fix: pydeseq2 #52

cmeesters · 2024-07-14T21:41:44Z

restored working condition
added additional outputs

… memory

…outputs

cmeesters · 2024-07-14T21:43:47Z

review and test thoroughly
take a look at the TODO items - if you can solve them, good. Else, I'll do it, when I'm back - do not hesitate to merge this PR anyway.
remove all print-statements before merging, add additional log statements, upon desire
note all questions you might have.

yeising

fixes #32

yeising and others added 10 commits July 11, 2024 15:05

fix: fixed read filter.py for read_length=0

a18f0ec

feat: samples lookup through params

fe89e92

fix: renamed tsv to all_counts

62e5890

chore: removed 3 bad samples

3b1f049

debug: until heatmap

5f0b6d5

fix: could not get the workflow to work without this insane amount of…

ce36ba4

… memory

feat: demanding correlation matrix and normalized counts (as csv) as …

054198b

…outputs

fix: requireing bam as input

26d3431

feat: working again, saver, needs cleaning up

cf7430a

fix: removed unnecessary R scripts

2311bea

cmeesters requested a review from yeising July 14, 2024 21:41

cmeesters assigned yeising Jul 14, 2024

yeising added 2 commits July 15, 2024 13:59

style: formatting + removed print statements

81b973a

style: snakefmt

bffe91e

yeising approved these changes Jul 18, 2024

View reviewed changes

yeising merged commit f8d566a into main Jul 18, 2024
4 of 5 checks passed

github-actions bot mentioned this pull request Jul 18, 2024

chore(main): release 1.1.0 #53

Closed

github-actions bot mentioned this pull request Aug 6, 2024

chore(main): release 1.1.0 #55

Closed

cmeesters mentioned this pull request Aug 6, 2024

fix: deseq2 script #32

Closed

This was referenced Aug 8, 2024

chore(main): release 1.1.0 #58

Closed

chore(main): release 1.1.0 #60

Closed

This was referenced Aug 15, 2024

chore(main): release 1.1.0 #61

Closed

chore(main): release 1.1.0 #63

Merged

cmeesters deleted the fix-pydeseq2 branch August 26, 2024 07:45

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