From a3914f537aeb6ecc12a5a0c7500b34803f3462cc Mon Sep 17 00:00:00 2001 From: "C. Titus Brown" Date: Sun, 7 Aug 2022 06:32:45 -0700 Subject: [PATCH] update usage string --- src/sourmash/cli/tax/grep.py | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/src/sourmash/cli/tax/grep.py b/src/sourmash/cli/tax/grep.py index 577e96ed6f..2c88f5dc99 100644 --- a/src/sourmash/cli/tax/grep.py +++ b/src/sourmash/cli/tax/grep.py @@ -4,13 +4,13 @@ sourmash tax grep --taxonomy-csv [ ... ] -@@ -The 'tax prepare' command reads in one or more taxonomy databases -and saves them into a new database. It can be used to combine databases -in the desired order, as well as output different database formats. +`sourmash tax grep` searches taxonomies for matching strings, +optionally restricting the string search to a specific taxonomic rank. +It creates new files containing matching taxonomic entries; these new +files can serve as taxonomies and can also be used as picklists. -Please see the 'tax prepare' documentation for more details: - https://sourmash.readthedocs.io/en/latest/command-line.html#sourmash-tax-prepare-prepare-and-or-combine-taxonomy-files +Please see the 'tax grep' documentation for more details: + https://sourmash.readthedocs.io/en/latest/command-line.html#sourmash-tax-grep-subset-taxonomies-and-create-picklists-based-on-taxonomy-string-matches """ import sourmash