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error in gather #442

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taylorreiter opened this issue Mar 10, 2018 · 6 comments
Closed

error in gather #442

taylorreiter opened this issue Mar 10, 2018 · 6 comments
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@taylorreiter
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I keep getting an error when I try and run sourmash gather:

Error in parsing signature; quitting.
Exception: 

Cannot open file 'fungi-k21.sbt.json'

I have tried many different sbts, and the error happens when the sbt was indexed using sourmash 2.0.0a4, but not 2.0.0a2 (installed from conda).

The sbt is there, as well as the hidden folder.

@ctb
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ctb commented Mar 10, 2018 via email

@taylorreiter
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@ctb
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ctb commented Mar 10, 2018 via email

@taylorreiter
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fungi-k21.sbt.json.txt

@ctb
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ctb commented Mar 10, 2018

Running jq . < fungi-k21.sbt.json.txt I see,

  "storage": {
    "backend": "FSStorage",
    "args": {
      "path": "/home/euk_sbts/euk_sbts/trees/fungi/.sbt.fungi-k21"
    }
  },

which makes me think that perhaps it is caused by #312. For now, you might need to rebuild the SBT in each place where you want to use it...

@taylorreiter
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Oih. Okey dokey can do thank you!

@luizirber luizirber added the sbt label Jun 7, 2018
@ctb ctb closed this as completed Dec 30, 2018
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