From f05e4aaf92e5a41264168ef6a3b087480fab39fb Mon Sep 17 00:00:00 2001
From: Kristoffer Andersson <kristoffer.andersson@gu.se>
Date: Mon, 2 Sep 2024 09:34:28 +0200
Subject: [PATCH 01/29] ci: add uv based workflows

---
 .github/DOCS.md                             |  32 +++
 .github/actions/setup-python-env/action.yml |  50 +++++
 .github/codecov.yml                         |  21 ++
 .github/dependabot.yml                      |  25 +++
 .github/workflows/check.yml                 | 170 +++++++++++++++
 .github/workflows/release.yml               | 158 ++++++++++++++
 .github/workflows/scheduled.yml             | 102 +++++++++
 .github/workflows/test.yml                  | 224 ++++++++++++++++++++
 8 files changed, 782 insertions(+)
 create mode 100644 .github/DOCS.md
 create mode 100644 .github/actions/setup-python-env/action.yml
 create mode 100644 .github/codecov.yml
 create mode 100644 .github/dependabot.yml
 create mode 100644 .github/workflows/check.yml
 create mode 100644 .github/workflows/release.yml
 create mode 100644 .github/workflows/scheduled.yml
 create mode 100644 .github/workflows/test.yml

diff --git a/.github/DOCS.md b/.github/DOCS.md
new file mode 100644
index 0000000..1350254
--- /dev/null
+++ b/.github/DOCS.md
@@ -0,0 +1,32 @@
+# Github config and workflows
+
+In this folder there is configuration for codecoverage, dependabot and ci workflows.
+
+This folder can be merged using a `--allow-unrelated-histories` merge strategy from <https://github.com/spraakbanken/python-uv-ci-conf> which provides a reasonably sensible base for writing your own ci on. By using this strategy the history of the CI repo is included in your repo, and future updates to the CI can be merged later.
+
+The workflows in this folder requires a root Makefile with a couple of targets defined.
+As base can the Makefile in <https://github.com/spraakbanken/python-uv-make-conf> be used.
+
+## Publish
+
+The `publish`-step in [release.yml](./workflows/release.yml) is configured to use the GitHub environment `release`, create that or change to your preferred environment.
+To publish to PyPI you must also configure your Pypi-project settings to use Trusted Publisher Management, by setting repo, workflow and environment on PyPI.
+
+To perform this merge run:
+
+```shell
+git remote add ci git@github.com:spraakbanken/python-uv-ci-conf.git
+git fetch ci
+git merge --allow-unrelated-histories ci/main
+```
+
+or add the remote as `git remote add ci https://github.com/spraakbanken/python-uv-ci-conf.git`
+
+To later merge updates to this repo, just run:
+
+```shell
+git fetch ci
+get merge ci/main
+```
+
+This setup is inspired by <https://github.com/jonhoo/rust-ci-conf>.
diff --git a/.github/actions/setup-python-env/action.yml b/.github/actions/setup-python-env/action.yml
new file mode 100644
index 0000000..2329507
--- /dev/null
+++ b/.github/actions/setup-python-env/action.yml
@@ -0,0 +1,50 @@
+name: "setup-python-env"
+description: "Composite action to setup the Python and rye environment."
+
+inputs:
+  cache-extra-key:
+    required: false
+    description: "Extra cache key to use"
+    default: ""
+  python-version:
+    required: false
+    description: "The python version to use"
+    default: "3.11"
+outputs:
+  python-version:
+    description: "Python version used"
+    value: ${{ steps.set-python-version.outputs.python-version }}
+
+runs:
+  using: "composite"
+  steps:
+    - name: Setup Python
+      id: setup-python
+      uses: actions/setup-python@v5
+      with:
+        python-version: ${{ inputs.python-version }}
+
+    - name: Output python version
+      id: set-python-version
+      run: echo "python-version=${{ steps.setup-python.outputs.python-version }}" >> $GITHUB_OUTPUT
+      shell: bash
+
+    - name: Load cached venv
+      id: cached-poetry-dependencies
+      uses: actions/cache@v3
+      with:
+        path: .venv
+        key: venv-${{ runner.os }}-${{ steps.set-python-version.outputs.python-version }}-${{ inputs.cache-extra-key }}-${{ hashFiles('**/pyproject.toml') }}
+
+    - name: Install dependencies
+      if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true'
+      run: |
+        test -d .venv || python -m venv .venv
+        pip install wheel
+        pip install -r tests/requirements-testing.txt
+        pip install -e .
