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Apply the contrast-agnostic segmentation model #11

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valosekj opened this issue Nov 30, 2023 · 0 comments
Open

Apply the contrast-agnostic segmentation model #11

valosekj opened this issue Nov 30, 2023 · 0 comments

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@valosekj
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valosekj commented Nov 30, 2023

The CSV files in this repository were generated based on the spinal cord segmentations obtained using sct_deepseg_sc -c t2 (QCed and corrected if necessary) using this script.

Since we now have the contrast-agnostic segmentation model (sct_deepseg -task seg_sc_contrast_agnostic), we can regenerate the segmentations (and CSV) files with a model less sensitive to a specific contrast.

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