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update usage string
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ctb committed Aug 7, 2022
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12 changes: 6 additions & 6 deletions src/sourmash/cli/tax/grep.py
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sourmash tax grep <term> --taxonomy-csv <taxonomy_file> [ ... ]
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The 'tax prepare' command reads in one or more taxonomy databases
and saves them into a new database. It can be used to combine databases
in the desired order, as well as output different database formats.
`sourmash tax grep` searches taxonomies for matching strings,
optionally restricting the string search to a specific taxonomic rank.
It creates new files containing matching taxonomic entries; these new
files can serve as taxonomies and can also be used as picklists.
Please see the 'tax prepare' documentation for more details:
https://sourmash.readthedocs.io/en/latest/command-line.html#sourmash-tax-prepare-prepare-and-or-combine-taxonomy-files
Please see the 'tax grep' documentation for more details:
https://sourmash.readthedocs.io/en/latest/command-line.html#sourmash-tax-grep-subset-taxonomies-and-create-picklists-based-on-taxonomy-string-matches
"""

import sourmash
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