+      shell: bash
+    
+    - name: list .venv
+      run: ls -R .venv
+      shell: bash
diff --git a/.github/codecov.yml b/.github/codecov.yml
new file mode 100644
index 0000000..cd5ce8f
--- /dev/null
+++ b/.github/codecov.yml
@@ -0,0 +1,21 @@
+# ref: https://docs.codecov.com/docs/codecovyml-reference
+coverage:
+  # Hold ourselves to a high bar
+  range: 85..100
+  round: down
+  precision: 1
+  status:
+    # ref: https://docs.codecov.com/docs/commit-status
+    project:
+      default:
+        # Avoid false negatives
+        threshold: 1%
+
+# Test files aren't important for coverage
+ignore:
+  - "tests"
+
+# Make comments less noisy
+comment:
+  layout: "files"
+  require_changes: true
diff --git a/.github/dependabot.yml b/.github/dependabot.yml
new file mode 100644
index 0000000..aa363d3
--- /dev/null
+++ b/.github/dependabot.yml
@@ -0,0 +1,25 @@
+# To get started with Dependabot version updates, you'll need to specify which
+# package ecosystems to update and where the package manifests are located.
+# Please see the documentation for all configuration options:
+# https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates
+
+version: 2
+updates:
+  # Maintain dependencies for GitHub Actions
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    schedule:
+      interval: "weekly"
+  - package-ecosystem: "pip" # See documentation for possible values
+    directory: "/" # Location of package manifests
+    schedule:
+      interval: "daily"
+    ignore:
+      - dependency-name: "*"
+        # patch and minor updates don't matter for libraries as consumers of this library build
+        # with their own lockfile, rather than the version specified in this library's lockfile
+        # remove this ignore rule if your package has binaries to ensure that the binaries are
+        # built with the exact set of dependencies and those are up to date.
+        update-types:
+          - "version-update:semver-patch"
+          - "version-update:semver-minor"
diff --git a/.github/workflows/check.yml b/.github/workflows/check.yml
new file mode 100644
index 0000000..431881b
--- /dev/null
+++ b/.github/workflows/check.yml
@@ -0,0 +1,170 @@
+name: check
+
+on:
+  push:
+    branches:
+      - main
+  pull_request:
+  merge_group:
+
+permissions:
+  contents: read
+
+env:
+  MINIMUM_PYTHON_VERSION: "3.8"
+  UV_VERSION: "0.3.5"
+  UV_CACHE_DIR: /tmp/.uv-cache
+
+# If new code is pushed to a PR branch, then cancel in progress workflows for that PR. Ensures that
+# we don't waste CI time, and returns results quicker https://github.com/jonhoo/rust-ci-conf/pull/5
+concurrency:
+  group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }}
+  cancel-in-progress: true
+
+jobs:
+  fmt:
+    runs-on: ubuntu-latest
+    name: ubuntu / 3.8 / fmt
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          submodules: true
+
+      - name: Set up the python ${{ env.MINIMUM_PYTHON_VERSION }}
+        uses: actions/setup-python@v5
+        id: setup-python
+        with:
+          python-version: ${{ env.MINIMUM_PYTHON_VERSION }}
+
+      #----------------------------------------------
+      #  -----  setup uv and load cache   -----
+      #----------------------------------------------
+      - name: Set up uv
+        run: curl -LsSf https://astral.sh/uv/${{ UV_VERSION }}/install.sh | sh
+
+      - name: Restore uv cache
+        uses: actions/cache@v4
+        with:
+          path: /tmp/.uv-cache
+          key: uv-${{ runner.os }}-${{ hashFiles('uv.lock') }}
+          restore-keys: |
+            uv-${{ runner.os }}-${{ hashFiles('uv.lock') }}
+            uv-${{ runner.os }}
+
+      - name: Load cached venv
+        id: cached-venv
+        uses: actions/cache@v4
+        with:
+          path: .venv
+          key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/pyproject.toml') }}-${{ hashFiles('**/uv.lock') }}-${{ hashFiles('.github/workflows/check.yml') }}
+
+      - name: Install dependencies
+        if: steps.cached-venv.outputs.cache-hit != 'true'
+        run: make install-dev
+
+      - name: check formatting
+        run: make check-fmt
+
+      - name: Minimize uv cache
+        run: uv cache prune --ci
+  lint:
+    runs-on: ubuntu-latest
+    name: ubuntu / 3.8 / lint
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          submodules: true
+      - name: Set up the python ${{ env.MINIMUM_PYTHON_VERSION }}
+        uses: actions/setup-python@v5
+        id: setup-python
+        with:
+          python-version: ${{ env.MINIMUM_PYTHON_VERSION }}
+
+      #----------------------------------------------
+      #  -----  setup uv and load cache   -----
+      #----------------------------------------------
+      - name: Set up uv
+        run: curl -LsSf https://astral.sh/uv/${{ UV_VERSION }}/install.sh | sh
+
+      - name: Restore uv cache
+        uses: actions/cache@v4
+        with:
+          path: /tmp/.uv-cache
+          key: uv-${{ runner.os }}-${{ hashFiles('uv.lock') }}
+          restore-keys: |
+            uv-${{ runner.os }}-${{ hashFiles('uv.lock') }}
+            uv-${{ runner.os }}
+
+      - name: Load cached venv
+        id: cached-venv
+        uses: actions/cache@v4
+        with:
+          path: .venv
+          key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/pyproject.toml') }}-${{ hashFiles('**/uv.lock') }}-${{ hashFiles('.github/workflows/check.yml') }}
+      - name: Install dependencies
+        if: steps.cached-venv.outputs.cache-hit != 'true'
+        run: make install-dev
+      - name: lint code
+        run: make lint
+
+      - name: Minimize uv cache
+        run: uv cache prune --ci
+
+  type-check:
+    runs-on: ubuntu-latest
+    name: ubuntu / 3.8 / type-check
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          submodules: true
+      - name: Set up the python ${{ env.MINIMUM_PYTHON_VERSION }}
+        uses: actions/setup-python@v5
+        id: setup-python
+        with:
+          python-version: ${{ env.MINIMUM_PYTHON_VERSION }}
+
+      #----------------------------------------------
+      #  -----  setup uv and load cache   -----
+      #----------------------------------------------
+      - name: Set up uv
+        run: curl -LsSf https://astral.sh/uv/${{ UV_VERSION }}/install.sh | sh
+
+      - name: Restore uv cache
+        uses: actions/cache@v4
+        with:
+          path: /tmp/.uv-cache
+          key: uv-${{ runner.os }}-${{ hashFiles('uv.lock') }}
+          restore-keys: |
+            uv-${{ runner.os }}-${{ hashFiles('uv.lock') }}
+            uv-${{ runner.os }}
+
+      - name: Load cached venv
+        id: cached-venv
+        uses: actions/cache@v4
+        with:
+          path: .venv
+          key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/pyproject.toml') }}-${{ hashFiles('**/uv.lock') }}-${{ hashFiles('.github/workflows/check.yml') }}
+      - name: Install dependencies
+        if: steps.cached-venv.outputs.cache-hit != 'true'
+        run: make install-dev
+      - name: type-check code
+        run: make type-check
+
+      - name: Minimize uv cache
+        run: uv cache prune --ci
+
+  # https://github.com/marketplace/actions/alls-green#why used for branch protection checks
+  check-check:
+    if: always()
+    needs:
+      - fmt
+      - lint
+      - type-check
+    runs-on: ubuntu-latest
+    permissions: {}
+    steps:
+      - name: Decide whether the needed jobs succeeded or failed
+        uses: re-actors/alls-green@release/v1
+        with:
+          jobs: ${{ toJSON(needs) }}
+          allowed-failures: upload-coverage
diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml
new file mode 100644
index 0000000..11293a5
--- /dev/null
+++ b/.github/workflows/release.yml
@@ -0,0 +1,158 @@
+name: release
+
+on:
+  push:
+    branches:
+      - main
+    tags:
+      - "v[0-9]+.[0-9]+.[0-9]+"
+  pull_request:
+  merge_group:
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }}
+  cancel-in-progress: true
+permissions:
+  contents: read
+
+env:
+  MINIMUM_PYTHON_VERSION: "3.8"
+  UV_VERSION: "0.3.5"
+  UV_CACHE_DIR: /tmp/.uv-cache
+
+jobs:
+  build:
+    # This action builds distribution files for upload to PyPI
+
+    name: ubuntu / 3.8 / build
+    runs-on: ubuntu-latest
+    steps:
+      #----------------------------------------------
+      #       check-out repo and set-up python
+      #----------------------------------------------
+      - name: Check out repository
+        uses: actions/checkout@v4
+        with:
+          submodules: true
+
+      #----------------------------------------------
+      #  -----  setup python   -----
+      #----------------------------------------------
+      - name: Set up the environment
+        uses: actions/setup-python@v5
+        id: setup-python
+        with:
+          python-version: ${{ env.MINIMUM_PYTHON_VERSION }}
+
+      #----------------------------------------------
+      #  -----  setup uv and load cache   -----
+      #----------------------------------------------
+      - name: Set up uv
+        run: curl -LsSf https://astral.sh/uv/${{ UV_VERSION }}/install.sh | sh
+
+      - name: Restore uv cache
+        uses: actions/cache@v4
+        with:
+          path: /tmp/.uv-cache
+          key: uv-${{ runner.os }}-${{ hashFiles('uv.lock') }}
+          restore-keys: |
+            uv-${{ runner.os }}-${{ hashFiles('uv.lock') }}
+            uv-${{ runner.os }}
+
+      #----------------------------------------------
+      #  -----  build distribution -----
+      #----------------------------------------------
+      - name: Build distribution
+        run: make build
+
+      #----------------------------------------------
+      #  -----  upload artifacts  -----
+      #----------------------------------------------
+      - uses: actions/upload-artifact@v4
+        with:
+          name: pypi_files
+          path: dist
+
+      - name: Minimize uv cache
+        run: uv cache prune --ci
+
+  test-build:
+    # This action runs the test suite on the built artifact in the `build` action.
+    # The default is to run this in ubuntu, macos and windows
+
+    name: ${{ matrix.os }} / 3.8 / test built artifact
+    needs: [build]
+
+    strategy:
+      fail-fast: false
+      matrix:
+        os:
+          - ubuntu
+          - macos
+          - windows
+
+    runs-on: ${{ matrix.os }}-latest
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          submodules: true
+
+      - name: set up python
+        uses: actions/setup-python@v5
+        with:
+          python-version: ${{ env.MINIMUM_PYTHON_VERSION }}
+
+      - name: get dist artifacts
+        uses: actions/download-artifact@v4
+        with:
+          name: pypi_files
+          path: dist
+
+      - run: rm -r <INSERT PROJECT SRC>
+      - run: pip install typing-extensions
+      - run: pip install -r tests/requirements-testing.lock
+      - run: pip install <INSERT PROJECT NAME> --no-index --no-deps --find-links dist --force-reinstall
+      - run: pytest
+
+  # https://github.com/marketplace/actions/alls-green#why used for branch protection checks
+  release-check:
+    if: always()
+    needs:
+      - build
+      - test-build
+    runs-on: ubuntu-latest
+    permissions: {}
+    steps:
+      - name: Decide whether the needed jobs succeeded or failed
+        uses: re-actors/alls-green@release/v1
+        with:
+          jobs: ${{ toJSON(needs) }}
+          # allowed-failures: coverage
+
+  publish:
+    # This action publishes the built and tested artifact to PyPI, but only on a tag
+
+    needs:
+      - test-build
+    if: success() && startsWith(github.ref, 'refs/tags/v')
+    runs-on: ubuntu-latest
+    environment: release
+    permissions:
+      # IMPORTANT: this permission is mandatory for trusted publishing
+      id-token: write
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+      - name: Set up Python ${{ env.MINIMUM_PYTHON_VERSION }}
+        uses: actions/setup-python@v5
+        with:
+          python-version: ${{ env.MINIMUM_PYTHON_VERSION }}
+      - name: get dist artifacts
+        uses: actions/download-artifact@v4
+        with:
+          name: pypi_files
+          path: dist
+
+      - name: Publish package to PyPI
+        uses: pypa/gh-action-pypi-publish@release/v1
diff --git a/.github/workflows/scheduled.yml b/.github/workflows/scheduled.yml
new file mode 100644
index 0000000..669634d
--- /dev/null
+++ b/.github/workflows/scheduled.yml
@@ -0,0 +1,102 @@
+# Run scheduled (rolling) jobs on a nightly basis, as your crate may break independently of any
+# given PR. E.g., updates to rust nightly and updates to this crates dependencies. See check.yml for
+# information about how the concurrency cancellation and workflow triggering works
+permissions:
+  contents: read
+
+on:
+  push:
+    branches: [main]
+  pull_request:
+  schedule:
+    - cron: "7 7 * * *"
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }}
+  cancel-in-progress: true
+
+name: rolling
+
+env:
+  MINIMUM_PYTHON_VERSION: "3.8"
+  UV_VERSION: "0.3.5"
+  UV_CACHE_DIR: /tmp/.uv-cache
+
+jobs:
+  # https://twitter.com/mycoliza/status/1571295690063753218
+  nightly:
+    runs-on: ubuntu-latest
+    name: ubuntu / 3.13-dev
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          submodules: true
+      - name: Set up uv
+        run: curl -LsSf https://astral.sh/uv/${{ UV_VERSION }}/install.sh | sh
+      - name: Install python
+        uses: actions/setup-python@v5
+        with:
+          python-version: "3.13-dev"
+      - name: Restore uv cache
+        uses: actions/cache@v4
+        with:
+          path: /tmp/.uv-cache
+          key: uv-${{ runner.os }}-${{ hashFiles('uv.lock') }}
+          restore-keys: |
+            uv-${{ runner.os }}-${{ hashFiles('uv.lock') }}
+            uv-${{ runner.os }}
+      - run: python --version
+      - name: uv lock
+        if: hashFiles('uv.lock') == ''
+        run: uv lock
+      - name: uv sync --dev
+        run: uv sync --dev
+      - name: make test
+        run: make test
+
+      - name: Minimize uv cache
+        run: uv cache prune --ci
+  # https://twitter.com/alcuadrado/status/1571291687837732873
+  update:
+    # This action checks that updating the dependencies of this crate to the latest available that
+    # satisfy the versions in Cargo.toml does not break this crate. This is important as consumers
+    # of this crate will generally use the latest available crates. This is subject to the standard
+    # Cargo semver rules (i.e cargo does not update to a new major version unless explicitly told
+    # to).
+    runs-on: ubuntu-latest
+    name: ubuntu / 3.12 / updates work
+    # There's no point running this if no Cargo.lock was checked in in the first place, since we'd
+    # just redo what happened in the regular test job. Unfortunately, hashFiles only works in if on
+    # steps, so we repeat it.
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          submodules: true
+      - name: Set up uv
+        if: hashFiles('uv.lock') != ''
+        run: curl -LsSf https://astral.sh/uv/${{ UV_VERSION }}/install.sh | sh
+      - name: Install 3.12
+        if: hashFiles('uv.lock') != ''
+        uses: actions/setup-python@v5
+        with:
+          python-version: "3.12"
+
+      - name: Restore uv cache
+        uses: actions/cache@v4
+        with:
+          path: /tmp/.uv-cache
+          key: uv-${{ runner.os }}-${{ hashFiles('uv.lock') }}
+          restore-keys: |
+            uv-${{ runner.os }}-${{ hashFiles('uv.lock') }}
+            uv-${{ runner.os }}
+
+      - name: uv sync --dev --upgrade
+        if: hashFiles('uv.lock') != ''
+        run: uv sync --dev --upgrade
+      - name: make test
+        if: hashFiles('uv.lock') != ''
+        run: make test
+
+      - name: Minimize uv cache
+        if: hashFiles('uv.lock') != ''
+        run: uv cache prune --ci
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
new file mode 100644
index 0000000..6ca58dd
--- /dev/null
+++ b/.github/workflows/test.yml
@@ -0,0 +1,224 @@
+name: test
+
+on:
+  push:
+    branches:
+      - main
+  pull_request:
+  merge_group:
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }}
+  cancel-in-progress: true
+
+permissions:
+  contents: read
+
+env:
+  MINIMUM_PYTHON_VERSION: "3.8"
+  UV_VERSION: "0.3.5"
+  UV_CACHE_DIR: /tmp/.uv-cache
+
+jobs:
+  coverage:
+    # This action runs tests for coverage collection and uploads them to codecov.io.
