From d7a0de4a2b0cd36d9b141f9e9b717f98a4979ea6 Mon Sep 17 00:00:00 2001 From: Patrik Smeds Date: Wed, 9 Mar 2022 19:46:37 +0100 Subject: [PATCH] fix: bcftools filter cannot run with mem options and this will prevent mem-max to be set. (#464) --- bio/bcftools/filter/wrapper.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/bio/bcftools/filter/wrapper.py b/bio/bcftools/filter/wrapper.py index 3c0a342bec..601fadce67 100644 --- a/bio/bcftools/filter/wrapper.py +++ b/bio/bcftools/filter/wrapper.py @@ -7,7 +7,7 @@ from snakemake.shell import shell from snakemake_wrapper_utils.bcftools import get_bcftools_opts -bcftools_opts = get_bcftools_opts(snakemake) +bcftools_opts = get_bcftools_opts(snakemake, parse_memory=False) log = snakemake.log_fmt_shell(stdout=False, stderr=True) if len(snakemake.output) > 1: