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singularity.def
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singularity.def
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BootStrap: docker
From: ubuntu:22.04
%post
apt-get -qq update
DEBIAN_FRONTEND=noninteractive apt-get --yes --quiet --no-install-recommends install \
unzip \
xorg \
curl \
ca-certificates
mkdir /opt/mcr /opt/mcr_install
MATLAB_VERSION=R2019b
MCR_VERSION=v97
MCR_UPDATE=9
curl -fsSL --retry 5 https://ssd.mathworks.com/supportfiles/downloads/${MATLAB_VERSION}/Release/${MCR_UPDATE}/deployment_files/installer/complete/glnxa64/MATLAB_Runtime_${MATLAB_VERSION}_Update_${MCR_UPDATE}_glnxa64.zip > /opt/mcr_install/mcr.zip
unzip -q /opt/mcr_install/mcr.zip -d /opt/mcr_install
cat << EOF > /opt/mcr_install/installer_input.txt
mode silent
destinationFolder /opt/mcr
agreeToLicense yes
product.MATLAB_Runtime___Core true
product.MATLAB_Runtime___Numerics true
EOF
/opt/mcr_install/install -inputFIle /opt/mcr_install/installer_input.txt
rm -rf /opt/mcr_install
mkdir /opt/spm12
SPM_REVISION=r7771
curl -fsSL --retry 5 https://www.fil.ion.ucl.ac.uk/spm/download/restricted/utopia/spm12/spm12_${SPM_REVISION}_Linux_${MATLAB_VERSION}.zip > /opt/spm12.zip
unzip -q /opt/spm12.zip -d /opt
rm -f /opt/spm12.zip
chmod +x /opt/spm12/run_spm12.sh /opt/spm12/spm12
ln -s /opt/spm12/spm12_mcr/spm/spm12/bin/spm12-mcr /usr/local/bin/spm12
/opt/spm12/run_spm12.sh /opt/mcr/${MCR_VERSION} function exit
apt-get --yes remove unzip curl
apt-get --yes autoremove
apt-get --yes clean
%environment
export SPM_HOME=/opt/spm12
export MCR_HOME=/opt/mcr/v97
export MCR_INHIBIT_CTF_LOCK=1
export SPM_HTML_BROWSER=0
%runscript
spm12 "$@"
%labels
Author fil.spm@ucl.ac.uk
Version v1.0
%help
This is a container with SPM12 and MATLAB Runtime.