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document "correct" khmer pre-processing approach for k-mer trimming #273

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ctb opened this issue Jun 4, 2017 · 3 comments
Closed

document "correct" khmer pre-processing approach for k-mer trimming #273

ctb opened this issue Jun 4, 2017 · 3 comments

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@ctb
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ctb commented Jun 4, 2017

@brooksph and I have both seen that NOT using variable coverage trimming is a mistake :)

so something like

trim-low-abund.py -V -C 3 -Z 18

but we should verify that on the podar data set.
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ctb commented Sep 28, 2017

ref #294.

@ctb ctb mentioned this issue Feb 18, 2018
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@ctb
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ctb commented Feb 26, 2018

Done in #419.

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ctb commented Mar 9, 2018

Closed by #419.

@ctb ctb closed this as completed Mar 9, 2018
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