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Add leucine to chymo cleavage motif #759

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merged 33 commits into from
Feb 5, 2024
Merged

Add leucine to chymo cleavage motif #759

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a6b1639
correct Within calculation
Nov 18, 2021
fa4da8b
update unit tests
Nov 18, 2021
3246567
conflicts resolved back to upstream
Feb 4, 2022
a018d4d
Merge remote-tracking branch 'upstream/master'
Feb 15, 2022
15a37d0
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Feb 17, 2022
892fa45
this is the spot
Feb 18, 2022
211013c
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Feb 25, 2022
68104ee
Merge branch 'master' of https://github.com/trishorts/mzLib
trishorts Mar 9, 2022
d715a08
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Mar 16, 2022
3565522
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Mar 29, 2022
593872a
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trishorts Apr 13, 2022
42dd034
Merge branch 'master' of https://github.com/trishorts/mzLib
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Merge branch 'master' of https://github.com/trishorts/mzLib
Jun 14, 2022
28e05ae
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trishorts Jul 27, 2022
d673800
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675a0ae
Merge branch 'master' of https://github.com/trishorts/mzLib
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15d4baf
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trishorts Jun 29, 2023
b4ad231
add space
trishorts Jun 29, 2023
bc59b38
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2981dc5
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trishorts Dec 12, 2023
045b42c
update proteasesTsv
trishorts Feb 2, 2024
a79009b
Merge branch 'master' into addLtoChymoCleavageMotif
trishorts Feb 5, 2024
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4 changes: 2 additions & 2 deletions mzLib/Proteomics/ProteolyticDigestion/proteases.tsv
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Original file line number Diff line number Diff line change
@@ -1,8 +1,8 @@
Name Sequences Inducing Cleavage Sequences Preventing Cleavage Cleavage Terminus Cleavage Specificity PSI-MS Accession Number PSI-MS Name Site Regular Expression Cleavage Mass Shifts Notes
Arg-C R| full MS:1001303 Arg-C (?<=R)(?!P)
Asp-N |D full MS:1001304 Asp-N (?=[BD])
chymotrypsin (don't cleave before proline) "F[P]|,W[P]|,Y[P]|" full MS:1001306 Chymotrypsin (?<=[FYWL])(?!P)
chymotrypsin (cleave before proline) "F|,W|,Y|" full MS:1001306 Chymotrypsin (?<=[FYWL])
chymotrypsin (don't cleave before proline) "F[P]|,W[P]|,Y[P]|,L[P]|" full MS:1001306 Chymotrypsin (?<=[FYWL])(?!P)
chymotrypsin (cleave before proline) "F|,W|,Y|,L|" full MS:1001306 Chymotrypsin (?<=[FYWL])
CNBr M| full MS:1001307 CNBr (?<=M) Homoserine lactone on M
elastase "A|,V|,S|,G|,L|,I|" full Elastase (?<=[AVSGLI])
Glu-C E| full
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