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add a tax grep command? #1868

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ctb opened this issue Mar 7, 2022 · 1 comment · Fixed by #2178
Closed

add a tax grep command? #1868

ctb opened this issue Mar 7, 2022 · 1 comment · Fixed by #2178

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@ctb
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ctb commented Mar 7, 2022

I'm not 100% sure how it would work, but it would be nice to be able to search all Cyanobacteria genomes, for example, without going through the trouble of making a picklist and then subsetting it.

so I think sourmash tax grep might be nice. Maybe it could work by taking a taxonomy file and a manifest file or a database, and then outputting a picklist?
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[MRG] implement tax grep to produce identifier picklists from taxonomies sourmash-bio/sourmash
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