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The CSV parsing code in src/sourmash/lca/command_index.py is just terribly complicated and parts of it (--no-headers, for example) are not even tested.
Given the ongoing maintenance and expansion of tax taxonomy handling code, we should switch to using it (mildly ironic, since some of the tax code was based on the LCA code, I think?)
ref simplifying the way we handle identifiers, #1962
The text was updated successfully, but these errors were encountered:
The CSV parsing code in
src/sourmash/lca/command_index.py
is just terribly complicated and parts of it (--no-headers
, for example) are not even tested.Given the ongoing maintenance and expansion of
tax
taxonomy handling code, we should switch to using it (mildly ironic, since some of the tax code was based on the LCA code, I think?)ref simplifying the way we handle identifiers, #1962
The text was updated successfully, but these errors were encountered: