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Do you have the specific statement where this happened? I'm not sure where the statement about Transposases with a variant would come from, can't find it.
Example from EMMAA covid model:
WARNING: [2021-08-17 14:29:41] indra.assemblers.pybel.assembler - Node should not have variants: bp(MESH:D019895 ! Transposases), [{'kind': 'hgvs', 'hgvs': 'p.?'}]
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