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From Private to Protected, allows control from inherited classes #734

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From Private to Protected, allows control from inherited classes #734

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ec72c8e
Update PeptideWithSetModifications.cs
elaboy Oct 2, 2023
42cb591
clean up
elaboy Oct 2, 2023
1369921
Update PeptideWithSetModifications.cs
elaboy Oct 10, 2023
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10 changes: 5 additions & 5 deletions mzLib/Proteomics/ProteolyticDigestion/PeptideWithSetModifications.cs
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
 using Chemistry;
using Chemistry;
using MassSpectrometry;
using Proteomics.AminoAcidPolymer;
using Proteomics.Fragmentation;
Expand All @@ -22,11 +22,11 @@ public class PeptideWithSetModifications : ProteolyticPeptide
/// Dictionary of modifications on the peptide. The N terminus is index 1.
/// The key indicates which residue modification is on (with 1 being N terminus).
/// </summary>
[NonSerialized] private Dictionary<int, Modification> _allModsOneIsNterminus; //we currently only allow one mod per position
[NonSerialized] private bool? _hasChemicalFormulas;
[NonSerialized] protected Dictionary<int, Modification> _allModsOneIsNterminus; //we currently only allow one mod per position
[NonSerialized] protected bool? _hasChemicalFormulas;
[NonSerialized] private string _sequenceWithChemicalFormulas;
[NonSerialized] private double? _monoisotopicMass;
[NonSerialized] private double? _mostAbundantMonoisotopicMass;
[NonSerialized] protected double? _monoisotopicMass;
[NonSerialized] protected double? _mostAbundantMonoisotopicMass;
[NonSerialized] private ChemicalFormula _fullChemicalFormula;
[NonSerialized] private DigestionParams _digestionParams;
private static readonly double WaterMonoisotopicMass = PeriodicTable.GetElement("H").PrincipalIsotope.AtomicMass * 2 + PeriodicTable.GetElement("O").PrincipalIsotope.AtomicMass;
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