyppeteer (0.2.2)"] [[package]] -name = "nbformat" -version = "5.1.3" -description = "The Jupyter Notebook format" category = "dev" +description = "The Jupyter Notebook format" +name = "nbformat" optional = false python-versions = ">=3.5" +version = "5.1.3" [package.dependencies] ipython-genutils = "*" @@ -933,8 +1006,11 @@ name = "nbsphinx" version = "0.8.7" description = "Jupyter Notebook Tools for Sphinx" category = "dev" +description = "Jupyter Notebook Tools for Sphinx" +name = "nbsphinx" optional = false python-versions = ">=3.6" +version = "0.8.6" [package.dependencies] docutils = "*" @@ -945,84 +1021,84 @@ sphinx = ">=1.8" traitlets = "*" [[package]] -name = "nest-asyncio" -version = "1.5.1" -description = "Patch asyncio to allow nested event loops" category = "dev" +description = "Patch asyncio to allow nested event loops" +name = "nest-asyncio" optional = false python-versions = ">=3.5" +version = "1.5.1" [[package]] -name = "numpy" -version = "1.19.5" -description = "NumPy is the fundamental package for array computing with Python." category = "main" +description = "NumPy is the fundamental package for array computing with Python." +name = "numpy" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" +version = "1.21.1" [[package]] -name = "oauthlib" -version = "3.1.0" -description = "A generic, spec-compliant, thorough implementation of the OAuth request-signing logic" category = "main" +description = "A generic, spec-compliant, thorough implementation of the OAuth request-signing logic" +name = "oauthlib" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +python-versions = ">=3.6" +version = "3.1.1" [package.extras] -rsa = ["cryptography"] -signals = ["blinker"] -signedtoken = ["cryptography", "pyjwt (>=1.0.0)"] +rsa = ["cryptography (>=3.0.0,<4)"] +signals = ["blinker (>=1.4.0)"] +signedtoken = ["cryptography (>=3.0.0,<4)", "pyjwt (>=2.0.0,<3)"] [[package]] -name = "optuna" -version = "2.9.1" -description = "A hyperparameter optimization framework" category = "main" +description = "A hyperparameter optimization framework" +name = "optuna" optional = false python-versions = ">=3.6" +version = "2.9.1" [package.dependencies] +PyYAML = "*" alembic = "*" cliff = "*" cmaes = ">=0.8.2" colorlog = "*" numpy = "*" packaging = ">=20.0" -PyYAML = "*" scipy = "!=1.4.0" sqlalchemy = ">=1.1.0" tqdm = "*" [package.extras] benchmark = ["asv", "virtualenv"] -checking = ["black", "hacking", "isort", "mypy (==0.790)", "blackdoc"] +checking = ["black", "hacking", "isort", "mypy (0.790)", "blackdoc"] codecov = ["codecov", "pytest-cov"] doctest = ["cma", "matplotlib (>=3.0.0)", "pandas", "plotly (>=4.0.0)", "scikit-learn (>=0.24.2)", "scikit-optimize", "mlflow"] -document = ["sphinx (<4.0.0)", "sphinx-rtd-theme", "sphinx-copybutton", "sphinx-gallery", "sphinx-plotly-directive", "pillow", "matplotlib", "scikit-learn", "plotly (>=4.0.0)", "pandas", "lightgbm", "torch (==1.8.0)", "torchvision (==0.9.0)", "torchaudio (==0.8.0)", "thop"] +document = ["sphinx (<4.0.0)", "sphinx-rtd-theme", "sphinx-copybutton", "sphinx-gallery", "sphinx-plotly-directive", "pillow", "matplotlib", "scikit-learn", "plotly (>=4.0.0)", "pandas", "lightgbm", "torch (1.8.0)", "torchvision (0.9.0)", "torchaudio (0.8.0)", "thop"] experimental = ["redis"] -integration = ["chainer (>=5.0.0)", "cma", "lightgbm", "mlflow", "wandb", "mpi4py", "mxnet", "pandas", "scikit-learn (>=0.24.2)", "scikit-optimize", "xgboost", "pytorch-ignite", "pytorch-lightning (>=1.0.2)", "skorch", "catalyst (>=21.3)", "torchaudio (==0.8.0)", "allennlp (>=2.2.0)", "fastai", "keras", "tensorflow (<2.5.0)", "tensorflow-datasets", "botorch (>=0.4.0)", "torch (==1.8.0+cpu)", "torchvision (==0.9.0+cpu)", "torch (==1.8.0)", "torchvision (==0.9.0)"] +integration = ["chainer (>=5.0.0)", "cma", "lightgbm", "mlflow", "wandb", "mpi4py", "mxnet", "pandas", "scikit-learn (>=0.24.2)", "scikit-optimize", "xgboost", "pytorch-ignite", "pytorch-lightning (>=1.0.2)", "skorch", "catalyst (>=21.3)", "torchaudio (0.8.0)", "allennlp (>=2.2.0)", "fastai", "keras", "tensorflow (<2.5.0)", "tensorflow-datasets", "botorch (>=0.4.0)", "torch (1.8.0+cpu)", "torchvision (0.9.0+cpu)", "torch (1.8.0)", "torchvision (0.9.0)"] optional = ["bokeh (<2.0.0)", "matplotlib (>=3.0.0)", "pandas", "plotly (>=4.0.0)", "redis", "scikit-learn (>=0.24.2)"] -testing = ["bokeh (<2.0.0)", "chainer (>=5.0.0)", "cma", "fakeredis", "lightgbm", "matplotlib (>=3.0.0)", "mlflow", "mpi4py", "mxnet", "pandas", "plotly (>=4.0.0)", "pytest", "scikit-learn (>=0.24.2)", "scikit-optimize", "xgboost", "keras", "tensorflow-datasets", "pytorch-ignite", "pytorch-lightning (>=1.0.2)", "skorch", "catalyst (>=21.3)", "torchaudio (==0.8.0)", "allennlp (>=2.2.0)", "fastai", "tensorflow (<2.5.0)", "botorch (>=0.4.0)", "torch (==1.8.0+cpu)", "torchvision (==0.9.0+cpu)", "torch (==1.8.0)", "torchvision (==0.9.0)"] +testing = ["bokeh (<2.0.0)", "chainer (>=5.0.0)", "cma", "fakeredis", "lightgbm", "matplotlib (>=3.0.0)", "mlflow", "mpi4py", "mxnet", "pandas", "plotly (>=4.0.0)", "pytest", "scikit-learn (>=0.24.2)", "scikit-optimize", "xgboost", "keras", "tensorflow-datasets", "pytorch-ignite", "pytorch-lightning (>=1.0.2)", "skorch", "catalyst (>=21.3)", "torchaudio (0.8.0)", "allennlp (>=2.2.0)", "fastai", "tensorflow (<2.5.0)", "botorch (>=0.4.0)", "torch (1.8.0+cpu)", "torchvision (0.9.0+cpu)", "torch (1.8.0)", "torchvision (0.9.0)"] tests = ["fakeredis", "pytest"] [[package]] -name = "packaging" -version = "20.9" -description = "Core utilities for Python packages" category = "main" +description = "Core utilities for Python packages" +name = "packaging" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +python-versions = ">=3.6" +version = "21.0" [package.dependencies] pyparsing = ">=2.0.2" [[package]] -name = "pandas" -version = "1.1.5" -description = "Powerful data structures for data analysis, time series, and statistics" category = "main" +description = "Powerful data structures for data analysis, time series, and statistics" +name = "pandas" optional = false -python-versions = ">=3.6.1" +python-versions = ">=3.7.1" +version = "1.3.1" [package.dependencies] numpy = ">=1.17.3" @@ -1033,35 +1109,35 @@ pytz = ">=2017.3" test = ["hypothesis (>=3.58)", "pytest (>=6.0)", "pytest-xdist"] [[package]] -name = "pandoc" -version = "1.1.0" -description = "Pandoc Documents for Python" category = "dev" +description = "Pandoc Documents for Python" +name = "pandoc" optional = false python-versions = "*" +version = "1.1.0" [package.dependencies] plumbum = "*" ply = "*" [[package]] -name = "pandocfilters" -version = "1.4.3" -description = "Utilities for writing pandoc filters in python" category = "dev" +description = "Utilities for writing pandoc filters in python" +name = "pandocfilters" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +version = "1.4.3" [[package]] -name = "parso" -version = "0.8.2" -description = "A Python Parser" category = "dev" +description = "A Python Parser" +name = "parso" optional = false python-versions = ">=3.6" +version = "0.8.2" [package.extras] -qa = ["flake8 (==3.8.3)", "mypy (==0.782)"] +qa = ["flake8 (3.8.3)", "mypy (0.782)"] testing = ["docopt", "pytest (<6.0.0)"] [[package]] @@ -1069,55 +1145,58 @@ name = "pathspec" version = "0.9.0" description = "Utility library for gitignore style pattern matching of file paths." category = "dev" +description = "Utility library for gitignore style pattern matching of file paths." +name = "pathspec" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7" [[package]] -name = "patsy" -version = "0.5.1" -description = "A Python package for describing statistical models and for building design matrices." category = "main" +description = "A Python package for describing statistical models and for building design matrices." +name = "patsy" optional = false python-versions = "*" +version = "0.5.1" [package.dependencies] numpy = ">=1.4" six = "*" [[package]] -name = "pbr" -version = "5.6.0" -description = "Python Build Reasonableness" category = "main" +description = "Python Build Reasonableness" +name = "pbr" optional = false python-versions = ">=2.6" +version = "5.6.0" [[package]] -name = "pexpect" -version = "4.8.0" -description = "Pexpect allows easy control of interactive console applications." category = "dev" +description = "Pexpect allows easy control of interactive console applications." +marker = "sys_platform != \"win32\"" +name = "pexpect" optional = false python-versions = "*" +version = "4.8.0" [package.dependencies] ptyprocess = ">=0.5" [[package]] -name = "pickleshare" -version = "0.7.5" -description = "Tiny 'shelve'-like database with concurrency support" category = "dev" +description = "Tiny 'shelve'-like database with concurrency support" +name = "pickleshare" optional = false python-versions = "*" +version = "0.7.5" [[package]] -name = "pillow" -version = "8.2.0" -description = "Python Imaging Library (Fork)" category = "main" +description = "Python Imaging Library (Fork)" +name = "pillow" optional = false python-versions = ">=3.6" +version = "8.3.1" [[package]] name = "platformdirs" @@ -1136,25 +1215,30 @@ name = "pluggy" version = "0.13.1" description = "plugin and hook calling mechanisms for python" category = "main" +description = "plugin and hook calling mechanisms for python" +name = "pluggy" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +version = "0.13.1" [package.dependencies] -importlib-metadata = {version = ">=0.12", markers = "python_version < \"3.8\""} +[package.dependencies.importlib-metadata] +python = "<3.8" +version = ">=0.12" [package.extras] dev = ["pre-commit", "tox"] [[package]] -name = "plumbum" -version = "1.7.0" -description = "Plumbum: shell combinators library" category = "dev" +description = "Plumbum: shell combinators library" +name = "plumbum" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4,>=2.7" +version = "1.7.0" [package.dependencies] -pypiwin32 = {version = "*", markers = "platform_system == \"Windows\" and platform_python_implementation != \"PyPy\""} +pypiwin32 = "*" [package.extras] dev = ["pytest", "pytest-cov", "pytest-mock", "pytest-timeout", "paramiko", "psutil"] @@ -1162,119 +1246,124 @@ docs = ["recommonmark (>=0.5.0)", "Sphinx (>=3.0.0)", "sphinx-rtd-theme (>=0.5.0 ssh = ["paramiko"] [[package]] -name = "ply" -version = "3.11" -description = "Python Lex & Yacc" category = "dev" +description = "Python Lex & Yacc" +name = "ply" optional = false python-versions = "*" +version = "3.11" [[package]] -name = "prettytable" -version = "2.1.0" -description = "A simple Python library for easily displaying tabular data in a visually appealing ASCII table format" category = "main" +description = "A simple Python library for easily displaying tabular data in a visually appealing ASCII table format" +name = "prettytable" optional = false python-versions = ">=3.6" +version = "2.1.0" [package.dependencies] -importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} wcwidth = "*" +[package.dependencies.importlib-metadata] +python = "<3.8" +version = "*" + [package.extras] tests = ["pytest", "pytest-cov"] [[package]] -name = "prompt-toolkit" -version = "3.0.18" -description = "Library for building powerful interactive command lines in Python" category = "dev" +description = "Library for building powerful interactive command lines in Python" +name = "prompt-toolkit" optional = false python-versions = ">=3.6.1" +version = "3.0.19" [package.dependencies] wcwidth = "*" [[package]] -name = "protobuf" -version = "3.15.8" -description = "Protocol Buffers" category = "main" +description = "Protocol Buffers" +name = "protobuf" optional = false python-versions = "*" +version = "3.17.3" [package.dependencies] six = ">=1.9" [[package]] -name = "ptyprocess" -version = "0.7.0" -description = "Run a subprocess in a pseudo terminal" category = "dev" +description = "Run a subprocess in a pseudo terminal" +marker = "sys_platform != \"win32\"" +name = "ptyprocess" optional = false python-versions = "*" +version = "0.7.0" [[package]] -name = "py" -version = "1.10.0" -description = "library with cross-python path, ini-parsing, io, code, log facilities" category = "main" +description = "library with cross-python path, ini-parsing, io, code, log facilities" +name = "py" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +version = "1.10.0" [[package]] -name = "pyarrow" -version = "5.0.0" -description = "Python library for Apache Arrow" category = "dev" +description = "Python library for Apache Arrow" +name = "pyarrow" optional = false python-versions = ">=3.6" +version = "5.0.0" [package.dependencies] numpy = ">=1.16.6" [[package]] -name = "pyasn1" -version = "0.4.8" -description = "ASN.1 types and codecs" category = "main" +description = "ASN.1 types and codecs" +name = "pyasn1" optional = false python-versions = "*" +version = "0.4.8" [[package]] -name = "pyasn1-modules" -version = "0.2.8" -description = "A collection of ASN.1-based protocols modules." category = "main" +description = "A collection of ASN.1-based protocols modules." +name = "pyasn1-modules" optional = false python-versions = "*" +version = "0.2.8" [package.dependencies] pyasn1 = ">=0.4.6,<0.5.0" [[package]] -name = "pycodestyle" -version = "2.7.0" -description = "Python style guide checker" category = "dev" +description = "Python style guide checker" +name = "pycodestyle" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +version = "2.7.0" [[package]] -name = "pycparser" -version = "2.20" -description = "C parser in Python" category = "dev" +description = "C parser in Python" +marker = "implementation_name == \"pypy\"" +name = "pycparser" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +version = "2.20" [[package]] -name = "pydata-sphinx-theme" -version = "0.6.3" -description = "Bootstrap-based Sphinx theme from the PyData community" category = "dev" +description = "Bootstrap-based Sphinx theme from the PyData community" +name = "pydata-sphinx-theme" optional = false python-versions = ">=3.5" +version = "0.6.3" [package.dependencies] beautifulsoup4 = "*" @@ -1282,40 +1371,43 @@ docutils = "<0.17" sphinx = "*" [package.extras] -coverage = ["pytest-cov", "codecov", "sphinx", "numpydoc", "recommonmark", "pandas", "pytest", "pytest-regressions", "beautifulsoup4", "jupyter-sphinx", "plotly", "numpy", "xarray", "docutils (==0.16)"] -test = ["sphinx", "numpydoc", "recommonmark", "pandas", "pytest", "pytest-regressions", "beautifulsoup4", "jupyter-sphinx", "plotly", "numpy", "xarray", "docutils (==0.16)"] +coverage = ["pytest-cov", "codecov", "sphinx", "numpydoc", "recommonmark", "pandas", "pytest", "pytest-regressions", "beautifulsoup4", "jupyter-sphinx", "plotly", "numpy", "xarray", "docutils (0.16)"] +test = ["sphinx", "numpydoc", "recommonmark", "pandas", "pytest", "pytest-regressions", "beautifulsoup4", "jupyter-sphinx", "plotly", "numpy", "xarray", "docutils (0.16)"] [[package]] -name = "pydeprecate" -version = "0.3.1" -description = "Deprecation tooling" category = "main" +description = "Deprecation tooling" +name = "pydeprecate" optional = false python-versions = ">=3.6" +version = "0.3.1" [[package]] -name = "pyflakes" -version = "2.3.1" -description = "passive checker of Python programs" category = "dev" +description = "passive checker of Python programs" +name = "pyflakes" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +version = "2.3.1" [[package]] -name = "pygments" -version = "2.8.1" -description = "Pygments is a syntax highlighting package written in Python." category = "dev" +description = "Pygments is a syntax highlighting package written in Python." +name = "pygments" optional = false python-versions = ">=3.5" +version = "2.9.0" [[package]] name = "pylint" version = "2.11.1" description = "python code static checker" category = "dev" +description = "python code static checker" +name = "pylint" optional = false python-versions = "~=3.6" +version = "2.9.6" [package.dependencies] astroid = ">=2.8.0,<2.9" @@ -1327,85 +1419,94 @@ toml = ">=0.7.1" typing-extensions = {version = ">=3.10.0", markers = "python_version < \"3.10\""} [[package]] -name = "pyparsing" -version = "2.4.7" -description = "Python parsing module" category = "main" +description = "Python parsing module" +name = "pyparsing" optional = false python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*" +version = "2.4.7" [[package]] -name = "pyperclip" -version = "1.8.2" -description = "A cross-platform clipboard module for Python. (Only handles plain text for now.)" category = "main" +description = "A cross-platform clipboard module for Python. (Only handles plain text for now.)" +name = "pyperclip" optional = false python-versions = "*" +version = "1.8.2" [[package]] -name = "pypiwin32" -version = "223" -description = "" category = "dev" +description = "" +marker = "platform_system == \"Windows\" and platform_python_implementation != \"PyPy\"" +name = "pypiwin32" optional = false python-versions = "*" +version = "223" [package.dependencies] pywin32 = ">=223" [[package]] -name = "pyreadline" -version = "2.1" -description = "A python implmementation of GNU readline." category = "main" +description = "A python implmementation of GNU readline." +marker = "sys_platform == \"win32\" and python_version < \"3.8\"" +name = "pyreadline" optional = false python-versions = "*" +version = "2.1" [[package]] -name = "pyreadline3" -version = "3.3" -description = "A python implementation of GNU readline." category = "main" +description = "A python implementation of GNU readline." +marker = "sys_platform == \"win32\" and python_version >= \"3.8\"" +name = "pyreadline3" optional = false python-versions = "*" +version = "3.3" [[package]] -name = "pyrsistent" -version = "0.17.3" -description = "Persistent/Functional/Immutable data structures" category = "dev" +description = "Persistent/Functional/Immutable data structures" +name = "pyrsistent" optional = false -python-versions = ">=3.5" +python-versions = ">=3.6" +version = "0.18.0" [[package]] name = "pytest" version = "6.2.5" description = "pytest: simple powerful testing with Python" category = "main" +description = "pytest: simple powerful testing with Python" +name = "pytest" optional = false python-versions = ">=3.6" +version = "6.2.4" [package.dependencies] -atomicwrites = {version = ">=1.0", markers = "sys_platform == \"win32\""} +atomicwrites = ">=1.0" attrs = ">=19.2.0" -colorama = {version = "*", markers = "sys_platform == \"win32\""} -importlib-metadata = {version = ">=0.12", markers = "python_version < \"3.8\""} +colorama = "*" iniconfig = "*" packaging = "*" pluggy = ">=0.12,<2.0" py = ">=1.8.2" toml = "*" +[package.dependencies.importlib-metadata] +python = "<3.8" +version = ">=0.12" + [package.extras] testing = ["argcomplete", "hypothesis (>=3.56)", "mock", "nose", "requests", "xmlschema"] [[package]] -name = "pytest-cov" -version = "2.12.1" -description = "Pytest plugin for measuring coverage." category = "dev" +description = "Pytest plugin for measuring coverage." +name = "pytest-cov" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +version = "2.12.1" [package.dependencies] coverage = ">=5.2.1" @@ -1416,35 +1517,35 @@ toml = "*" testing = ["fields", "hunter", "process-tests", "six", "pytest-xdist", "virtualenv"] [[package]] -name = "pytest-forked" -version = "1.3.0" -description = "run tests in isolated forked subprocesses" category = "dev" +description = "run tests in isolated forked subprocesses" +name = "pytest-forked" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +version = "1.3.0" [package.dependencies] py = "*" pytest = ">=3.10" [[package]] -name = "pytest-github-actions-annotate-failures" -version = "0.1.3" -description = "pytest plugin to annotate failed tests with a workflow command for GitHub Actions" category = "main" +description = "pytest plugin to annotate failed tests with a workflow command for GitHub Actions" +name = "pytest-github-actions-annotate-failures" optional = true python-versions = "*" +version = "0.1.3" [package.dependencies] pytest = ">=4.0.0" [[package]] -name = "pytest-sugar" -version = "0.9.4" -description = "pytest-sugar is a plugin for pytest that changes the default look and feel of pytest (e.g. progressbar, show tests that fail instantly)." category = "dev" +description = "pytest-sugar is a plugin for pytest that changes the default look and feel of pytest (e.g. progressbar, show tests that fail instantly)." +name = "pytest-sugar" optional = false python-versions = "*" +version = "0.9.4" [package.dependencies] packaging = ">=14.1" @@ -1452,12 +1553,12 @@ pytest = ">=2.9" termcolor = ">=1.1.0" [[package]] -name = "pytest-xdist" -version = "2.3.0" -description = "pytest xdist plugin for distributed testing and loop-on-failing modes" category = "dev" +description = "pytest xdist plugin for distributed testing and loop-on-failing modes" +name = "pytest-xdist" optional = false python-versions = ">=3.6" +version = "2.3.0" [package.dependencies] execnet = ">=1.1" @@ -1469,34 +1570,37 @@ psutil = ["psutil (>=3.0)"] testing = ["filelock"] [[package]] -name = "python-dateutil" -version = "2.8.1" -description = "Extensions to the standard Python datetime module" category = "main" +description = "Extensions to the standard Python datetime module" +name = "python-dateutil" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7" +version = "2.8.2" [package.dependencies] six = ">=1.5" [[package]] -name = "python-editor" -version = "1.0.4" -description = "Programmatically open an editor, capture the result." category = "main" +description = "Programmatically open an editor, capture the result." +name = "python-editor" optional = false python-versions = "*" +version = "1.0.4" [[package]] name = "pytorch-lightning" version = "1.4.7" description = "PyTorch Lightning is the lightweight PyTorch wrapper for ML researchers. Scale your models. Write less boilerplate." category = "main" +description = "PyTorch Lightning is the lightweight PyTorch wrapper for ML researchers. Scale your models. Write less boilerplate." +name = "pytorch-lightning" optional = false python-versions = ">=3.6" +version = "1.4.1" [package.dependencies] -fsspec = {version = ">=2021.05.0,<2021.06.0 || >2021.06.0", extras = ["http"]} +PyYAML = ">=5.1" future = ">=0.17.1" numpy = ">=1.17.2" packaging = ">=17.0" @@ -1508,59 +1612,64 @@ torchmetrics = ">=0.4.0" tqdm = ">=4.41.0" typing-extensions = "*" +[package.dependencies.fsspec] +extras = ["http"] +version = ">=2021.05.0,<2021.06.0 || >2021.06.0" + [package.extras] -all = ["matplotlib (>3.1)", "horovod (>=0.21.2)", "omegaconf (>=2.0.1)", "torchtext (>=0.7)", "onnx (>=1.7.0)", "onnxruntime (>=1.3.0)", "hydra-core (>=1.0)", "jsonargparse[signatures] (>=3.17.0)", "gcsfs (>=2021.5.0)", "neptune-client (>=0.4.109)", "comet-ml (>=3.1.12)", "mlflow (>=1.0.0)", "test-tube (>=0.7.5)", "wandb (>=0.8.21)", "coverage (>5.2.0)", "codecov (>=2.1)", "pytest (>=6.0)", "check-manifest", "twine (==3.2)", "mypy (>=0.900)", "pre-commit (>=1.0)", "cloudpickle (>=1.3)", "scikit-learn (>0.22.1)", "scikit-image (>0.17.1)", "nltk (>=3.3)", "pandas", "torchvision (>=0.7)", "gym (>=0.17.0)", "ipython"] -cpu = ["matplotlib (>3.1)", "omegaconf (>=2.0.1)", "torchtext (>=0.7)", "onnx (>=1.7.0)", "onnxruntime (>=1.3.0)", "hydra-core (>=1.0)", "jsonargparse[signatures] (>=3.17.0)", "gcsfs (>=2021.5.0)", "neptune-client (>=0.4.109)", "comet-ml (>=3.1.12)", "mlflow (>=1.0.0)", "test-tube (>=0.7.5)", "wandb (>=0.8.21)", "coverage (>5.2.0)", "codecov (>=2.1)", "pytest (>=6.0)", "check-manifest", "twine (==3.2)", "mypy (>=0.900)", "pre-commit (>=1.0)", "cloudpickle (>=1.3)", "scikit-learn (>0.22.1)", "scikit-image (>0.17.1)", "nltk (>=3.3)", "pandas", "torchvision (>=0.7)", "gym (>=0.17.0)", "ipython"] -cpu-extra = ["matplotlib (>3.1)", "omegaconf (>=2.0.1)", "torchtext (>=0.7)", "onnx (>=1.7.0)", "onnxruntime (>=1.3.0)", "hydra-core (>=1.0)", "jsonargparse[signatures] (>=3.17.0)", "gcsfs (>=2021.5.0)"] -dev = ["matplotlib (>3.1)", "horovod (>=0.21.2)", "omegaconf (>=2.0.1)", "torchtext (>=0.7)", "onnx (>=1.7.0)", "onnxruntime (>=1.3.0)", "hydra-core (>=1.0)", "jsonargparse[signatures] (>=3.17.0)", "gcsfs (>=2021.5.0)", "neptune-client (>=0.4.109)", "comet-ml (>=3.1.12)", "mlflow (>=1.0.0)", "test-tube (>=0.7.5)", "wandb (>=0.8.21)", "coverage (>5.2.0)", "codecov (>=2.1)", "pytest (>=6.0)", "check-manifest", "twine (==3.2)", "mypy (>=0.900)", "pre-commit (>=1.0)", "cloudpickle (>=1.3)", "scikit-learn (>0.22.1)", "scikit-image (>0.17.1)", "nltk (>=3.3)", "pandas"] +all = ["matplotlib (>3.1)", "horovod (>=0.21.2)", "omegaconf (>=2.0.1)", "torchtext (>=0.7)", "onnx (>=1.7.0)", "onnxruntime (>=1.3.0)", "hydra-core (>=1.0)", "jsonargparse (>=3.17.0)", "gcsfs (>=2021.5.0)", "neptune-client (>=0.4.109)", "comet-ml (>=3.1.12)", "mlflow (>=1.0.0)", "test-tube (>=0.7.5)", "wandb (>=0.8.21)", "coverage (>5.2.0)", "codecov (>=2.1)", "pytest (>=6.0)", "check-manifest", "twine (3.2)", "mypy (>=0.900)", "pre-commit (>=1.0)", "cloudpickle (>=1.3)", "scikit-learn (>0.22.1)", "scikit-image (>0.17.1)", "nltk (>=3.3)", "pandas", "torchvision (>=0.7)", "gym (>=0.17.0)", "ipython"] +cpu = ["matplotlib (>3.1)", "omegaconf (>=2.0.1)", "torchtext (>=0.7)", "onnx (>=1.7.0)", "onnxruntime (>=1.3.0)", "hydra-core (>=1.0)", "jsonargparse (>=3.17.0)", "gcsfs (>=2021.5.0)", "neptune-client (>=0.4.109)", "comet-ml (>=3.1.12)", "mlflow (>=1.0.0)", "test-tube (>=0.7.5)", "wandb (>=0.8.21)", "coverage (>5.2.0)", "codecov (>=2.1)", "pytest (>=6.0)", "check-manifest", "twine (3.2)", "mypy (>=0.900)", "pre-commit (>=1.0)", "cloudpickle (>=1.3)", "scikit-learn (>0.22.1)", "scikit-image (>0.17.1)", "nltk (>=3.3)", "pandas", "torchvision (>=0.7)", "gym (>=0.17.0)", "ipython"] +cpu-extra = ["matplotlib (>3.1)", "omegaconf (>=2.0.1)", "torchtext (>=0.7)", "onnx (>=1.7.0)", "onnxruntime (>=1.3.0)", "hydra-core (>=1.0)", "jsonargparse (>=3.17.0)", "gcsfs (>=2021.5.0)"] +dev = ["matplotlib (>3.1)", "horovod (>=0.21.2)", "omegaconf (>=2.0.1)", "torchtext (>=0.7)", "onnx (>=1.7.0)", "onnxruntime (>=1.3.0)", "hydra-core (>=1.0)", "jsonargparse (>=3.17.0)", "gcsfs (>=2021.5.0)", "neptune-client (>=0.4.109)", "comet-ml (>=3.1.12)", "mlflow (>=1.0.0)", "test-tube (>=0.7.5)", "wandb (>=0.8.21)", "coverage (>5.2.0)", "codecov (>=2.1)", "pytest (>=6.0)", "check-manifest", "twine (3.2)", "mypy (>=0.900)", "pre-commit (>=1.0)", "cloudpickle (>=1.3)", "scikit-learn (>0.22.1)", "scikit-image (>0.17.1)", "nltk (>=3.3)", "pandas"] examples = ["torchvision (>=0.7)", "gym (>=0.17.0)", "ipython"] -extra = ["matplotlib (>3.1)", "horovod (>=0.21.2)", "omegaconf (>=2.0.1)", "torchtext (>=0.7)", "onnx (>=1.7.0)", "onnxruntime (>=1.3.0)", "hydra-core (>=1.0)", "jsonargparse[signatures] (>=3.17.0)", "gcsfs (>=2021.5.0)"] +extra = ["matplotlib (>3.1)", "horovod (>=0.21.2)", "omegaconf (>=2.0.1)", "torchtext (>=0.7)", "onnx (>=1.7.0)", "onnxruntime (>=1.3.0)", "hydra-core (>=1.0)", "jsonargparse (>=3.17.0)", "gcsfs (>=2021.5.0)"] loggers = ["neptune-client (>=0.4.109)", "comet-ml (>=3.1.12)", "mlflow (>=1.0.0)", "test-tube (>=0.7.5)", "wandb (>=0.8.21)"] -test = ["coverage (>5.2.0)", "codecov (>=2.1)", "pytest (>=6.0)", "check-manifest", "twine (==3.2)", "mypy (>=0.900)", "pre-commit (>=1.0)", "cloudpickle (>=1.3)", "scikit-learn (>0.22.1)", "scikit-image (>0.17.1)", "nltk (>=3.3)", "pandas"] +test = ["coverage (>5.2.0)", "codecov (>=2.1)", "pytest (>=6.0)", "check-manifest", "twine (3.2)", "mypy (>=0.900)", "pre-commit (>=1.0)", "cloudpickle (>=1.3)", "scikit-learn (>0.22.1)", "scikit-image (>0.17.1)", "nltk (>=3.3)", "pandas"] [[package]] -name = "pytz" -version = "2021.1" -description = "World timezone definitions, modern and historical" category = "main" +description = "World timezone definitions, modern and historical" +name = "pytz" optional = false python-versions = "*" +version = "2021.1" [[package]] -name = "pywin32" -version = "300" -description = "Python for Window Extensions" category = "dev" +description = "Python for Window Extensions" +marker = "platform_system == \"Windows\" and platform_python_implementation != \"PyPy\" or sys_platform == \"win32\"" +name = "pywin32" optional = false python-versions = "*" +version = "301" [[package]] -name = "pyyaml" -version = "5.3.1" -description = "YAML parser and emitter for Python" category = "main" +description = "YAML parser and emitter for Python" +name = "pyyaml" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*" +version = "5.4.1" [[package]] -name = "pyzmq" -version = "22.0.3" -description = "Python bindings for 0MQ" category = "dev" +description = "Python bindings for 0MQ" +name = "pyzmq" optional = false python-versions = ">=3.6" +version = "22.2.1" [package.dependencies] -cffi = {version = "*", markers = "implementation_name == \"pypy\""} -py = {version = "*", markers = "implementation_name == \"pypy\""} +cffi = "*" +py = "*" [[package]] -name = "recommonmark" -version = "0.7.1" -description = "A docutils-compatibility bridge to CommonMark, enabling you to write CommonMark inside of Docutils & Sphinx projects." category = "dev" +description = "A docutils-compatibility bridge to CommonMark, enabling you to write CommonMark inside of Docutils & Sphinx projects." +name = "recommonmark" optional = false python-versions = "*" +version = "0.7.1" [package.dependencies] commonmark = ">=0.8.1" @@ -1568,64 +1677,71 @@ docutils = ">=0.11" sphinx = ">=1.3.1" [[package]] -name = "regex" -version = "2021.4.4" -description = "Alternative regular expression module, to replace re." category = "dev" +description = "Alternative regular expression module, to replace re." +name = "regex" optional = false python-versions = "*" +version = "2021.8.3" [[package]] -name = "requests" -version = "2.25.1" -description = "Python HTTP for Humans." category = "main" +description = "Python HTTP for Humans." +name = "requests" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*" +version = "2.26.0" [package.dependencies] certifi = ">=2017.4.17" -chardet = ">=3.0.2,<5" -idna = ">=2.5,<3" urllib3 = ">=1.21.1,<1.27" +[package.dependencies.charset-normalizer] +python = ">=3" +version = ">=2.0.0,<2.1.0" + +[package.dependencies.idna] +python = ">=3" +version = ">=2.5,<4" + [package.extras] -security = ["pyOpenSSL (>=0.14)", "cryptography (>=1.3.4)"] -socks = ["PySocks (>=1.5.6,!=1.5.7)", "win-inet-pton"] +socks = ["PySocks (>=1.5.6,<1.5.7 || >1.5.7)", "win-inet-pton"] +use_chardet_on_py3 = ["chardet (>=3.0.2,<5)"] [[package]] -name = "requests-oauthlib" -version = "1.3.0" -description = "OAuthlib authentication support for Requests." category = "main" +description = "OAuthlib authentication support for Requests." +name = "requests-oauthlib" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +version = "1.3.0" [package.dependencies] oauthlib = ">=3.0.0" requests = ">=2.0.0" [package.extras] -rsa = ["oauthlib[signedtoken] (>=3.0.0)"] +rsa = ["oauthlib (>=3.0.0)"] [[package]] -name = "rsa" -version = "4.7.2" -description = "Pure-Python RSA implementation" category = "main" +description = "Pure-Python RSA implementation" +marker = "python_version >= \"3.6\"" +name = "rsa" optional = false python-versions = ">=3.5, <4" +version = "4.7.2" [package.dependencies] pyasn1 = ">=0.1.3" [[package]] -name = "scikit-learn" -version = "0.24.2" -description = "A set of python modules for machine learning and data mining" category = "main" +description = "A set of python modules for machine learning and data mining" +name = "scikit-learn" optional = false python-versions = ">=3.6" +version = "0.24.2" [package.dependencies] joblib = ">=0.11" @@ -1640,58 +1756,63 @@ examples = ["matplotlib (>=2.1.1)", "scikit-image (>=0.13)", "pandas (>=0.25.0)" tests = ["matplotlib (>=2.1.1)", "scikit-image (>=0.13)", "pandas (>=0.25.0)", "pytest (>=5.0.1)", "pytest-cov (>=2.9.0)", "flake8 (>=3.8.2)", "mypy (>=0.770)", "pyamg (>=4.0.0)"] [[package]] -name = "scipy" -version = "1.5.4" -description = "SciPy: Scientific Library for Python" category = "main" +description = "SciPy: Scientific Library for Python" +name = "scipy" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" +version = "1.6.1" [package.dependencies] numpy = ">=1.16.5" [[package]] -name = "six" -version = "1.15.0" -description = "Python 2 and 3 compatibility utilities" category = "main" +description = "Python 2 and 3 compatibility utilities" +name = "six" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*" +version = "1.16.0" [[package]] -name = "snowballstemmer" -version = "2.1.0" -description = "This package provides 29 stemmers for 28 languages generated from Snowball algorithms." category = "dev" +description = "This package provides 29 stemmers for 28 languages generated from Snowball algorithms." +name = "snowballstemmer" optional = false python-versions = "*" +version = "2.1.0" [[package]] -name = "soupsieve" -version = "2.2.1" -description = "A modern CSS selector implementation for Beautiful Soup." category = "dev" +description = "A modern CSS selector implementation for Beautiful Soup." +marker = "python_version >= \"3.0\"" +name = "soupsieve" optional = false python-versions = ">=3.6" +version = "2.2.1" [[package]] name = "sphinx" version = "4.2.0" description = "Python documentation generator" category = "dev" +description = "Python documentation generator" +name = "sphinx" optional = false python-versions = ">=3.6" +version = "4.1.2" [package.dependencies] +Jinja2 = ">=2.3" +Pygments = ">=2.0" alabaster = ">=0.7,<0.8" babel = ">=1.3" -colorama = {version = ">=0.3.5", markers = "sys_platform == \"win32\""} +colorama = ">=0.3.5" docutils = ">=0.14,<0.18" imagesize = "*" -Jinja2 = ">=2.3" packaging = "*" -Pygments = ">=2.0" requests = ">=2.5.0" +setuptools = "*" snowballstemmer = ">=1.1" sphinxcontrib-applehelp = "*" sphinxcontrib-devhelp = "*" @@ -1706,87 +1827,92 @@ lint = ["flake8 (>=3.5.0)", "isort", "mypy (>=0.900)", "docutils-stubs", "types- test = ["pytest", "pytest-cov", "html5lib", "cython", "typed-ast"] [[package]] -name = "sphinxcontrib-applehelp" -version = "1.0.2" -description = "sphinxcontrib-applehelp is a sphinx extension which outputs Apple help books" category = "dev" +description = "sphinxcontrib-applehelp is a sphinx extension which outputs Apple help books" +name = "sphinxcontrib-applehelp" optional = false python-versions = ">=3.5" +version = "1.0.2" [package.extras] lint = ["flake8", "mypy", "docutils-stubs"] test = ["pytest"] [[package]] -name = "sphinxcontrib-devhelp" -version = "1.0.2" -description = "sphinxcontrib-devhelp is a sphinx extension which outputs Devhelp document." category = "dev" +description = "sphinxcontrib-devhelp is a sphinx extension which outputs Devhelp document." +name = "sphinxcontrib-devhelp" optional = false python-versions = ">=3.5" +version = "1.0.2" [package.extras] lint = ["flake8", "mypy", "docutils-stubs"] test = ["pytest"] [[package]] -name = "sphinxcontrib-htmlhelp" -version = "2.0.0" -description = "sphinxcontrib-htmlhelp is a sphinx extension which renders HTML help files" category = "dev" +description = "sphinxcontrib-htmlhelp is a sphinx extension which renders HTML help files" +name = "sphinxcontrib-htmlhelp" optional = false python-versions = ">=3.6" +version = "2.0.0" [package.extras] lint = ["flake8", "mypy", "docutils-stubs"] test = ["pytest", "html5lib"] [[package]] -name = "sphinxcontrib-jsmath" -version = "1.0.1" -description = "A sphinx extension which renders display math in HTML via JavaScript" category = "dev" +description = "A sphinx extension which renders display math in HTML via JavaScript" +name = "sphinxcontrib-jsmath" optional = false python-versions = ">=3.5" +version = "1.0.1" [package.extras] test = ["pytest", "flake8", "mypy"] [[package]] -name = "sphinxcontrib-qthelp" -version = "1.0.3" -description = "sphinxcontrib-qthelp is a sphinx extension which outputs QtHelp document." category = "dev" +description = "sphinxcontrib-qthelp is a sphinx extension which outputs QtHelp document." +name = "sphinxcontrib-qthelp" optional = false python-versions = ">=3.5" +version = "1.0.3" [package.extras] lint = ["flake8", "mypy", "docutils-stubs"] test = ["pytest"] [[package]] -name = "sphinxcontrib-serializinghtml" -version = "1.1.5" -description = "sphinxcontrib-serializinghtml is a sphinx extension which outputs \"serialized\" HTML files (json and pickle)." category = "dev" +description = "sphinxcontrib-serializinghtml is a sphinx extension which outputs \"serialized\" HTML files (json and pickle)." +name = "sphinxcontrib-serializinghtml" optional = false python-versions = ">=3.5" +version = "1.1.5" [package.extras] lint = ["flake8", "mypy", "docutils-stubs"] test = ["pytest"] [[package]] -name = "sqlalchemy" -version = "1.4.11" -description = "Database Abstraction Library" category = "main" +description = "Database Abstraction Library" +name = "sqlalchemy" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7" +version = "1.4.22" [package.dependencies] -greenlet = {version = "!=0.4.17", markers = "python_version >= \"3\""} -importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} +[package.dependencies.greenlet] +python = ">=3" +version = "!=0.4.17" + +[package.dependencies.importlib-metadata] +python = "<3.8" +version = "*" [package.extras] aiomysql = ["greenlet (!=0.4.17)", "aiomysql"] @@ -1809,12 +1935,12 @@ pymysql = ["pymysql (<1)", "pymysql"] sqlcipher = ["sqlcipher3-binary"] [[package]] -name = "statsmodels" -version = "0.12.2" -description = "Statistical computations and models for Python" category = "main" +description = "Statistical computations and models for Python" +name = "statsmodels" optional = false python-versions = ">=3.6" +version = "0.12.2" [package.dependencies] numpy = ">=1.15" @@ -1828,24 +1954,27 @@ develop = ["cython (>=0.29)"] docs = ["sphinx", "nbconvert", "jupyter-client", "ipykernel", "matplotlib", "nbformat", "numpydoc", "pandas-datareader"] [[package]] -name = "stevedore" -version = "3.3.0" -description = "Manage dynamic plugins for Python applications" category = "main" +description = "Manage dynamic plugins for Python applications" +name = "stevedore" optional = false python-versions = ">=3.6" +version = "3.3.0" [package.dependencies] -importlib-metadata = {version = ">=1.7.0", markers = "python_version < \"3.8\""} pbr = ">=2.0.0,<2.1.0 || >2.1.0" +[package.dependencies.importlib-metadata] +python = "<3.8" +version = ">=1.7.0" + [[package]] -name = "tensorboard" -version = "2.4.1" -description = "TensorBoard lets you watch Tensors Flow" category = "main" +description = "TensorBoard lets you watch Tensors Flow" +name = "tensorboard" optional = false python-versions = ">= 2.7, != 3.0.*, != 3.1.*" +version = "2.4.1" [package.dependencies] absl-py = ">=0.4" @@ -1856,80 +1985,84 @@ markdown = ">=2.6.8" numpy = ">=1.12.0" protobuf = ">=3.6.0" requests = ">=2.21.0,<3" +setuptools = ">=41.0.0" six = ">=1.10.0" tensorboard-plugin-wit = ">=1.6.0" werkzeug = ">=0.11.15" +[package.dependencies.wheel] +python = ">=3" +version = ">=0.26" + [[package]] -name = "tensorboard-plugin-wit" -version = "1.8.0" -description = "What-If Tool TensorBoard plugin." category = "main" +description = "What-If Tool TensorBoard plugin." +name = "tensorboard-plugin-wit" optional = false python-versions = "*" +version = "1.8.0" [[package]] -name = "termcolor" -version = "1.1.0" -description = "ANSII Color formatting for output in terminal." category = "dev" +description = "ANSII Color formatting for output in terminal." +name = "termcolor" optional = false python-versions = "*" +version = "1.1.0" [[package]] -name = "testpath" -version = "0.4.4" -description = "Test utilities for code working with files and commands" category = "dev" +description = "Test utilities for code working with files and commands" +name = "testpath" optional = false -python-versions = "*" +python-versions = ">= 3.5" +version = "0.5.0" [package.extras] -test = ["pathlib2"] +test = ["pytest", "pathlib2"] [[package]] -name = "threadpoolctl" -version = "2.1.0" -description = "threadpoolctl" category = "main" +description = "threadpoolctl" +name = "threadpoolctl" optional = false -python-versions = ">=3.5" +python-versions = ">=3.6" +version = "2.2.0" [[package]] -name = "toml" -version = "0.10.2" -description = "Python Library for Tom's Obvious, Minimal Language" category = "main" +description = "Python Library for Tom's Obvious, Minimal Language" +name = "toml" optional = false python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*" +version = "0.10.2" [[package]] -name = "tomli" -version = "1.0.4" -description = "A lil' TOML parser" category = "dev" +description = "A lil' TOML parser" +name 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03867f48..52df6c82 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -52,7 +52,7 @@ documentation = "https://pytorch-forecasting.readthedocs.io" homepage = "https://pytorch-forecasting.readthedocs.io" [tool.poetry.dependencies] -python= "^3.7.1" +python = "^3.7.1" torch = "^1.7" pytorch-lightning = "^1.2.4" From 4cfb966698858126b5a01675ce5f65b38fd46693 Mon Sep 17 00:00:00 2001 From: Jan Beitner Date: Mon, 20 Sep 2021 17:10:07 +0100 Subject: [PATCH 3/9] Update dependencies --- poetry.lock | 2146 +++++++++++++++++++++++------------------------- pyproject.toml | 4 +- 2 files changed, 1044 insertions(+), 1106 deletions(-) diff --git a/poetry.lock b/poetry.lock index db99d777..4f93818c 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,21 +1,21 @@ [[package]] -category = "main" -description = "Abseil Python Common Libraries, see https://github.com/abseil/abseil-py." name = "absl-py" +version = "0.13.0" +description = "Abseil Python Common Libraries, see https://github.com/abseil/abseil-py." +category = "main" optional = false python-versions = "*" -version = "0.13.0" [package.dependencies] six = "*" [[package]] -category = "main" -description = "Async http client/server framework (asyncio)" name = "aiohttp" +version = "3.7.4.post0" +description = "Async http client/server framework (asyncio)" +category = "main" optional = false python-versions = ">=3.6" -version = "3.7.4.post0" [package.dependencies] async-timeout = ">=3.0,<4.0" @@ -29,28 +29,34 @@ yarl = ">=1.0,<2.0" speedups = ["aiodns", "brotlipy", "cchardet"] [[package]] -category = "dev" -description = "A configurable sidebar-enabled Sphinx theme" name = "alabaster" +version = "0.7.12" +description = "A configurable sidebar-enabled Sphinx theme" +category = "dev" optional = false python-versions = "*" -version = "0.7.12" [[package]] -category = "main" -description = "A database migration tool for SQLAlchemy." name = "alembic" +version = "1.7.3" +description = "A database migration tool for SQLAlchemy." +category = "main" optional = false -python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7" -version = "1.6.5" +python-versions = ">=3.6" [package.dependencies] +importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} +importlib-resources = {version = "*", markers = "python_version < \"3.9\""} Mako = "*" SQLAlchemy = ">=1.3.0" -python-dateutil = "*" -python-editor = ">=0.3" + +[package.extras] +tz = ["python-dateutil"] [[package]] +name = "appnope" +version = "0.1.2" +description = "Disable App Nap on macOS >= 10.9" category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" @@ -60,12 +66,14 @@ name = "appnope" version = "0.1.2" description = "Disable App Nap on macOS >= 10.9" category = "dev" -description = "Disable App Nap on macOS >= 10.9" -marker = "sys_platform == \"darwin\" or platform_system == \"Darwin\"" -name = "appnope" optional = false python-versions = "*" -version = "0.1.2" + +[package.dependencies] +importlib-metadata = {version = ">=0.23,<5", markers = "python_version == \"3.7\""} + +[package.extras] +test = ["coverage", "flake8", "pexpect", "wheel"] [[package]] name = "astroid" @@ -74,9 +82,11 @@ description = "An abstract syntax tree for Python with inference support." category = "dev" description = "An abstract syntax tree for Python with inference support." name = "astroid" +version = "2.8.0" +description = "An abstract syntax tree for Python with inference support." +category = "dev" optional = false python-versions = "~=3.6" -version = "2.6.6" [package.dependencies] lazy-object-proxy = ">=1.4.0" @@ -84,84 +94,73 @@ typed-ast = {version = ">=1.4.0,<1.5", markers = "implementation_name == \"cpyth typing-extensions = {version = ">=3.10", markers = "python_version < \"3.10\""} wrapt = ">=1.11,<1.13" -[package.dependencies.typed-ast] -python = "<3.8" -version = ">=1.4.0,<1.5" - -[package.dependencies.typing-extensions] -python = "<3.8" -version = ">=3.7.4" - -[[package]] -category = "dev" -description = "Async generators and context managers for Python 3.5+" -name = "async-generator" -optional = false -python-versions = ">=3.5" -version = "1.10" - [[package]] -category = "main" -description = "Timeout context manager for asyncio programs" name = "async-timeout" +version = "3.0.1" +description = "Timeout context manager for asyncio programs" +category = "main" optional = false python-versions = ">=3.5.3" -version = "3.0.1" [[package]] -category = "main" -description = "Atomic file writes." -marker = "sys_platform == \"win32\"" name = "atomicwrites" +version = "1.4.0" +description = "Atomic file writes." +category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "1.4.0" [[package]] -category = "main" -description = "Classes Without Boilerplate" name = "attrs" +version = "21.2.0" +description = "Classes Without Boilerplate" +category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" -version = "21.2.0" [package.extras] -dev = ["coverage (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit"] +dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit"] docs = ["furo", "sphinx", "zope.interface", "sphinx-notfound-page"] -tests = ["coverage (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface"] -tests_no_zope = ["coverage (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins"] +tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface"] +tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins"] + +[[package]] +name = "autopage" +version = "0.4.0" +description = "A library to provide automatic paging for console output" +category = "main" +optional = false +python-versions = ">=3.6" [[package]] -category = "dev" -description = "Internationalization utilities" name = "babel" +version = "2.9.1" +description = "Internationalization utilities" +category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "2.9.1" [package.dependencies] pytz = ">=2015.7" [[package]] -category = "dev" -description = "Specifications for callback functions passed in to an API" name = "backcall" +version = "0.2.0" +description = "Specifications for callback functions passed in to an API" +category = "dev" optional = false python-versions = "*" -version = "0.2.0" [[package]] -category = "dev" -description = "Screen-scraping library" name = "beautifulsoup4" +version = "4.10.0" +description = "Screen-scraping library" +category = "dev" optional = false -python-versions = "*" -version = "4.9.3" +python-versions = ">3.0.0" [package.dependencies] -[package.dependencies.soupsieve] -python = ">=3.0" -version = ">1.2" +soupsieve = ">1.2" [package.extras] html5lib = ["html5lib"] @@ -174,9 +173,11 @@ description = "The uncompromising code formatter." category = "dev" description = "The uncompromising code formatter." name = "black" +version = "21.9b0" +description = "The uncompromising code formatter." +category = "dev" optional = false python-versions = ">=3.6.2" -version = "21.7b0" [package.dependencies] click = ">=7.1.2" @@ -199,12 +200,12 @@ python2 = ["typed-ast (>=1.4.2)"] uvloop = ["uvloop (>=0.15.2)"] [[package]] -category = "dev" -description = "An easy safelist-based HTML-sanitizing tool." name = "bleach" +version = "4.1.0" +description = "An easy safelist-based HTML-sanitizing tool." +category = "dev" optional = false python-versions = ">=3.6" -version = "4.0.0" [package.dependencies] packaging = "*" @@ -212,250 +213,234 @@ six = ">=1.9.0" webencodings = "*" [[package]] -category = "main" -description = "Extensible memoizing collections and decorators" name = "cachetools" +version = "4.2.2" +description = "Extensible memoizing collections and decorators" +category = "main" optional = false python-versions = "~=3.5" -version = "4.2.2" [[package]] -category = "main" -description = "Python package for providing Mozilla's CA Bundle." name = "certifi" +version = "2021.5.30" +description = "Python package for providing Mozilla's CA Bundle." +category = "main" optional = false python-versions = "*" -version = "2021.5.30" [[package]] -category = "dev" -description = "Foreign Function Interface for Python calling C code." -marker = "implementation_name == \"pypy\"" name = "cffi" +version = "1.14.6" +description = "Foreign Function Interface for Python calling C code." +category = "dev" optional = false python-versions = "*" -version = "1.14.6" [package.dependencies] pycparser = "*" [[package]] -category = "main" -description = "Universal encoding detector for Python 2 and 3" name = "chardet" +version = "4.0.0" +description = "Universal encoding detector for Python 2 and 3" +category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" -version = "4.0.0" [[package]] -category = "main" -description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet." -marker = "python_version >= \"3\"" name = "charset-normalizer" +version = "2.0.6" +description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet." +category = "main" optional = false python-versions = ">=3.5.0" -version = "2.0.4" [package.extras] unicode_backport = ["unicodedata2"] [[package]] -category = "dev" -description = "Composable command line interface toolkit" name = "click" +version = "8.0.1" +description = "Composable command line interface toolkit" +category = "dev" optional = false python-versions = ">=3.6" -version = "8.0.1" [package.dependencies] -colorama = "*" - -[package.dependencies.importlib-metadata] -python = "<3.8" -version = "*" +colorama = {version = "*", markers = "platform_system == \"Windows\""} +importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} [[package]] -category = "main" -description = "Command Line Interface Formulation Framework" name = "cliff" +version = "3.9.0" +description = "Command Line Interface Formulation Framework" +category = "main" optional = false python-versions = ">=3.6" -version = "3.8.0" [package.dependencies] -PrettyTable = ">=0.7.2" -PyYAML = ">=3.12" +autopage = ">=0.4.0" cmd2 = ">=1.0.0" pbr = ">=2.0.0,<2.1.0 || >2.1.0" +PrettyTable = ">=0.7.2" pyparsing = ">=2.1.0" +PyYAML = ">=3.12" stevedore = ">=2.0.1" [[package]] -category = "main" -description = "Lightweight Covariance Matrix Adaptation