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When we do this, it would be really neat to allow signature selection on the taxonomy, e.g. --include s__Phaeobacter. Yes, we can currently do this with sig grep or picklists using the taxonomy file, but seamless integration would be great.
I wrote:
This doesn't belong in sourmash tax which is specific to taxonomy manipulations - where this really belongs is somewhere generic to all the other sourmash subcommands,as with picklists and --include/--exclude. We want the rest of sourmash to "understand" taxonomies when they are present.
and this then connects with other metadata ideas e.g. stuff in #2180 and #1916.
The text was updated successfully, but these errors were encountered:
ctb
changed the title
provide generic way(s) to select taxonomy on sourmash commands
provide generic way(s) to select taxonomic lineages on sourmash commands
Aug 14, 2022
starting from discussion here,
and here:
I wrote:
and this then connects with other metadata ideas e.g. stuff in #2180 and #1916.
The text was updated successfully, but these errors were encountered: