diff --git a/doc/command-line.md b/doc/command-line.md index 03e12b7a4f..2908bd18f2 100644 --- a/doc/command-line.md +++ b/doc/command-line.md @@ -791,7 +791,7 @@ superkingdom, phylum, class, order, family, genus, and species. to ignore case and `-v` to output only taxonomic lineages that do _not_ match the pattern. -Currently only CSV output is supported; use `sourmash tax prepare` to +Currently only CSV output (optionally gzipped) is supported; use `sourmash tax prepare` to convert CSV output from `tax grep` into a sqlite3 taxonomy database. ## `sourmash lca` subcommands for in-memory taxonomy integration