Evolution Strategy (CMA-ES) implementation for Python 3." name = "cmaes" +version = "0.8.2" +description = "Lightweight Covariance Matrix Adaptation Evolution Strategy (CMA-ES) implementation for Python 3." +category = "main" optional = false python-versions = ">=3.6" -version = "0.8.2" [package.dependencies] numpy = "*" [[package]] -category = "main" -description = "cmd2 - quickly build feature-rich and user-friendly interactive command line applications in Python" name = "cmd2" +version = "2.2.0" +description = "cmd2 - quickly build feature-rich and user-friendly interactive command line applications in Python" +category = "main" optional = false python-versions = ">=3.6" -version = "2.1.2" [package.dependencies] attrs = ">=16.3.0" colorama = ">=0.3.7" +importlib-metadata = {version = ">=1.6.0", markers = "python_version < \"3.8\""} pyperclip = ">=1.6" +pyreadline = {version = "*", markers = "sys_platform == \"win32\" and python_version < \"3.8\""} +pyreadline3 = {version = "*", markers = "sys_platform == \"win32\" and python_version >= \"3.8\""} +typing-extensions = {version = "*", markers = "python_version < \"3.8\""} wcwidth = ">=0.1.7" -[package.dependencies.importlib-metadata] -python = "<3.8" -version = ">=1.6.0" - -[package.dependencies.pyreadline] -python = "<3.8" -version = "*" - -[package.dependencies.pyreadline3] -python = ">=3.8" -version = "*" - -[package.dependencies.typing-extensions] -python = "<3.8" -version = "*" - [package.extras] -dev = ["codecov", "doc8", "flake8", "invoke", "mypy (0.902)", "nox", "pytest (>=4.6)", "pytest-cov", "pytest-mock", "sphinx", "sphinx-rtd-theme", "sphinx-autobuild", "twine (>=1.11)"] +dev = ["codecov", "doc8", "flake8", "invoke", "mypy (==0.902)", "nox", "pytest (>=4.6)", "pytest-cov", "pytest-mock", "sphinx", "sphinx-rtd-theme", "sphinx-autobuild", "twine (>=1.11)"] test = ["codecov", "coverage", "pytest (>=4.6)", "pytest-cov", "pytest-mock", "gnureadline"] -validate = ["flake8", "mypy (0.902)"] +validate = ["flake8", "mypy (==0.902)", "types-pkg-resources"] [[package]] -category = "main" -description = "Cross-platform colored terminal text." name = "colorama" +version = "0.4.4" +description = "Cross-platform colored terminal text." +category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" -version = "0.4.4" [[package]] -category = "main" -description = "Add colours to the output of Python's logging module." name = "colorlog" +version = "6.4.1" +description = "Add colours to the output of Python's logging module." +category = "main" optional = false -python-versions = "*" -version = "5.0.1" +python-versions = ">=3.6" [package.dependencies] -colorama = "*" +colorama = {version = "*", markers = "sys_platform == \"win32\""} + +[package.extras] +development = ["black", "flake8", "mypy", "pytest", "types-colorama"] [[package]] -category = "dev" -description = "Python parser for the CommonMark Markdown spec" name = "commonmark" +version = "0.9.1" +description = "Python parser for the CommonMark Markdown spec" +category = "dev" optional = false python-versions = "*" -version = "0.9.1" [package.extras] -test = ["flake8 (3.7.8)", "hypothesis (3.55.3)"] +test = ["flake8 (==3.7.8)", "hypothesis (==3.55.3)"] [[package]] -category = "dev" -description = "Code coverage measurement for Python" name = "coverage" +version = "5.5" +description = "Code coverage measurement for Python" +category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, <4" -version = "5.5" [package.extras] toml = ["toml"] [[package]] -category = "main" -description = "Composable style cycles" name = "cycler" +version = "0.10.0" +description = "Composable style cycles" +category = "main" optional = false python-versions = "*" -version = "0.10.0" [package.dependencies] six = "*" [[package]] -category = "dev" -description = "An implementation of the Debug Adapter Protocol for Python" name = "debugpy" +version = "1.4.3" +description = "An implementation of the Debug Adapter Protocol for Python" +category = "dev" optional = false python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*" -version = "1.4.1" [[package]] -category = "dev" -description = "Decorators for Humans" name = "decorator" +version = "5.1.0" +description = "Decorators for Humans" +category = "dev" optional = false python-versions = ">=3.5" -version = "5.0.9" [[package]] -category = "dev" -description = "XML bomb protection for Python stdlib modules" name = "defusedxml" +version = "0.7.1" +description = "XML bomb protection for Python stdlib modules" +category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" -version = "0.7.1" [[package]] -category = "dev" -description = "Docutils -- Python Documentation Utilities" name = "docutils" +version = "0.16" +description = "Docutils -- Python Documentation Utilities" +category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" -version = "0.16" [[package]] -category = "dev" -description = "Discover and load entry points from installed packages." name = "entrypoints" +version = "0.3" +description = "Discover and load entry points from installed packages." +category = "dev" optional = false python-versions = ">=2.7" -version = "0.3" [[package]] -category = "dev" -description = "execnet: rapid multi-Python deployment" name = "execnet" +version = "1.9.0" +description = "execnet: rapid multi-Python deployment" +category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" -version = "1.9.0" [package.extras] testing = ["pre-commit"] [[package]] -category = "dev" -description = "the modular source code checker: pep8 pyflakes and co" name = "flake8" +version = "3.9.2" +description = "the modular source code checker: pep8 pyflakes and co" +category = "dev" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7" -version = "3.9.2" [package.dependencies] +importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} mccabe = ">=0.6.0,<0.7.0" pycodestyle = ">=2.7.0,<2.8.0" pyflakes = ">=2.3.0,<2.4.0" -[package.dependencies.importlib-metadata] -python = "<3.8" -version = "*" - [[package]] name = "fsspec" version = "2021.8.1" @@ -463,18 +448,15 @@ description = "File-system specification" category = "main" description = "File-system specification" name = "fsspec" +version = "2021.8.1" +description = "File-system specification" +category = "main" optional = false python-versions = ">=3.6" -version = "2021.7.0" [package.dependencies] -[package.dependencies.aiohttp] -optional = true -version = "*" - -[package.dependencies.requests] -optional = true -version = "*" +aiohttp = {version = "*", optional = true, markers = "extra == \"http\""} +requests = {version = "*", optional = true, markers = "extra == \"http\""} [package.extras] abfs = ["adlfs"] @@ -494,43 +476,39 @@ smb = ["smbprotocol"] ssh = ["paramiko"] [[package]] -category = "main" -description = "Clean single-source support for Python 3 and 2" name = "future" +version = "0.18.2" +description = "Clean single-source support for Python 3 and 2" +category = "main" optional = false python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*" -version = "0.18.2" [[package]] -category = "main" -description = "Google Authentication Library" name = "google-auth" +version = "1.35.0" +description = "Google Authentication Library" +category = "main" optional = false python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*" -version = "1.34.0" [package.dependencies] cachetools = ">=2.0.0,<5.0" pyasn1-modules = ">=0.2.1" -setuptools = ">=40.3.0" +rsa = {version = ">=3.1.4,<5", markers = "python_version >= \"3.6\""} six = ">=1.9.0" -[package.dependencies.rsa] -python = ">=3.6" -version = ">=3.1.4,<5" - [package.extras] aiohttp = ["requests (>=2.20.0,<3.0.0dev)", "aiohttp (>=3.6.2,<4.0.0dev)"] pyopenssl = ["pyopenssl (>=20.0.0)"] reauth = ["pyu2f (>=0.1.5)"] [[package]] -category = "main" -description = "Google Authentication Library" name = "google-auth-oauthlib" +version = "0.4.6" +description = "Google Authentication Library" +category = "main" optional = false python-versions = ">=3.6" -version = "0.4.5" [package.dependencies] google-auth = ">=1.0.0" @@ -540,127 +518,136 @@ requests-oauthlib = ">=0.7.0" tool = ["click (>=6.0.0)"] [[package]] -category = "main" -description = "Lightweight in-process concurrent programming" -marker = "python_version >= \"3\"" name = "greenlet" +version = "1.1.1" +description = "Lightweight in-process concurrent programming" +category = "main" optional = false python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*" -version = "1.1.0" [package.extras] docs = ["sphinx"] [[package]] -category = "main" -description = "HTTP/2-based RPC framework" name = "grpcio" +version = "1.40.0" +description = "HTTP/2-based RPC framework" +category = "main" optional = false python-versions = "*" -version = "1.39.0" [package.dependencies] six = ">=1.5.2" [package.extras] -protobuf = ["grpcio-tools (>=1.39.0)"] +protobuf = ["grpcio-tools (>=1.40.0)"] [[package]] -category = "main" -description = "Internationalized Domain Names in Applications (IDNA)" name = "idna" +version = "3.2" +description = "Internationalized Domain Names in Applications (IDNA)" +category = "main" optional = false python-versions = ">=3.5" -version = "3.2" [[package]] -category = "dev" -description = "Getting image size from png/jpeg/jpeg2000/gif file" name = "imagesize" +version = "1.2.0" +description = "Getting image size from png/jpeg/jpeg2000/gif file" +category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "1.2.0" [[package]] -category = "main" -description = "Read metadata from Python packages" -marker = "python_version < \"3.8\"" name = "importlib-metadata" +version = "4.8.1" +description = "Read metadata from Python packages" +category = "main" optional = false python-versions = ">=3.6" -version = "3.10.1" [package.dependencies] +typing-extensions = {version = ">=3.6.4", markers = "python_version < \"3.8\""} zipp = ">=0.5" -[package.dependencies.typing-extensions] -python = "<3.8" -version = ">=3.6.4" - [package.extras] docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"] -testing = ["pytest (>=4.6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "packaging", "pep517", "pyfakefs", "flufl.flake8", "pytest-black (>=0.3.7)", "pytest-mypy", "importlib-resources (>=1.3)"] +perf = ["ipython"] +testing = ["pytest (>=4.6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "packaging", "pep517", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy", "importlib-resources (>=1.3)"] [[package]] +name = "importlib-resources" +version = "5.2.2" +description = "Read resources from Python packages" category = "main" -description = "iniconfig: brain-dead simple config-ini parsing" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +zipp = {version = ">=3.1.0", markers = "python_version < \"3.10\""} + +[package.extras] +docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"] +testing = ["pytest (>=4.6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "pytest-black (>=0.3.7)", "pytest-mypy"] + +[[package]] name = "iniconfig" +version = "1.1.1" +description = "iniconfig: brain-dead simple config-ini parsing" +category = "main" optional = false python-versions = "*" -version = "1.1.1" [[package]] -category = "dev" -description = "Pythonic task execution" name = "invoke" +version = "1.6.0" +description = "Pythonic task execution" +category = "dev" optional = false python-versions = "*" -version = "1.6.0" [[package]] -category = "dev" -description = "IPython Kernel for Jupyter" name = "ipykernel" +version = "6.4.1" +description = "IPython Kernel for Jupyter" +category = "dev" optional = false python-versions = ">=3.7" -version = "6.0.3" [package.dependencies] -appnope = "*" +appnope = {version = "*", markers = "platform_system == \"Darwin\""} +argcomplete = {version = ">=1.12.3", markers = "python_version < \"3.8.0\""} debugpy = ">=1.0.0,<2.0" +importlib-metadata = {version = "<5", markers = "python_version < \"3.8.0\""} ipython = ">=7.23.1,<8.0" -jupyter-client = "<7.0" +ipython-genutils = "*" +jupyter-client = "<8.0" matplotlib-inline = ">=0.1.0,<0.2.0" tornado = ">=4.2,<7.0" traitlets = ">=4.1.0,<6.0" -[package.dependencies.importlib-metadata] -python = "<3.8.0" -version = "<4" - [package.extras] test = ["pytest (!=5.3.4)", "pytest-cov", "flaky", "nose", "ipyparallel"] [[package]] -category = "dev" -description = "IPython: Productive Interactive Computing" name = "ipython" +version = "7.27.0" +description = "IPython: Productive Interactive Computing" +category = "dev" optional = false python-versions = ">=3.7" -version = "7.26.0" [package.dependencies] -appnope = "*" +appnope = {version = "*", markers = "sys_platform == \"darwin\""} backcall = "*" -colorama = "*" +colorama = {version = "*", markers = "sys_platform == \"win32\""} decorator = "*" jedi = ">=0.16" matplotlib-inline = "*" -pexpect = ">4.3" +pexpect = {version = ">4.3", markers = "sys_platform != \"win32\""} pickleshare = "*" prompt-toolkit = ">=2.0.0,<3.0.0 || >3.0.0,<3.0.1 || >3.0.1,<3.1.0" pygments = "*" -setuptools = ">=18.5" traitlets = ">=4.2" [package.extras] @@ -675,49 +662,49 @@ qtconsole = ["qtconsole"] test = ["nose (>=0.10.1)", "requests", "testpath", "pygments", "nbformat", "ipykernel", "numpy (>=1.17)"] [[package]] -category = "dev" -description = "Vestigial utilities from IPython" name = "ipython-genutils" +version = "0.2.0" +description = "Vestigial utilities from IPython" +category = "dev" optional = false python-versions = "*" -version = "0.2.0" [[package]] -category = "dev" -description = "A Python utility / library to sort Python imports." name = "isort" +version = "5.9.3" +description = "A Python utility / library to sort Python imports." +category = "dev" optional = false python-versions = ">=3.6.1,<4.0" -version = "5.9.3" [package.extras] -colors = ["colorama (>=0.4.3,<0.5.0)"] pipfile_deprecated_finder = ["pipreqs", "requirementslib"] -plugins = ["setuptools"] requirements_deprecated_finder = ["pipreqs", "pip-api"] +colors = ["colorama (>=0.4.3,<0.5.0)"] +plugins = ["setuptools"] [[package]] -category = "dev" -description = "An autocompletion tool for Python that can be used for text editors." name = "jedi" +version = "0.18.0" +description = "An autocompletion tool for Python that can be used for text editors." +category = "dev" optional = false python-versions = ">=3.6" -version = "0.18.0" [package.dependencies] parso = ">=0.8.0,<0.9.0" [package.extras] -qa = ["flake8 (3.8.3)", "mypy (0.782)"] +qa = ["flake8 (==3.8.3)", "mypy (==0.782)"] testing = ["Django (<3.1)", "colorama", "docopt", "pytest (<6.0.0)"] [[package]] -category = "dev" -description = "A very fast and expressive template engine." name = "jinja2" +version = "3.0.1" +description = "A very fast and expressive template engine." +category = "dev" optional = false python-versions = ">=3.6" -version = "3.0.1" [package.dependencies] MarkupSafe = ">=2.0" @@ -726,44 +713,41 @@ MarkupSafe = ">=2.0" i18n = ["Babel (>=2.7)"] [[package]] -category = "main" -description = "Lightweight pipelining with Python functions" name = "joblib" +version = "1.0.1" +description = "Lightweight pipelining with Python functions" +category = "main" optional = false python-versions = ">=3.6" -version = "1.0.1" [[package]] -category = "dev" -description = "An implementation of JSON Schema validation for Python" name = "jsonschema" +version = "3.2.0" +description = "An implementation of JSON Schema validation for Python" +category = "dev" optional = false python-versions = "*" -version = "3.2.0" [package.dependencies] attrs = ">=17.4.0" +importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} pyrsistent = ">=0.14.0" -setuptools = "*" six = ">=1.11.0" -[package.dependencies.importlib-metadata] -python = "<3.8" -version = "*" - [package.extras] format = ["idna", "jsonpointer (>1.13)", "rfc3987", "strict-rfc3339", "webcolors"] format_nongpl = ["idna", "jsonpointer (>1.13)", "webcolors", "rfc3986-validator (>0.1.0)", "rfc3339-validator"] [[package]] -category = "dev" -description = "Jupyter protocol implementation and client libraries" name = "jupyter-client" +version = "7.0.3" +description = "Jupyter protocol implementation and client libraries" +category = "dev" optional = false python-versions = ">=3.6.1" -version = "6.2.0" [package.dependencies] +entrypoints = "*" jupyter-core = ">=4.6.0" nest-asyncio = ">=1.5" python-dateutil = ">=2.1" @@ -772,55 +756,55 @@ tornado = ">=4.1" traitlets = "*" [package.extras] -doc = ["sphinx (>=1.3.6)", "sphinx-rtd-theme", "sphinxcontrib-github-alt"] -test = ["async-generator", "ipykernel", "ipython", "mock", "pytest-asyncio", "pytest-timeout", "pytest", "mypy", "pre-commit", "jedi (<0.18)"] +doc = ["myst-parser", "sphinx (>=1.3.6)", "sphinx-rtd-theme", "sphinxcontrib-github-alt"] +test = ["codecov", "coverage", "ipykernel", "ipython", "mock", "mypy", "pre-commit", "pytest", "pytest-asyncio", "pytest-cov", "pytest-timeout", "jedi (<0.18)"] [[package]] -category = "dev" -description = "Jupyter core package. A base package on which Jupyter projects rely." name = "jupyter-core" +version = "4.8.1" +description = "Jupyter core package. A base package on which Jupyter projects rely." +category = "dev" optional = false python-versions = ">=3.6" -version = "4.7.1" [package.dependencies] -pywin32 = ">=1.0" +pywin32 = {version = ">=1.0", markers = "sys_platform == \"win32\" and platform_python_implementation != \"PyPy\""} traitlets = "*" [[package]] -category = "dev" -description = "Pygments theme using JupyterLab CSS variables" name = "jupyterlab-pygments" +version = "0.1.2" +description = "Pygments theme using JupyterLab CSS variables" +category = "dev" optional = false python-versions = "*" -version = "0.1.2" [package.dependencies] pygments = ">=2.4.1,<3" [[package]] -category = "main" -description = "A fast implementation of the Cassowary constraint solver" name = "kiwisolver" +version = "1.3.2" +description = "A fast implementation of the Cassowary constraint solver" +category = "main" optional = false -python-versions = ">=3.6" -version = "1.3.1" +python-versions = ">=3.7" [[package]] -category = "dev" -description = "A fast and thorough lazy object proxy." name = "lazy-object-proxy" +version = "1.6.0" +description = "A fast and thorough lazy object proxy." +category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*" -version = "1.6.0" [[package]] -category = "main" -description = "A super-fast templating language that borrows the best ideas from the existing templating languages." name = "mako" +version = "1.1.5" +description = "A super-fast templating language that borrows the best ideas from the existing templating languages." +category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "1.1.4" [package.dependencies] MarkupSafe = ">=0.9.2" @@ -830,36 +814,34 @@ babel = ["babel"] lingua = ["lingua"] [[package]] -category = "main" -description = "Python implementation of Markdown." name = "markdown" +version = "3.3.4" +description = "Python implementation of Markdown." +category = "main" optional = false python-versions = ">=3.6" -version = "3.3.4" [package.dependencies] -[package.dependencies.importlib-metadata] -python = "<3.8" -version = "*" +importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} [package.extras] testing = ["coverage", "pyyaml"] [[package]] -category = "main" -description = "Safely add untrusted strings to HTML/XML markup." name = "markupsafe" +version = "2.0.1" +description = "Safely add untrusted strings to HTML/XML markup." +category = "main" optional = false python-versions = ">=3.6" -version = "2.0.1" [[package]] -category = "main" -description = "Python plotting package" name = "matplotlib" +version = "3.4.3" +description = "Python plotting package" +category = "main" optional = false python-versions = ">=3.7" -version = "3.4.2" [package.dependencies] cycler = ">=0.10" @@ -870,79 +852,75 @@ pyparsing = ">=2.2.1" python-dateutil = ">=2.7" [[package]] -category = "dev" -description = "Inline Matplotlib backend for Jupyter" name = "matplotlib-inline" +version = "0.1.3" +description = "Inline Matplotlib backend for Jupyter" +category = "dev" optional = false python-versions = ">=3.5" -version = "0.1.2" [package.dependencies] traitlets = "*" [[package]] -category = "dev" -description = "McCabe checker, plugin for flake8" name = "mccabe" +version = "0.6.1" +description = "McCabe checker, plugin for flake8" +category = "dev" optional = false python-versions = "*" -version = "0.6.1" [[package]] -category = "dev" -description = "The fastest markdown parser in pure Python" name = "mistune" +version = "0.8.4" +description = "The fastest markdown parser in pure Python" +category = "dev" optional = false python-versions = "*" -version = "0.8.4" [[package]] -category = "main" -description = "multidict implementation" name = "multidict" +version = "5.1.0" +description = "multidict implementation" +category = "main" optional = false python-versions = ">=3.6" -version = "5.1.0" [[package]] -category = "dev" -description = "Optional static typing for Python" name = "mypy" +version = "0.910" +description = "Optional static typing for Python" +category = "dev" optional = false python-versions = ">=3.5" -version = "0.910" [package.dependencies] mypy-extensions = ">=0.4.3,<0.5.0" toml = "*" +typed-ast = {version = ">=1.4.0,<1.5.0", markers = "python_version < \"3.8\""} typing-extensions = ">=3.7.4" -[package.dependencies.typed-ast] -python = "<3.8" -version = ">=1.4.0,<1.5.0" - [package.extras] dmypy = ["psutil (>=4.0)"] python2 = ["typed-ast (>=1.4.0,<1.5.0)"] [[package]] -category = "dev" -description = "Experimental type system extensions for programs checked with the mypy typechecker." name = "mypy-extensions" +version = "0.4.3" +description = "Experimental type system extensions for programs checked with the mypy typechecker." +category = "dev" optional = false python-versions = "*" -version = "0.4.3" [[package]] -category = "dev" -description = "A client library for executing notebooks. Formerly nbconvert's ExecutePreprocessor." name = "nbclient" +version = "0.5.4" +description = "A client library for executing notebooks. Formerly nbconvert's ExecutePreprocessor." +category = "dev" optional = false python-versions = ">=3.6.1" -version = "0.5.3" [package.dependencies] -async-generator = "*" jupyter-client = ">=6.1.5" nbformat = ">=5.0" nest-asyncio = "*" @@ -954,12 +932,12 @@ sphinx = ["Sphinx (>=1.7)", "sphinx-book-theme", "mock", "moto", "myst-parser"] test = ["codecov", "coverage", "ipython", "ipykernel", "ipywidgets", "pytest (>=4.1)", "pytest-cov (>=2.6.1)", "check-manifest", "flake8", "mypy", "tox", "bumpversion", "xmltodict", "pip (>=18.1)", "wheel (>=0.31.0)", "setuptools (>=38.6.0)", "twine (>=1.11.0)", "black"] [[package]] -category = "dev" -description = "Converting Jupyter Notebooks" name = "nbconvert" +version = "6.1.0" +description = "Converting Jupyter Notebooks" +category = "dev" optional = false python-versions = ">=3.7" -version = "6.1.0" [package.dependencies] bleach = "*" @@ -977,19 +955,19 @@ testpath = "*" traitlets = ">=5.0" [package.extras] -all = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pyppeteer (0.2.2)", "tornado (>=4.0)", "sphinx (>=1.5.1)", "sphinx-rtd-theme", "nbsphinx (>=0.2.12)", "ipython"] +all = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pyppeteer (==0.2.2)", "tornado (>=4.0)", "sphinx (>=1.5.1)", "sphinx-rtd-theme", "nbsphinx (>=0.2.12)", "ipython"] docs = ["sphinx (>=1.5.1)", "sphinx-rtd-theme", "nbsphinx (>=0.2.12)", "ipython"] serve = ["tornado (>=4.0)"] -test = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pyppeteer (0.2.2)"] -webpdf = ["pyppeteer (0.2.2)"] +test = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pyppeteer (==0.2.2)"] +webpdf = ["pyppeteer (==0.2.2)"] [[package]] -category = "dev" -description = "The Jupyter Notebook format" name = "nbformat" +version = "5.1.3" +description = "The Jupyter Notebook format" +category = "dev" optional = false python-versions = ">=3.5" -version = "5.1.3" [package.dependencies] ipython-genutils = "*" @@ -1008,9 +986,11 @@ description = "Jupyter Notebook Tools for Sphinx" category = "dev" description = "Jupyter Notebook Tools for Sphinx" name = "nbsphinx" +version = "0.8.7" +description = "Jupyter Notebook Tools for Sphinx" +category = "dev" optional = false python-versions = ">=3.6" -version = "0.8.6" [package.dependencies] docutils = "*" @@ -1021,28 +1001,28 @@ sphinx = ">=1.8" traitlets = "*" [[package]] -category = "dev" -description = "Patch asyncio to allow nested event loops" name = "nest-asyncio" +version = "1.5.1" +description = "Patch asyncio to allow nested event loops" +category = "dev" optional = false python-versions = ">=3.5" -version = "1.5.1" [[package]] -category = "main" -description = "NumPy is the fundamental package for array computing with Python." name = "numpy" +version = "1.21.1" +description = "NumPy is the fundamental package for array computing with Python." +category = "main" optional = false python-versions = ">=3.7" -version = "1.21.1" [[package]] -category = "main" -description = "A generic, spec-compliant, thorough implementation of the OAuth request-signing logic" name = "oauthlib" +version = "3.1.1" +description = "A generic, spec-compliant, thorough implementation of the OAuth request-signing logic" +category = "main" optional = false python-versions = ">=3.6" -version = "3.1.1" [package.extras] rsa = ["cryptography (>=3.0.0,<4)"] @@ -1050,55 +1030,55 @@ signals = ["blinker (>=1.4.0)"] signedtoken = ["cryptography (>=3.0.0,<4)", "pyjwt (>=2.0.0,<3)"] [[package]] -category = "main" -description = "A hyperparameter optimization framework" name = "optuna" +version = "2.9.1" +description = "A hyperparameter optimization framework" +category = "main" optional = false python-versions = ">=3.6" -version = "2.9.1" [package.dependencies] -PyYAML = "*" alembic = "*" cliff = "*" cmaes = ">=0.8.2" colorlog = "*" numpy = "*" packaging = ">=20.0" +PyYAML = "*" scipy = "!=1.4.0" sqlalchemy = ">=1.1.0" tqdm = "*" [package.extras] benchmark = ["asv", "virtualenv"] -checking = ["black", "hacking", "isort", "mypy (0.790)", "blackdoc"] +checking = ["black", "hacking", "isort", "mypy (==0.790)", "blackdoc"] codecov = ["codecov", "pytest-cov"] doctest = ["cma", "matplotlib (>=3.0.0)", "pandas", "plotly (>=4.0.0)", "scikit-learn (>=0.24.2)", "scikit-optimize", "mlflow"] -document = ["sphinx (<4.0.0)", "sphinx-rtd-theme", "sphinx-copybutton", "sphinx-gallery", "sphinx-plotly-directive", "pillow", "matplotlib", "scikit-learn", "plotly (>=4.0.0)", "pandas", "lightgbm", "torch (1.8.0)", "torchvision (0.9.0)", "torchaudio (0.8.0)", "thop"] +document = ["sphinx (<4.0.0)", "sphinx-rtd-theme", "sphinx-copybutton", "sphinx-gallery", "sphinx-plotly-directive", "pillow", "matplotlib", "scikit-learn", "plotly (>=4.0.0)", "pandas", "lightgbm", "torch (==1.8.0)", "torchvision (==0.9.0)", "torchaudio (==0.8.0)", "thop"] experimental = ["redis"] -integration = ["chainer (>=5.0.0)", "cma", "lightgbm", "mlflow", "wandb", "mpi4py", "mxnet", "pandas", "scikit-learn (>=0.24.2)", "scikit-optimize", "xgboost", "pytorch-ignite", "pytorch-lightning (>=1.0.2)", "skorch", "catalyst (>=21.3)", "torchaudio (0.8.0)", "allennlp (>=2.2.0)", "fastai", "keras", "tensorflow (<2.5.0)", "tensorflow-datasets", "botorch (>=0.4.0)", "torch (1.8.0+cpu)", "torchvision (0.9.0+cpu)", "torch (1.8.0)", "torchvision (0.9.0)"] +integration = ["chainer (>=5.0.0)", "cma", "lightgbm", "mlflow", "wandb", "mpi4py", "mxnet", "pandas", "scikit-learn (>=0.24.2)", "scikit-optimize", "xgboost", "pytorch-ignite", "pytorch-lightning (>=1.0.2)", "skorch", "catalyst (>=21.3)", "torchaudio (==0.8.0)", "allennlp (>=2.2.0)", "fastai", "keras", "tensorflow (<2.5.0)", "tensorflow-datasets", "botorch (>=0.4.0)", "torch (==1.8.0+cpu)", "torchvision (==0.9.0+cpu)", "torch (==1.8.0)", "torchvision (==0.9.0)"] optional = ["bokeh (<2.0.0)", "matplotlib (>=3.0.0)", "pandas", "plotly (>=4.0.0)", "redis", "scikit-learn (>=0.24.2)"] -testing = ["bokeh (<2.0.0)", "chainer (>=5.0.0)", "cma", "fakeredis", "lightgbm", "matplotlib (>=3.0.0)", "mlflow", "mpi4py", "mxnet", "pandas", "plotly (>=4.0.0)", "pytest", "scikit-learn (>=0.24.2)", "scikit-optimize", "xgboost", "keras", "tensorflow-datasets", "pytorch-ignite", "pytorch-lightning (>=1.0.2)", "skorch", "catalyst (>=21.3)", "torchaudio (0.8.0)", "allennlp (>=2.2.0)", "fastai", "tensorflow (<2.5.0)", "botorch (>=0.4.0)", "torch (1.8.0+cpu)", "torchvision (0.9.0+cpu)", "torch (1.8.0)", "torchvision (0.9.0)"] +testing = ["bokeh (<2.0.0)", "chainer (>=5.0.0)", "cma", "fakeredis", "lightgbm", "matplotlib (>=3.0.0)", "mlflow", "mpi4py", "mxnet", "pandas", "plotly (>=4.0.0)", "pytest", "scikit-learn (>=0.24.2)", "scikit-optimize", "xgboost", "keras", "tensorflow-datasets", "pytorch-ignite", "pytorch-lightning (>=1.0.2)", "skorch", "catalyst (>=21.3)", "torchaudio (==0.8.0)", "allennlp (>=2.2.0)", "fastai", "tensorflow (<2.5.0)", "botorch (>=0.4.0)", "torch (==1.8.0+cpu)", "torchvision (==0.9.0+cpu)", "torch (==1.8.0)", "torchvision (==0.9.0)"] tests = ["fakeredis", "pytest"] [[package]] -category = "main" -description = "Core utilities for Python packages" name = "packaging" +version = "21.0" +description = "Core utilities for Python packages" +category = "main" optional = false python-versions = ">=3.6" -version = "21.0" [package.dependencies] pyparsing = ">=2.0.2" [[package]] -category = "main" -description = "Powerful data structures for data analysis, time series, and statistics" name = "pandas" +version = "1.3.3" +description = "Powerful data structures for data analysis, time series, and statistics" +category = "main" optional = false python-versions = ">=3.7.1" -version = "1.3.1" [package.dependencies] numpy = ">=1.17.3" @@ -1109,35 +1089,35 @@ pytz = ">=2017.3" test = ["hypothesis (>=3.58)", "pytest (>=6.0)", "pytest-xdist"] [[package]] -category = "dev" +name = "pandoc" +version = "1.1.0" description = "Pandoc Documents for Python" -name = "pandoc" +category = "dev" optional = false python-versions = "*" -version = "1.1.0" [package.dependencies] plumbum = "*" ply = "*" [[package]] -category = "dev" -description = "Utilities for writing pandoc filters in python" name = "pandocfilters" +version = "1.5.0" +description = "Utilities for writing pandoc filters in python" +category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "1.4.3" [[package]] -category = "dev" -description = "A Python Parser" name = "parso" +version = "0.8.2" +description = "A Python Parser" +category = "dev" optional = false python-versions = ">=3.6" -version = "0.8.2" [package.extras] -qa = ["flake8 (3.8.3)", "mypy (0.782)"] +qa = ["flake8 (==3.8.3)", "mypy (==0.782)"] testing = ["docopt", "pytest (<6.0.0)"] [[package]] @@ -1151,52 +1131,51 @@ optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7" [[package]] -category = "main" -description = "A Python package for describing statistical models and for building design matrices." name = "patsy" +version = "0.5.1" +description = "A Python package for describing statistical models and for building design matrices." +category = "main" optional = false python-versions = "*" -version = "0.5.1" [package.dependencies] numpy = ">=1.4" six = "*" [[package]] -category = "main" -description = "Python Build Reasonableness" name = "pbr" +version = "5.6.0" +description = "Python Build Reasonableness" +category = "main" optional = false python-versions = ">=2.6" -version = "5.6.0" [[package]] -category = "dev" -description = "Pexpect allows easy control of interactive console applications." -marker = "sys_platform != \"win32\"" name = "pexpect" +version = "4.8.0" +description = "Pexpect allows easy control of interactive console applications." +category = "dev" optional = false python-versions = "*" -version = "4.8.0" [package.dependencies] ptyprocess = ">=0.5" [[package]] -category = "dev" -description = "Tiny 'shelve'-like database with concurrency support" name = "pickleshare" +version = "0.7.5" +description = "Tiny 'shelve'-like database with concurrency support" +category = "dev" optional = false python-versions = "*" -version = "0.7.5" [[package]] -category = "main" -description = "Python Imaging Library (Fork)" name = "pillow" +version = "8.3.2" +description = "Python Imaging Library (Fork)" +category = "main" optional = false python-versions = ">=3.6" -version = "8.3.1" [[package]] name = "platformdirs" @@ -1217,28 +1196,29 @@ description = "plugin and hook calling mechanisms for python" category = "main" description = "plugin and hook calling mechanisms for python" name = "pluggy" +version = "1.0.0" +description = "plugin and hook calling mechanisms for python" +category = "main" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "0.13.1" +python-versions = ">=3.6" [package.dependencies] -[package.dependencies.importlib-metadata] -python = "<3.8" -version = ">=0.12" +importlib-metadata = {version = ">=0.12", markers = "python_version < \"3.8\""} [package.extras] dev = ["pre-commit", "tox"] +testing = ["pytest", "pytest-benchmark"] [[package]] -category = "dev" -description = "Plumbum: shell combinators library" name = "plumbum" +version = "1.7.0" +description = "Plumbum: shell combinators library" +category = "dev" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4,>=2.7" -version = "1.7.0" [package.dependencies] -pypiwin32 = "*" +pypiwin32 = {version = "*", markers = "platform_system == \"Windows\" and platform_python_implementation != \"PyPy\""} [package.extras] dev = ["pytest", "pytest-cov", "pytest-mock", "pytest-timeout", "paramiko", "psutil"] @@ -1246,124 +1226,116 @@ docs = ["recommonmark (>=0.5.0)", "Sphinx (>=3.0.0)", "sphinx-rtd-theme (>=0.5.0 ssh = ["paramiko"] [[package]] -category = "dev" -description = "Python Lex & Yacc" name = "ply" +version = "3.11" +description = "Python Lex & Yacc" +category = "dev" optional = false python-versions = "*" -version = "3.11" [[package]] -category = "main" -description = "A simple Python library for easily displaying tabular data in a visually appealing ASCII table format" name = "prettytable" +version = "2.2.0" +description = "A simple Python library for easily displaying tabular data in a visually appealing ASCII table format" +category = "main" optional = false python-versions = ">=3.6" -version = "2.1.0" [package.dependencies] +importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} wcwidth = "*" -[package.dependencies.importlib-metadata] -python = "<3.8" -version = "*" - [package.extras] tests = ["pytest", "pytest-cov"] [[package]] -category = "dev" -description = "Library for building powerful interactive command lines in Python" name = "prompt-toolkit" +version = "3.0.20" +description = "Library for building powerful interactive command lines in Python" +category = "dev" optional = false -python-versions = ">=3.6.1" -version = "3.0.19" +python-versions = ">=3.6.2" [package.dependencies] wcwidth = "*" [[package]] -category = "main" -description = "Protocol Buffers" name = "protobuf" +version = "3.18.0" +description = "Protocol Buffers" +category = "main" optional = false python-versions = "*" -version = "3.17.3" - -[package.dependencies] -six = ">=1.9" [[package]] -category = "dev" -description = "Run a subprocess in a pseudo terminal" -marker = "sys_platform != \"win32\"" name = "ptyprocess" +version = "0.7.0" +description = "Run a subprocess in a pseudo terminal" +category = "dev" optional = false python-versions = "*" -version = "0.7.0" [[package]] -category = "main" -description = "library with cross-python path, ini-parsing, io, code, log facilities" name = "py" +version = "1.10.0" +description = "library with cross-python path, ini-parsing, io, code, log facilities" +category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "1.10.0" [[package]] -category = "dev" -description = "Python library for Apache Arrow" name = "pyarrow" +version = "5.0.0" +description = "Python library for Apache Arrow" +category = "dev" optional = false python-versions = ">=3.6" -version = "5.0.0" [package.dependencies] numpy = ">=1.16.6" [[package]] -category = "main" -description = "ASN.1 types and codecs" name = "pyasn1" +version = "0.4.8" +description = "ASN.1 types and codecs" +category = "main" optional = false python-versions = "*" -version = "0.4.8" [[package]] -category = "main" -description = "A collection of ASN.1-based protocols modules." name = "pyasn1-modules" +version = "0.2.8" +description = "A collection of ASN.1-based protocols modules." +category = "main" optional = false python-versions = "*" -version = "0.2.8" [package.dependencies] pyasn1 = ">=0.4.6,<0.5.0" [[package]] -category = "dev" -description = "Python style guide checker" name = "pycodestyle" +version = "2.7.0" +description = "Python style guide checker" +category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "2.7.0" [[package]] -category = "dev" -description = "C parser in Python" -marker = "implementation_name == \"pypy\"" name = "pycparser" +version = "2.20" +description = "C parser in Python" +category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "2.20" [[package]] -category = "dev" -description = "Bootstrap-based Sphinx theme from the PyData community" name = "pydata-sphinx-theme" +version = "0.6.3" +description = "Bootstrap-based Sphinx theme from the PyData community" +category = "dev" optional = false python-versions = ">=3.5" -version = "0.6.3" [package.dependencies] beautifulsoup4 = "*" @@ -1371,32 +1343,32 @@ docutils = "<0.17" sphinx = "*" [package.extras] -coverage = ["pytest-cov", "codecov", "sphinx", "numpydoc", "recommonmark", "pandas", "pytest", "pytest-regressions", "beautifulsoup4", "jupyter-sphinx", "plotly", "numpy", "xarray", "docutils (0.16)"] -test = ["sphinx", "numpydoc", "recommonmark", "pandas", "pytest", "pytest-regressions", "beautifulsoup4", "jupyter-sphinx", "plotly", "numpy", "xarray", "docutils (0.16)"] +coverage = ["pytest-cov", "codecov", "sphinx", "numpydoc", "recommonmark", "pandas", "pytest", "pytest-regressions", "beautifulsoup4", "jupyter-sphinx", "plotly", "numpy", "xarray", "docutils (==0.16)"] +test = ["sphinx", "numpydoc", "recommonmark", "pandas", "pytest", "pytest-regressions", "beautifulsoup4", "jupyter-sphinx", "plotly", "numpy", "xarray", "docutils (==0.16)"] [[package]] -category = "main" -description = "Deprecation tooling" name = "pydeprecate" +version = "0.3.1" +description = "Deprecation tooling" +category = "main" optional = false python-versions = ">=3.6" -version = "0.3.1" [[package]] -category = "dev" -description = "passive checker of Python programs" name = "pyflakes" +version = "2.3.1" +description = "passive checker of Python programs" +category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "2.3.1" [[package]] -category = "dev" -description = "Pygments is a syntax highlighting package written in Python." name = "pygments" +version = "2.10.0" +description = "Pygments is a syntax highlighting package written in Python." +category = "dev" optional = false python-versions = ">=3.5" -version = "2.9.0" [[package]] name = "pylint" @@ -1405,9 +1377,11 @@ description = "python code static checker" category = "dev" description = "python code static checker" name = "pylint" +version = "2.11.1" +description = "python code static checker" +category = "dev" optional = false python-versions = "~=3.6" -version = "2.9.6" [package.dependencies] astroid = ">=2.8.0,<2.9" @@ -1419,58 +1393,55 @@ toml = ">=0.7.1" typing-extensions = {version = ">=3.10.0", markers = "python_version < \"3.10\""} [[package]] -category = "main" -description = "Python parsing module" name = "pyparsing" +version = "2.4.7" +description = "Python parsing module" +category = "main" optional = false python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*" -version = "2.4.7" [[package]] -category = "main" -description = "A cross-platform clipboard module for Python. (Only handles plain text for now.)" name = "pyperclip" +version = "1.8.2" +description = "A cross-platform clipboard module for Python. (Only handles plain text for now.)" +category = "main" optional = false python-versions = "*" -version = "1.8.2" [[package]] -category = "dev" -description = "" -marker = "platform_system == \"Windows\" and platform_python_implementation != \"PyPy\"" name = "pypiwin32" +version = "223" +description = "" +category = "dev" optional = false python-versions = "*" -version = "223" [package.dependencies] pywin32 = ">=223" [[package]] -category = "main" -description = "A python implmementation of GNU readline." -marker = "sys_platform == \"win32\" and python_version < \"3.8\"" name = "pyreadline" +version = "2.1" +description = "A python implmementation of GNU readline." +category = "main" optional = false python-versions = "*" -version = "2.1" [[package]] -category = "main" -description = "A python implementation of GNU readline." -marker = "sys_platform == \"win32\" and python_version >= \"3.8\"" name = "pyreadline3" +version = "3.3" +description = "A python implementation of GNU readline." +category = "main" optional = false python-versions = "*" -version = "3.3" [[package]] -category = "dev" -description = "Persistent/Functional/Immutable data structures" name = "pyrsistent" +version = "0.18.0" +description = "Persistent/Functional/Immutable data structures" +category = "dev" optional = false python-versions = ">=3.6" -version = "0.18.0" [[package]] name = "pytest" @@ -1479,34 +1450,33 @@ description = "pytest: simple powerful testing with Python" category = "main" description = "pytest: simple powerful testing with Python" name = "pytest" +version = "6.2.5" +description = "pytest: simple powerful testing with Python" +category = "main" optional = false python-versions = ">=3.6" -version = "6.2.4" [package.dependencies] -atomicwrites = ">=1.0" +atomicwrites = {version = ">=1.0", markers = "sys_platform == \"win32\""} attrs = ">=19.2.0" -colorama = "*" +colorama = {version = "*", markers = "sys_platform == \"win32\""} +importlib-metadata = {version = ">=0.12", markers = "python_version < \"3.8\""} iniconfig = "*" packaging = "*" pluggy = ">=0.12,<2.0" py = ">=1.8.2" toml = "*" -[package.dependencies.importlib-metadata] -python = "<3.8" -version = ">=0.12" - [package.extras] testing = ["argcomplete", "hypothesis (>=3.56)", "mock", "nose", "requests", "xmlschema"] [[package]] -category = "dev" -description = "Pytest plugin for measuring coverage." name = "pytest-cov" +version = "2.12.1" +description = "Pytest plugin for measuring coverage." +category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" -version = "2.12.1" [package.dependencies] coverage = ">=5.2.1" @@ -1517,35 +1487,35 @@ toml = "*" testing = ["fields", "hunter", "process-tests", "six", "pytest-xdist", "virtualenv"] [[package]] -category = "dev" -description = "run tests in isolated forked subprocesses" name = "pytest-forked" +version = "1.3.0" +description = "run tests in isolated forked subprocesses" +category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" -version = "1.3.0" [package.dependencies] py = "*" pytest = ">=3.10" [[package]] -category = "main" -description = "pytest plugin to annotate failed tests with a workflow command for GitHub Actions" name = "pytest-github-actions-annotate-failures" +version = "0.1.3" +description = "pytest plugin to annotate failed tests with a workflow command for GitHub Actions" +category = "main" optional = true python-versions = "*" -version = "0.1.3" [package.dependencies] pytest = ">=4.0.0" [[package]] -category = "dev" -description = "pytest-sugar is a plugin for pytest that changes the default look and feel of pytest (e.g. progressbar, show tests that fail instantly)." name = "pytest-sugar" +version = "0.9.4" +description = "pytest-sugar is a plugin for pytest that changes the default look and feel of pytest (e.g. progressbar, show tests that fail instantly)." +category = "dev" optional = false python-versions = "*" -version = "0.9.4" [package.dependencies] packaging = ">=14.1" @@ -1553,12 +1523,12 @@ pytest = ">=2.9" termcolor = ">=1.1.0" [[package]] -category = "dev" -description = "pytest xdist plugin for distributed testing and loop-on-failing modes" name = "pytest-xdist" +version = "2.3.0" +description = "pytest xdist plugin for distributed testing and loop-on-failing modes" +category = "dev" optional = false python-versions = ">=3.6" -version = "2.3.0" [package.dependencies] execnet = ">=1.1" @@ -1570,12 +1540,12 @@ psutil = ["psutil (>=3.0)"] testing = ["filelock"] [[package]] -category = "main" -description = "Extensions to the standard Python datetime module" name = "python-dateutil" +version = "2.8.2" +description = "Extensions to the standard Python datetime module" +category = "main" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7" -version = "2.8.2" [package.dependencies] six = ">=1.5" @@ -1595,12 +1565,14 @@ description = "PyTorch Lightning is the lightweight PyTorch wrapper for ML resea category = "main" description = "PyTorch Lightning is the lightweight PyTorch wrapper for ML researchers. Scale your models. Write less boilerplate." name = "pytorch-lightning" +version = "1.4.7" +description = "PyTorch Lightning is the lightweight PyTorch wrapper for ML researchers. Scale your models. Write less boilerplate." +category = "main" optional = false python-versions = ">=3.6" -version = "1.4.1" [package.dependencies] -PyYAML = ">=5.1" +fsspec = {version = ">=2021.05.0,<2021.06.0 || >2021.06.0", extras = ["http"]} future = ">=0.17.1" numpy = ">=1.17.2" packaging = ">=17.0" @@ -1612,64 +1584,59 @@ torchmetrics = ">=0.4.0" tqdm = ">=4.41.0" typing-extensions = "*" -[package.dependencies.fsspec] -extras = ["http"] -version = ">=2021.05.0,<2021.06.0 || >2021.06.0" - [package.extras] -all = ["matplotlib (>3.1)", "horovod (>=0.21.2)", "omegaconf (>=2.0.1)", "torchtext (>=0.7)", "onnx (>=1.7.0)", "onnxruntime (>=1.3.0)", "hydra-core (>=1.0)", "jsonargparse (>=3.17.0)", "gcsfs (>=2021.5.0)", "neptune-client (>=0.4.109)", "comet-ml (>=3.1.12)", "mlflow (>=1.0.0)", "test-tube (>=0.7.5)", "wandb (>=0.8.21)", "coverage (>5.2.0)", "codecov (>=2.1)", "pytest (>=6.0)", "check-manifest", "twine (3.2)", "mypy (>=0.900)", "pre-commit (>=1.0)", "cloudpickle (>=1.3)", "scikit-learn (>0.22.1)", "scikit-image (>0.17.1)", "nltk (>=3.3)", "pandas", "torchvision (>=0.7)", "gym (>=0.17.0)", "ipython"] -cpu = ["matplotlib (>3.1)", "omegaconf (>=2.0.1)", "torchtext (>=0.7)", "onnx (>=1.7.0)", "onnxruntime (>=1.3.0)", "hydra-core (>=1.0)", "jsonargparse (>=3.17.0)", "gcsfs (>=2021.5.0)", "neptune-client (>=0.4.109)", "comet-ml (>=3.1.12)", "mlflow (>=1.0.0)", "test-tube (>=0.7.5)", "wandb (>=0.8.21)", "coverage (>5.2.0)", "codecov (>=2.1)", "pytest (>=6.0)", "check-manifest", "twine (3.2)", "mypy (>=0.900)", "pre-commit (>=1.0)", "cloudpickle (>=1.3)", "scikit-learn (>0.22.1)", "scikit-image (>0.17.1)", "nltk (>=3.3)", "pandas", "torchvision (>=0.7)", "gym (>=0.17.0)", "ipython"] -cpu-extra = ["matplotlib (>3.1)", "omegaconf (>=2.0.1)", "torchtext (>=0.7)", "onnx (>=1.7.0)", "onnxruntime (>=1.3.0)", "hydra-core (>=1.0)", "jsonargparse (>=3.17.0)", "gcsfs (>=2021.5.0)"] -dev = ["matplotlib (>3.1)", "horovod (>=0.21.2)", "omegaconf (>=2.0.1)", "torchtext (>=0.7)", "onnx (>=1.7.0)", "onnxruntime (>=1.3.0)", "hydra-core (>=1.0)", "jsonargparse (>=3.17.0)", "gcsfs (>=2021.5.0)", "neptune-client (>=0.4.109)", "comet-ml (>=3.1.12)", "mlflow (>=1.0.0)", "test-tube (>=0.7.5)", "wandb (>=0.8.21)", "coverage (>5.2.0)", "codecov (>=2.1)", "pytest (>=6.0)", "check-manifest", "twine (3.2)", "mypy (>=0.900)", "pre-commit (>=1.0)", "cloudpickle (>=1.3)", "scikit-learn (>0.22.1)", "scikit-image (>0.17.1)", "nltk (>=3.3)", "pandas"] +all = ["matplotlib (>3.1)", "horovod (>=0.21.2)", "omegaconf (>=2.0.1)", "torchtext (>=0.7)", "onnx (>=1.7.0)", "onnxruntime (>=1.3.0)", "hydra-core (>=1.0)", "jsonargparse[signatures] (>=3.17.0)", "gcsfs (>=2021.5.0)", "neptune-client (>=0.4.109)", "comet-ml (>=3.1.12)", "mlflow (>=1.0.0)", "test-tube (>=0.7.5)", "wandb (>=0.8.21)", "coverage (>5.2.0)", "codecov (>=2.1)", "pytest (>=6.0)", "check-manifest", "twine (==3.2)", "mypy (>=0.900)", "pre-commit (>=1.0)", "cloudpickle (>=1.3)", "scikit-learn (>0.22.1)", "scikit-image (>0.17.1)", "nltk (>=3.3)", "pandas", "torchvision (>=0.7)", "gym (>=0.17.0)", "ipython"] +cpu = ["matplotlib (>3.1)", "omegaconf (>=2.0.1)", "torchtext (>=0.7)", "onnx (>=1.7.0)", "onnxruntime (>=1.3.0)", "hydra-core (>=1.0)", "jsonargparse[signatures] (>=3.17.0)", "gcsfs (>=2021.5.0)", "neptune-client (>=0.4.109)", "comet-ml (>=3.1.12)", "mlflow (>=1.0.0)", "test-tube (>=0.7.5)", "wandb (>=0.8.21)", "coverage (>5.2.0)", "codecov (>=2.1)", "pytest (>=6.0)", "check-manifest", "twine (==3.2)", "mypy (>=0.900)", "pre-commit (>=1.0)", "cloudpickle (>=1.3)", "scikit-learn (>0.22.1)", "scikit-image (>0.17.1)", "nltk (>=3.3)", "pandas", "torchvision (>=0.7)", "gym (>=0.17.0)", "ipython"] +cpu-extra = ["matplotlib (>3.1)", "omegaconf (>=2.0.1)", "torchtext (>=0.7)", "onnx (>=1.7.0)", "onnxruntime (>=1.3.0)", "hydra-core (>=1.0)", "jsonargparse[signatures] (>=3.17.0)", "gcsfs (>=2021.5.0)"] +dev = ["matplotlib (>3.1)", "horovod (>=0.21.2)", "omegaconf (>=2.0.1)", "torchtext (>=0.7)", "onnx (>=1.7.0)", "onnxruntime (>=1.3.0)", "hydra-core (>=1.0)", "jsonargparse[signatures] (>=3.17.0)", "gcsfs (>=2021.5.0)", "neptune-client (>=0.4.109)", "comet-ml (>=3.1.12)", "mlflow (>=1.0.0)", "test-tube (>=0.7.5)", "wandb (>=0.8.21)", "coverage (>5.2.0)", "codecov (>=2.1)", "pytest (>=6.0)", "check-manifest", "twine (==3.2)", "mypy (>=0.900)", "pre-commit (>=1.0)", "cloudpickle (>=1.3)", "scikit-learn (>0.22.1)", "scikit-image (>0.17.1)", "nltk (>=3.3)", "pandas"] examples = ["torchvision (>=0.7)", "gym (>=0.17.0)", "ipython"] -extra = ["matplotlib (>3.1)", "horovod (>=0.21.2)", "omegaconf (>=2.0.1)", "torchtext (>=0.7)", "onnx (>=1.7.0)", "onnxruntime (>=1.3.0)", "hydra-core (>=1.0)", "jsonargparse (>=3.17.0)", "gcsfs (>=2021.5.0)"] +extra = ["matplotlib (>3.1)", "horovod (>=0.21.2)", "omegaconf (>=2.0.1)", "torchtext (>=0.7)", "onnx (>=1.7.0)", "onnxruntime (>=1.3.0)", "hydra-core (>=1.0)", "jsonargparse[signatures] (>=3.17.0)", "gcsfs (>=2021.5.0)"] loggers = ["neptune-client (>=0.4.109)", "comet-ml (>=3.1.12)", "mlflow (>=1.0.0)", "test-tube (>=0.7.5)", "wandb (>=0.8.21)"] -test = ["coverage (>5.2.0)", "codecov (>=2.1)", "pytest (>=6.0)", "check-manifest", "twine (3.2)", "mypy (>=0.900)", "pre-commit (>=1.0)", "cloudpickle (>=1.3)", "scikit-learn (>0.22.1)", "scikit-image (>0.17.1)", "nltk (>=3.3)", "pandas"] +test = ["coverage (>5.2.0)", "codecov (>=2.1)", "pytest (>=6.0)", "check-manifest", "twine (==3.2)", "mypy (>=0.900)", "pre-commit (>=1.0)", "cloudpickle (>=1.3)", "scikit-learn (>0.22.1)", "scikit-image (>0.17.1)", "nltk (>=3.3)", "pandas"] [[package]] -category = "main" -description = "World timezone definitions, modern and historical" name = "pytz" +version = "2021.1" +description = "World timezone definitions, modern and historical" +category = "main" optional = false python-versions = "*" -version = "2021.1" [[package]] -category = "dev" -description = "Python for Window Extensions" -marker = "platform_system == \"Windows\" and platform_python_implementation != \"PyPy\" or sys_platform == \"win32\"" name = "pywin32" +version = "301" +description = "Python for Window Extensions" +category = "dev" optional = false python-versions = "*" -version = "301" [[package]] -category = "main" -description = "YAML parser and emitter for Python" name = "pyyaml" +version = "5.4.1" +description = "YAML parser and emitter for Python" +category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*" -version = "5.4.1" [[package]] -category = "dev" -description = "Python bindings for 0MQ" name = "pyzmq" +version = "22.3.0" +description = "Python bindings for 0MQ" +category = "dev" optional = false python-versions = ">=3.6" -version = "22.2.1" [package.dependencies] -cffi = "*" -py = "*" +cffi = {version = "*", markers = "implementation_name == \"pypy\""} +py = {version = "*", markers = "implementation_name == \"pypy\""} [[package]] -category = "dev" -description = "A docutils-compatibility bridge to CommonMark, enabling you to write CommonMark inside of Docutils & Sphinx projects." name = "recommonmark" +version = "0.7.1" +description = "A docutils-compatibility bridge to CommonMark, enabling you to write CommonMark inside of Docutils & Sphinx projects." +category = "dev" optional = false python-versions = "*" -version = "0.7.1" [package.dependencies] commonmark = ">=0.8.1" @@ -1677,71 +1644,64 @@ docutils = ">=0.11" sphinx = ">=1.3.1" [[package]] -category = "dev" -description = "Alternative regular expression module, to replace re." name = "regex" +version = "2021.8.28" +description = "Alternative regular expression module, to replace re." +category = "dev" optional = false python-versions = "*" -version = "2021.8.3" [[package]] -category = "main" -description = "Python HTTP for Humans." name = "requests" +version = "2.26.0" +description = "Python HTTP for Humans." +category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*" -version = "2.26.0" [package.dependencies] certifi = ">=2017.4.17" +charset-normalizer = {version = ">=2.0.0,<2.1.0", markers = "python_version >= \"3\""} +idna = {version = ">=2.5,<4", markers = "python_version >= \"3\""} urllib3 = ">=1.21.1,<1.27" -[package.dependencies.charset-normalizer] -python = ">=3" -version = ">=2.0.0,<2.1.0" - -[package.dependencies.idna] -python = ">=3" -version = ">=2.5,<4" - [package.extras] -socks = ["PySocks (>=1.5.6,<1.5.7 || >1.5.7)", "win-inet-pton"] +socks = ["PySocks (>=1.5.6,!=1.5.7)", "win-inet-pton"] use_chardet_on_py3 = ["chardet (>=3.0.2,<5)"] [[package]] -category = "main" -description = "OAuthlib authentication support for Requests." name = "requests-oauthlib" +version = "1.3.0" +description = "OAuthlib authentication support for Requests." +category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "1.3.0" [package.dependencies] oauthlib = ">=3.0.0" requests = ">=2.0.0" [package.extras] -rsa = ["oauthlib (>=3.0.0)"] +rsa = ["oauthlib[signedtoken] (>=3.0.0)"] [[package]] -category = "main" -description = "Pure-Python RSA implementation" -marker = "python_version >= \"3.6\"" name = "rsa" +version = "4.7.2" +description = "Pure-Python RSA implementation" +category = "main" optional = false python-versions = ">=3.5, <4" -version = "4.7.2" [package.dependencies] pyasn1 = ">=0.1.3" [[package]] -category = "main" -description = "A set of python modules for machine learning and data mining" name = "scikit-learn" +version = "0.24.2" +description = "A set of python modules for machine learning and data mining" +category = "main" optional = false python-versions = ">=3.6" -version = "0.24.2" [package.dependencies] joblib = ">=0.11" @@ -1756,40 +1716,39 @@ examples = ["matplotlib (>=2.1.1)", "scikit-image (>=0.13)", "pandas (>=0.25.0)" tests = ["matplotlib (>=2.1.1)", "scikit-image (>=0.13)", "pandas (>=0.25.0)", "pytest (>=5.0.1)", "pytest-cov (>=2.9.0)", "flake8 (>=3.8.2)", "mypy (>=0.770)", "pyamg (>=4.0.0)"] [[package]] -category = "main" -description = "SciPy: Scientific Library for Python" name = "scipy" +version = "1.6.1" +description = "SciPy: Scientific Library for Python" +category = "main" optional = false python-versions = ">=3.7" -version = "1.6.1" [package.dependencies] numpy = ">=1.16.5" [[package]] -category = "main" -description = "Python 2 and 3 compatibility utilities" name = "six" +version = "1.16.0" +description = "Python 2 and 3 compatibility utilities" +category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*" -version = "1.16.0" [[package]] -category = "dev" -description = "This package provides 29 stemmers for 28 languages generated from Snowball algorithms." name = "snowballstemmer" +version = "2.1.0" +description = "This package provides 29 stemmers for 28 languages generated from Snowball algorithms." +category = "dev" optional = false python-versions = "*" -version = "2.1.0" [[package]] -category = "dev" -description = "A modern CSS selector implementation for Beautiful Soup." -marker = "python_version >= \"3.0\"" name = "soupsieve" +version = "2.2.1" +description = "A modern CSS selector implementation for Beautiful Soup." +category = "dev" optional = false python-versions = ">=3.6" -version = "2.2.1" [[package]] name = "sphinx" @@ -1798,21 +1757,22 @@ description = "Python documentation generator" category = "dev" description = "Python documentation generator" name = "sphinx" +version = "4.2.0" +description = "Python documentation generator" +category = "dev" optional = false python-versions = ">=3.6" -version = "4.1.2" [package.dependencies] -Jinja2 = ">=2.3" -Pygments = ">=2.0" alabaster = ">=0.7,<0.8" babel = ">=1.3" -colorama = ">=0.3.5" +colorama = {version = ">=0.3.5", markers = "sys_platform == \"win32\""} docutils = ">=0.14,<0.18" imagesize = "*" +Jinja2 = ">=2.3" packaging = "*" +Pygments = ">=2.0" requests = ">=2.5.0" -setuptools = "*" snowballstemmer = ">=1.1" sphinxcontrib-applehelp = "*" sphinxcontrib-devhelp = "*" @@ -1827,92 +1787,87 @@ lint = ["flake8 (>=3.5.0)", "isort", "mypy (>=0.900)", "docutils-stubs", "types- test = ["pytest", "pytest-cov", "html5lib", "cython", "typed-ast"] [[package]] -category = "dev" -description = "sphinxcontrib-applehelp is a sphinx extension which outputs Apple help books" name = "sphinxcontrib-applehelp" +version = "1.0.2" +description = "sphinxcontrib-applehelp is a sphinx extension which outputs Apple help books" +category = "dev" optional = false python-versions = ">=3.5" -version = "1.0.2" [package.extras] lint = ["flake8", "mypy", "docutils-stubs"] test = ["pytest"] [[package]] -category = "dev" -description = "sphinxcontrib-devhelp is a sphinx extension which outputs Devhelp document." name = "sphinxcontrib-devhelp" +version = "1.0.2" +description = "sphinxcontrib-devhelp is a sphinx extension which outputs Devhelp document." +category = "dev" optional = false python-versions = ">=3.5" -version = "1.0.2" [package.extras] lint = ["flake8", "mypy", "docutils-stubs"] test = ["pytest"] [[package]] -category = "dev" -description = "sphinxcontrib-htmlhelp is a sphinx extension which renders HTML help files" name = "sphinxcontrib-htmlhelp" +version = "2.0.0" +description = "sphinxcontrib-htmlhelp is a sphinx extension which renders HTML help files" +category = "dev" optional = false python-versions = ">=3.6" -version = "2.0.0" [package.extras] lint = ["flake8", "mypy", "docutils-stubs"] test = ["pytest", "html5lib"] [[package]] -category = "dev" -description = "A sphinx extension which renders display math in HTML via JavaScript" name = "sphinxcontrib-jsmath" +version = "1.0.1" +description = "A sphinx extension which renders display math in HTML via JavaScript" +category = "dev" optional = false python-versions = ">=3.5" -version = "1.0.1" [package.extras] test = ["pytest", "flake8", "mypy"] [[package]] -category = "dev" -description = "sphinxcontrib-qthelp is a sphinx extension which outputs QtHelp document." name = "sphinxcontrib-qthelp" +version = "1.0.3" +description = "sphinxcontrib-qthelp is a sphinx extension which outputs QtHelp document." +category = "dev" optional = false python-versions = ">=3.5" -version = "1.0.3" [package.extras] lint = ["flake8", "mypy", "docutils-stubs"] test = ["pytest"] [[package]] -category = "dev" -description = "sphinxcontrib-serializinghtml is a sphinx extension which outputs \"serialized\" HTML files (json and pickle)." name = "sphinxcontrib-serializinghtml" +version = "1.1.5" +description = "sphinxcontrib-serializinghtml is a sphinx extension which outputs \"serialized\" HTML files (json and pickle)." +category = "dev" optional = false python-versions = ">=3.5" -version = "1.1.5" [package.extras] lint = ["flake8", "mypy", "docutils-stubs"] test = ["pytest"] [[package]] -category = "main" -description = "Database Abstraction Library" name = "sqlalchemy" +version = "1.4.23" +description = "Database Abstraction Library" +category = "main" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7" -version = "1.4.22" [package.dependencies] -[package.dependencies.greenlet] -python = ">=3" -version = "!=0.4.17" - -[package.dependencies.importlib-metadata] -python = "<3.8" -version = "*" +greenlet = {version = "!=0.4.17", markers = "python_version >= \"3\" and platform_machine in \"x86_64 X86_64 aarch64 AARCH64 ppc64le PPC64LE amd64 AMD64 win32 WIN32\""} +importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} [package.extras] aiomysql = ["greenlet (!=0.4.17)", "aiomysql"] @@ -1922,7 +1877,7 @@ mariadb_connector = ["mariadb (>=1.0.1)"] mssql = ["pyodbc"] mssql_pymssql = ["pymssql"] mssql_pyodbc = ["pyodbc"] -mypy = ["sqlalchemy2-stubs", "mypy (>=0.800)"] +mypy = ["sqlalchemy2-stubs", "mypy (>=0.910)"] mysql = ["mysqlclient (>=1.4.0,<2)", "mysqlclient (>=1.4.0)"] mysql_connector = ["mysqlconnector"] oracle = ["cx_oracle (>=7,<8)", "cx_oracle (>=7)"] @@ -1935,12 +1890,12 @@ pymysql = ["pymysql (<1)", "pymysql"] sqlcipher = ["sqlcipher3-binary"] [[package]] -category = "main" -description = "Statistical computations and models for Python" name = "statsmodels" +version = "0.12.2" +description = "Statistical computations and models for Python" +category = "main" optional = false python-versions = ">=3.6" -version = "0.12.2" [package.dependencies] numpy = ">=1.15" @@ -1954,27 +1909,24 @@ develop = ["cython (>=0.29)"] docs = ["sphinx", "nbconvert", "jupyter-client", "ipykernel", "matplotlib", "nbformat", "numpydoc", "pandas-datareader"] [[package]] -category = "main" -description = "Manage dynamic plugins for Python applications" name = "stevedore" +version = "3.4.0" +description = "Manage dynamic plugins for Python applications" +category = "main" optional = false python-versions = ">=3.6" -version = "3.3.0" [package.dependencies] +importlib-metadata = {version = ">=1.7.0", markers = "python_version < \"3.8\""} pbr = ">=2.0.0,<2.1.0 || 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+description = "The comprehensive WSGI web application library." category = "main" -description = "A built-package format for Python" -marker = "python_version >= \"3\"" -name = "wheel" optional = false -python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7" -version = "0.36.2" +python-versions = ">=3.6" [package.extras] -test = ["pytest (>=3.0.0)", "pytest-cov"] +watchdog = ["watchdog"] [[package]] -category = "dev" -description = "Module for decorators, wrappers and monkey patching." name = "wrapt" +version = "1.12.1" +description = "Module for decorators, wrappers and monkey patching." +category = "dev" optional = false python-versions = "*" -version = "1.12.1" [[package]] -category = "main" -description = "Yet another URL library" name = "yarl" +version = "1.6.3" +description = "Yet another URL library" +category = "main" optional = false python-versions = ">=3.6" -version = "1.6.3" [package.dependencies] idna = ">=2.0" multidict = ">=4.0" - 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pandas = "^1.3.0" -scikit-learn = ">=0.23,<0.25" +scikit-learn = "^0.24.0" matplotlib = "*" statsmodels = "*" @@ -103,5 +103,5 @@ dirty = false style = "semver" # semantic versioning [build-system] # make the package pip installable -requires = ["poetry_core>=1.0.0", "poetry-dynamic-versioning>=0.9.0"] +requires = ["poetry_core>=1.1.0", "poetry-dynamic-versioning>=0.9.0"] build-backend = "poetry.core.masonry.api" From d2bf407377cd520efc0d45d474a932bc17f51097 Mon Sep 17 00:00:00 2001 From: Jan Beitner Date: Sat, 25 Sep 2021 19:46:33 +0100 Subject: [PATCH 4/9] Fix some ambigious dtypes --- pytorch_forecasting/data/encoders.py | 2 +- pytorch_forecasting/data/timeseries.py | 16 ++++++++-------- pytorch_forecasting/models/nbeats/sub_modules.py | 2 +- 3 files changed, 10 insertions(+), 10 deletions(-) diff --git a/pytorch_forecasting/data/encoders.py b/pytorch_forecasting/data/encoders.py index 88b2baf7..a1fcb7c2 100644 --- a/pytorch_forecasting/data/encoders.py +++ b/pytorch_forecasting/data/encoders.py @@ -188,7 +188,7 @@ def get_parameters(self, groups=None, group_names=None) -> np.ndarray: Returns: np.ndarray: zero array. """ - return np.zeros(2, dtype=np.float) + return np.zeros(2, dtype=np.float64) def _plus_one(x): diff --git a/pytorch_forecasting/data/timeseries.py b/pytorch_forecasting/data/timeseries.py index c42bcb3b..497cd1b1 100644 --- a/pytorch_forecasting/data/timeseries.py +++ b/pytorch_forecasting/data/timeseries.py @@ -921,22 +921,22 @@ def _data_to_tensors(self, data: pd.DataFrame) -> Dict[str, torch.Tensor]: """ index = check_for_nonfinite( - torch.tensor(data[self._group_ids].to_numpy(np.long), dtype=torch.long), self.group_ids + torch.tensor(data[self._group_ids].to_numpy(np.int64), dtype=torch.int64), self.group_ids ) time = check_for_nonfinite( - torch.tensor(data["__time_idx__"].to_numpy(np.long), dtype=torch.long), self.time_idx + torch.tensor(data["__time_idx__"].to_numpy(np.int64), dtype=torch.int64), self.time_idx ) # categorical covariates categorical = check_for_nonfinite( - torch.tensor(data[self.flat_categoricals].to_numpy(np.long), dtype=torch.long), self.flat_categoricals + torch.tensor(data[self.flat_categoricals].to_numpy(np.int64), dtype=torch.int64), self.flat_categoricals ) # get weight if self.weight is not None: weight = check_for_nonfinite( torch.tensor( - data["__weight__"].to_numpy(dtype=np.float), + data["__weight__"].to_numpy(dtype=np.float64), dtype=torch.float, ), self.weight, @@ -948,7 +948,7 @@ def _data_to_tensors(self, data: pd.DataFrame) -> Dict[str, torch.Tensor]: if isinstance(self.target_normalizer, NaNLabelEncoder): target = [ check_for_nonfinite( - torch.tensor(data[f"__target__{self.target}"].to_numpy(dtype=np.long), dtype=torch.long), + torch.tensor(data[f"__target__{self.target}"].to_numpy(dtype=np.int64), dtype=torch.long), self.target, ) ] @@ -958,7 +958,7 @@ def _data_to_tensors(self, data: pd.DataFrame) -> Dict[str, torch.Tensor]: check_for_nonfinite( torch.tensor( data[f"__target__{name}"].to_numpy( - dtype=[np.float, np.long][data[name].dtype.kind in "bi"] + dtype=[np.float64, np.int64][data[name].dtype.kind in "bi"] ), dtype=[torch.float, torch.long][data[name].dtype.kind in "bi"], ), @@ -969,14 +969,14 @@ def _data_to_tensors(self, data: pd.DataFrame) -> Dict[str, torch.Tensor]: else: target = [ check_for_nonfinite( - torch.tensor(data[f"__target__{self.target}"].to_numpy(dtype=np.float), dtype=torch.float), + torch.tensor(data[f"__target__{self.target}"].to_numpy(dtype=np.float64), dtype=torch.float), self.target, ) ] # continuous covariates continuous = check_for_nonfinite( - torch.tensor(data[self.reals].to_numpy(dtype=np.float), dtype=torch.float), self.reals + torch.tensor(data[self.reals].to_numpy(dtype=np.float64), dtype=torch.float), self.reals ) tensors = dict( diff --git a/pytorch_forecasting/models/nbeats/sub_modules.py b/pytorch_forecasting/models/nbeats/sub_modules.py index 894f96c0..8711c857 100644 --- a/pytorch_forecasting/models/nbeats/sub_modules.py +++ b/pytorch_forecasting/models/nbeats/sub_modules.py @@ -26,7 +26,7 @@ def linspace(backcast_length: int, forecast_length: int, centered: bool = False) norm = backcast_length + forecast_length start = 0 stop = backcast_length + forecast_length - 1 - lin_space = np.linspace(start / norm, stop / norm, backcast_length + forecast_length, dtype=np.float32) + lin_space = np.linspace(start / norm, stop / norm, backcast_length + forecast_length, dtype=np.float6432) b_ls = lin_space[:backcast_length] f_ls = lin_space[backcast_length:] return b_ls, f_ls From f7c56fc4a89f52008bf7087c27bce25c4696fc17 Mon Sep 17 00:00:00 2001 From: Jan Beitner Date: Sat, 25 Sep 2021 19:47:59 +0100 Subject: [PATCH 5/9] Fix unsavable hparams --- pytorch_forecasting/models/base_model.py | 37 ++++++++++++++++++++---- 1 file changed, 32 insertions(+), 5 deletions(-) diff --git a/pytorch_forecasting/models/base_model.py b/pytorch_forecasting/models/base_model.py index fb0441ce..18d5b338 100644 --- a/pytorch_forecasting/models/base_model.py +++ b/pytorch_forecasting/models/base_model.py @@ -2,6 +2,7 @@ Timeseries models share a number of common characteristics. This module implements these in a common base class. """ from collections import namedtuple +import copy from copy import deepcopy import inspect from typing import Any, Callable, Dict, Iterable, List, Tuple, Union @@ -19,6 +20,7 @@ from torch.optim.lr_scheduler import LambdaLR, ReduceLROnPlateau from torch.utils.data import DataLoader from tqdm.autonotebook import tqdm +import yaml from pytorch_forecasting.data import TimeSeriesDataSet from pytorch_forecasting.data.encoders import EncoderNormalizer, GroupNormalizer, MultiNormalizer, NaNLabelEncoder @@ -168,6 +170,8 @@ def forward(self, x): """ + CHECKPOINT_HYPER_PARAMS_SPECIAL_KEY = "__special_save__" + def __init__( self, log_interval: Union[int, float] = -1, @@ -220,7 +224,9 @@ def __init__( # update hparams frame = inspect.currentframe() init_args = get_init_args(frame) - self.save_hyperparameters({name: val for name, val in init_args.items() if name not in self.hparams}) + self.save_hyperparameters( + {name: val for name, val in init_args.items() if name not in self.hparams and name not in ["self"]} + ) # update log interval if not defined if self.hparams.log_val_interval is None: @@ -236,7 +242,23 @@ def __init__( if not hasattr(self, "output_transformer"): self.output_transformer = output_transformer if not hasattr(self, "optimizer"): # callables are removed from hyperparameters, so better to save them - self._optimizer = self.hparams.optimizer + self.optimizer = self.hparams.optimizer + + # delete everything from hparams that cannot be serialized with yaml dump + hparams_to_delete = [] + for k, v in self.hparams.items(): + try: + yaml.dump(v) + except: # noqa + hparams_to_delete.append(k) + if not hasattr(self, k): + setattr(self, k, v) + + self.hparams_special = getattr(self, "hparams_special", []) + self.hparams_special.extend(hparams_to_delete) + for k in hparams_to_delete: + del self._hparams[k] + del self._hparams_initial[k] @property def n_targets(self) -> int: @@ -844,13 +866,13 @@ def configure_optimizers(self): lr = lrs[0] else: lr = lrs - if callable(self._optimizer): + if callable(self.optimizer): try: - optimizer = self._optimizer( + optimizer = self.optimizer( self.parameters(), lr=lr, weight_decay=self.hparams.weight_decay, **optimizer_params ) except TypeError: # in case there is no weight decay - optimizer = self._optimizer(self.parameters(), lr=lr, **optimizer_params) + optimizer = self.optimizer(self.parameters(), lr=lr, **optimizer_params) elif self.hparams.optimizer == "adam": optimizer = torch.optim.Adam(self.parameters(), lr=lr) elif self.hparams.optimizer == "adamw": @@ -936,6 +958,8 @@ def on_save_checkpoint(self, checkpoint: Dict[str, Any]) -> None: ) # add dataset parameters for making fast predictions # hyper parameters are passed as arguments directly and not as single dictionary checkpoint["hparams_name"] = "kwargs" + # save specials + checkpoint[self.CHECKPOINT_HYPER_PARAMS_SPECIAL_KEY] = {k: getattr(self, k) for k in self.hparams_special} @property def target_names(self) -> List[str]: @@ -952,6 +976,9 @@ def target_names(self) -> List[str]: def on_load_checkpoint(self, checkpoint: Dict[str, Any]) -> None: self.dataset_parameters = checkpoint.get("dataset_parameters", None) + # load specials + for k, v in checkpoint[self.CHECKPOINT_HYPER_PARAMS_SPECIAL_KEY].items(): + setattr(self, k, v) def to_prediction(self, out: Dict[str, Any], use_metric: bool = True, **kwargs): """ From 686949d84fb0387023c0dd8d36911f9b45a52fb6 Mon Sep 17 00:00:00 2001 From: Jan Beitner Date: Sat, 25 Sep 2021 19:50:52 +0100 Subject: [PATCH 6/9] Update deps --- poetry.lock | 404 ++++++++++++++++++++++------------------------------ 1 file changed, 174 insertions(+), 230 deletions(-) diff --git a/poetry.lock b/poetry.lock index 4f93818c..4d3dbcd9 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,6 +1,6 @@ [[package]] name = "absl-py" -version = "0.13.0" +version = "0.14.0" description = "Abseil Python Common Libraries, see https://github.com/abseil/abseil-py." category = "main" optional = false @@ -59,12 +59,12 @@ version = "0.1.2" description = "Disable App Nap on macOS >= 10.9" category = "dev" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +python-versions = "*" [[package]] -name = "appnope" -version = "0.1.2" -description = "Disable App Nap on macOS >= 10.9" +name = "argcomplete" +version = "1.12.3" +description = "Bash tab completion for argparse" category = "dev" optional = false python-versions = "*" @@ -80,11 +80,6 @@ name = "astroid" version = "2.8.0" description = "An abstract syntax tree for Python with inference support." category = "dev" -description = "An abstract syntax tree for Python with inference support." -name = "astroid" -version = "2.8.0" -description = "An abstract syntax tree for Python with inference support." -category = "dev" optional = false python-versions = "~=3.6" @@ -171,11 +166,6 @@ name = "black" version = "21.9b0" description = "The uncompromising code formatter." category = "dev" -description = "The uncompromising code formatter." -name = "black" -version = "21.9b0" -description = "The uncompromising code formatter." -category = "dev" optional = false python-versions = ">=3.6.2" @@ -443,12 +433,7 @@ pyflakes = ">=2.3.0,<2.4.0" [[package]] name = "fsspec" -version = "2021.8.1" -description = "File-system specification" -category = "main" -description = "File-system specification" -name = "fsspec" -version = "2021.8.1" +version = "2021.9.0" description = "File-system specification" category = "main" optional = false @@ -461,15 +446,20 @@ requests = {version = "*", optional = true, markers = "extra == \"http\""} [package.extras] abfs = ["adlfs"] adl = ["adlfs"] +arrow = ["pyarrow (>=1)"] dask = ["dask", "distributed"] dropbox = ["dropboxdrivefs", "requests", "dropbox"] entrypoints = ["importlib-metadata"] +fuse = ["fusepy"] gcs = ["gcsfs"] git = ["pygit2"] github = ["requests"] gs = ["gcsfs"] +gui = ["panel"] hdfs = ["pyarrow (>=1)"] http = ["requests", "aiohttp"] +libarchive = ["libarchive-c"] +oci = ["ocifs"] s3 = ["s3fs"] sftp = ["paramiko"] smb = ["smbprotocol"] @@ -631,7 +621,7 @@ test = ["pytest (!=5.3.4)", "pytest-cov", "flaky", "nose", "ipyparallel"] [[package]] name = "ipython" -version = "7.27.0" +version = "7.28.0" description = "IPython: Productive Interactive Computing" category = "dev" optional = false @@ -933,7 +923,7 @@ test = ["codecov", "coverage", "ipython", "ipykernel", "ipywidgets", "pytest (>= [[package]] name = "nbconvert" -version = "6.1.0" +version = "6.2.0" description = "Converting Jupyter Notebooks" category = "dev" optional = false @@ -955,11 +945,11 @@ testpath = "*" traitlets = ">=5.0" [package.extras] -all = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pyppeteer (==0.2.2)", "tornado (>=4.0)", "sphinx (>=1.5.1)", "sphinx-rtd-theme", "nbsphinx (>=0.2.12)", "ipython"] +all = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pyppeteer (==0.2.6)", "tornado (>=4.0)", "sphinx (>=1.5.1)", "sphinx-rtd-theme", "nbsphinx (>=0.2.12)", "ipython"] docs = ["sphinx (>=1.5.1)", "sphinx-rtd-theme", "nbsphinx (>=0.2.12)", "ipython"] serve = ["tornado (>=4.0)"] -test = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pyppeteer (==0.2.2)"] -webpdf = ["pyppeteer (==0.2.2)"] +test = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pyppeteer (==0.2.6)"] +webpdf = ["pyppeteer (==0.2.6)"] [[package]] name = "nbformat" @@ -984,11 +974,6 @@ name = "nbsphinx" version = "0.8.7" description = "Jupyter Notebook Tools for Sphinx" category = "dev" -description = "Jupyter Notebook Tools for Sphinx" -name = "nbsphinx" -version = "0.8.7" -description = "Jupyter Notebook Tools for Sphinx" -category = "dev" optional = false python-versions = ">=3.6" @@ -1125,8 +1110,6 @@ name = "pathspec" version = "0.9.0" description = "Utility library for gitignore style pattern matching of file paths." category = "dev" -description = "Utility library for gitignore style pattern matching of file paths." -name = "pathspec" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7" @@ -1179,7 +1162,7 @@ python-versions = ">=3.6" [[package]] name = "platformdirs" -version = "2.2.0" +version = "2.3.0" description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." category = "dev" optional = false @@ -1191,11 +1174,6 @@ test = ["appdirs (==1.4.4)", "pytest (>=6)", "pytest-cov (>=2.7)", "pytest-mock [[package]] name = "pluggy" -version = "0.13.1" -description = "plugin and hook calling mechanisms for python" -category = "main" -description = "plugin and hook calling mechanisms for python" -name = "pluggy" version = "1.0.0" description = "plugin and hook calling mechanisms for python" category = "main" @@ -1375,11 +1353,6 @@ name = "pylint" version = "2.11.1" description = "python code static checker" category = "dev" -description = "python code static checker" -name = "pylint" -version = "2.11.1" -description = "python code static checker" -category = "dev" optional = false python-versions = "~=3.6" @@ -1448,11 +1421,6 @@ name = "pytest" version = "6.2.5" description = "pytest: simple powerful testing with Python" category = "main" -description = "pytest: simple powerful testing with Python" -name = "pytest" -version = "6.2.5" -description = "pytest: simple powerful testing with Python" -category = "main" optional = false python-versions = ">=3.6" @@ -1524,7 +1492,7 @@ termcolor = ">=1.1.0" [[package]] name = "pytest-xdist" -version = "2.3.0" +version = "2.4.0" description = "pytest xdist plugin for distributed testing and loop-on-failing modes" category = "dev" optional = false @@ -1537,6 +1505,7 @@ pytest-forked = "*" [package.extras] psutil = ["psutil (>=3.0)"] +setproctitle = ["setproctitle"] testing = ["filelock"] [[package]] @@ -1551,21 +1520,8 @@ python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7" six = ">=1.5" [[package]] -category = "main" -description = "Programmatically open an editor, capture the result." -name = "python-editor" -optional = false -python-versions = "*" -version = "1.0.4" - -[[package]] -name = "pytorch-lightning" -version = "1.4.7" -description = "PyTorch Lightning is the lightweight PyTorch wrapper for ML researchers. Scale your models. Write less boilerplate." -category = "main" -description = "PyTorch Lightning is the lightweight PyTorch wrapper for ML researchers. Scale your models. Write less boilerplate." name = "pytorch-lightning" -version = "1.4.7" +version = "1.4.8" description = "PyTorch Lightning is the lightweight PyTorch wrapper for ML researchers. Scale your models. Write less boilerplate." category = "main" optional = false @@ -1645,7 +1601,7 @@ sphinx = ">=1.3.1" [[package]] name = "regex" -version = "2021.8.28" +version = "2021.9.24" description = "Alternative regular expression module, to replace re." category = "dev" optional = false @@ -1755,11 +1711,6 @@ name = "sphinx" version = "4.2.0" description = "Python documentation generator" category = "dev" -description = "Python documentation generator" -name = "sphinx" -version = "4.2.0" -description = "Python documentation generator" -category = "dev" optional = false python-versions = ">=3.6" @@ -1859,27 +1810,28 @@ test = ["pytest"] [[package]] name = "sqlalchemy" -version = "1.4.23" +version = "1.4.25" description = "Database Abstraction Library" category = "main" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7" [package.dependencies] -greenlet = {version = "!=0.4.17", markers = "python_version >= \"3\" and platform_machine in \"x86_64 X86_64 aarch64 AARCH64 ppc64le PPC64LE amd64 AMD64 win32 WIN32\""} +greenlet = {version = "!=0.4.17", markers = "python_version >= \"3\" and (platform_machine == \"aarch64\" or platform_machine == \"ppc64le\" or platform_machine == \"x86_64\" or platform_machine == \"amd64\" or platform_machine == \"AMD64\" or platform_machine == \"win32\" or platform_machine == \"WIN32\")"} importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} [package.extras] aiomysql = ["greenlet (!=0.4.17)", "aiomysql"] -aiosqlite = ["greenlet (!=0.4.17)", "aiosqlite"] +aiosqlite = ["typing_extensions (!=3.10.0.1)", "greenlet (!=0.4.17)", "aiosqlite"] asyncio = ["greenlet (!=0.4.17)"] +asyncmy = ["greenlet (!=0.4.17)", "asyncmy (>=0.2.0)"] mariadb_connector = ["mariadb (>=1.0.1)"] mssql = ["pyodbc"] mssql_pymssql = ["pymssql"] mssql_pyodbc = ["pyodbc"] mypy = ["sqlalchemy2-stubs", "mypy (>=0.910)"] mysql = ["mysqlclient (>=1.4.0,<2)", "mysqlclient (>=1.4.0)"] -mysql_connector = ["mysqlconnector"] +mysql_connector = ["mysql-connector-python"] oracle = ["cx_oracle (>=7,<8)", "cx_oracle (>=7)"] postgresql = ["psycopg2 (>=2.7)"] postgresql_asyncpg = ["greenlet (!=0.4.17)", "asyncpg"] @@ -2002,7 +1954,7 @@ python-versions = ">=3.6" [[package]] name = "torch" -version = "1.9.0" +version = "1.9.1" description = "Tensors and Dynamic neural networks in Python with strong GPU acceleration" category = "main" optional = false @@ -2077,17 +2029,12 @@ name = "typing-extensions" version = "3.10.0.2" description = "Backported and Experimental Type Hints for Python 3.5+" category = "main" -description = "Backported and Experimental Type Hints for Python 3.5+" -name = "typing-extensions" -version = "3.10.0.2" -description = "Backported and Experimental Type Hints for Python 3.5+" -category = "main" optional = false python-versions = "*" [[package]] name = "urllib3" -version = "1.26.6" +version = "1.26.7" description = "HTTP library with thread-safe connection pooling, file post, and more." 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logging hyperparameters (#688) +- Ensure MultiNormalizer fit state is detected (#681) +- Fix infinite loop in TimeDistributedEmbeddingBag (#672) ### Contributors - jdb78 - TKlerx +- chefPony +- eavae +- L0Z1K ## v0.9.0 Simplified API (04/06/2021) From 95d8491e3799c08802c3602c69599628daa0eef7 Mon Sep 17 00:00:00 2001 From: Jan Beitner Date: Sat, 25 Sep 2021 20:54:03 +0100 Subject: [PATCH 8/9] Improve hparams saving and loading --- pytorch_forecasting/models/base_model.py | 5 ++++- pytorch_forecasting/models/nbeats/sub_modules.py | 2 +- 2 files changed, 5 insertions(+), 2 deletions(-) diff --git a/pytorch_forecasting/models/base_model.py b/pytorch_forecasting/models/base_model.py index 18d5b338..447e4481 100644 --- a/pytorch_forecasting/models/base_model.py +++ b/pytorch_forecasting/models/base_model.py @@ -244,7 +244,8 @@ def __init__( if not hasattr(self, "optimizer"): # callables are removed from hyperparameters, so better to save them self.optimizer = self.hparams.optimizer - # delete everything from hparams that cannot be serialized with yaml dump + # delete everything from hparams that cannot be serialized with yaml.dump + # which is particularly important for tensorboard logging hparams_to_delete = [] for k, v in self.hparams.items(): try: @@ -960,6 +961,8 @@ def on_save_checkpoint(self, checkpoint: Dict[str, Any]) -> None: checkpoint["hparams_name"] = "kwargs" # save specials checkpoint[self.CHECKPOINT_HYPER_PARAMS_SPECIAL_KEY] = {k: getattr(self, k) for k in self.hparams_special} + # add special hparams them back to save the hparams correctly for checkpoint + checkpoint[self.CHECKPOINT_HYPER_PARAMS_KEY].update(checkpoint[self.CHECKPOINT_HYPER_PARAMS_SPECIAL_KEY]) @property def target_names(self) -> List[str]: diff --git a/pytorch_forecasting/models/nbeats/sub_modules.py b/pytorch_forecasting/models/nbeats/sub_modules.py index 8711c857..894f96c0 100644 --- a/pytorch_forecasting/models/nbeats/sub_modules.py +++ b/pytorch_forecasting/models/nbeats/sub_modules.py @@ -26,7 +26,7 @@ def linspace(backcast_length: int, forecast_length: int, centered: bool = False) norm = backcast_length + forecast_length start = 0 stop = backcast_length + forecast_length - 1 - lin_space = np.linspace(start / norm, stop / norm, backcast_length + forecast_length, dtype=np.float6432) + lin_space = np.linspace(start / norm, stop / norm, backcast_length + forecast_length, dtype=np.float32) b_ls = lin_space[:backcast_length] f_ls = lin_space[backcast_length:] return b_ls, f_ls From 271dd0bedb20c01696df6d3847ffefc79b28bf81 Mon Sep 17 00:00:00 2001 From: Jan Beitner Date: Sun, 26 Sep 2021 12:12:09 +0100 Subject: [PATCH 9/9] Adding release title --- CHANGELOG.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 39cd4b80..04fb4649 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,6 +1,6 @@ # Release Notes -## v0.9.1 UNRELEASED +## v0.9.1 Maintenance Release (26/09/2021) ### Added