+    # This requires the secret `CODECOV_TOKEN` be set as secret on GitHub, both for
+    # Actions and Dependabot
+
+    name: "${{ matrix.os }} / ${{ matrix.python-version }} / coverage"
+    strategy:
+      max-parallel: 4
+      fail-fast: false
+      matrix:
+        os: [ubuntu]
+        python-version:
+          # remove the unused versions
+          - "3.8"
+          - "3.9"
+          - "3.10"
+          - "3.11"
+          - "3.12"
+
+    runs-on: ${{ matrix.os }}-latest
+    env:
+      OS: ${{ matrix.os }}-latest
+      PYTHON: ${{ matrix.python-version }}
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          submodules: true
+
+      - name: Set up uv
+        run: curl -LsSf https://astral.sh/uv/${{ UV_VERSION }}/install.sh | sh
+
+      - name: Set up Python ${{ matrix.python-version }}
+        id: setup-python
+        uses: actions/setup-python@v5
+        with:
+          python-version: ${{ matrix.python-version }}
+
+      - name: Restore uv cache
+        uses: actions/cache@v4
+        with:
+          path: /tmp/.uv-cache
+          key: uv-${{ runner.os }}-${{ hashFiles('uv.lock') }}
+          restore-keys: |
+            uv-${{ runner.os }}-${{ hashFiles('uv.lock') }}
+            uv-${{ runner.os }}
+
+      - name: Load cached venv
+        id: cached-venv
+        uses: actions/cache@v4
+        with:
+          path: .venv
+          key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/pyproject.toml') }}-${{ hashFiles('**/uv.lock') }}-${{ hashFiles('.github/workflows/test.yml') }}
+
+      - name: Install dependencies
+        if: steps.cached-venv.outputs.cache-hit != 'true'
+        run: uv sync --all-extras --dev
+
+      - name: Run tests for coverage
+        run: make test-w-coverage cov_report=xml
+
+      - name: Minimize uv cache
+        run: uv cache prune --ci
+
+      - name: Upload coverage to Codecov
+        uses: codecov/codecov-action@v4
+        with:
+          token: ${{ secrets.CODECOV_TOKEN }}
+          # directory: ./coverage
+          env_vars: OS,PYTHON
+          fail_ci_if_error: true
+          # files: ./coverage/coverage.xml
+          # flags: unittests
+          # name: codecov-umbrella
+          verbose: true
+
+  doctests:
+    # This action runs doctests for coverage collection and uploads them to codecov.io.
+    # This requires the secret `CODECOV_TOKEN` be set as secret on GitHub, both for
+    # Actions and Dependabot
+
+    name: "${{ matrix.os }} / 3.8 / doctest"
+    strategy:
+      max-parallel: 4
+      fail-fast: false
+      matrix:
+        os: [ubuntu]
+
+    runs-on: ${{ matrix.os }}-latest
+    env:
+      OS: ${{ matrix.os }}-latest
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          submodules: true
+
+      - name: Set up uv
+        run: curl -LsSf https://astral.sh/uv/${{ UV_VERSION }}/install.sh | sh
+
+      - name: Set up Python ${{ matrix.python-version }}
+        id: setup-python
+        uses: actions/setup-python@v5
+        with:
+          python-version: ${{ matrix.python-version }}
+
+      - name: Restore uv cache
+        uses: actions/cache@v4
+        with:
+          path: /tmp/.uv-cache
+          key: uv-${{ runner.os }}-${{ hashFiles('uv.lock') }}
+          restore-keys: |
+            uv-${{ runner.os }}-${{ hashFiles('uv.lock') }}
+            uv-${{ runner.os }}
+
+      - name: Load cached venv
+        id: cached-venv
+        uses: actions/cache@v4
+        with:
+          path: .venv
+          key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/pyproject.toml') }}-${{ hashFiles('**/uv.lock') }}-${{ hashFiles('.github/workflows/test.yml') }}
+
+      - name: Install dependencies
+        if: steps.cached-venv.outputs.cache-hit != 'true'
+        run: uv sync --all-extras --dev
+      #----------------------------------------------
+      # Run tests and upload coverage
+      #----------------------------------------------
+      - name: make doc-tests
+        run: make doc-tests cov_report=xml
+
+      - name: Minimize uv cache
+        run: uv cache prune --ci
+
+      - name: Upload coverage to Codecov
+        uses: codecov/codecov-action@v4
+        with:
+          token: ${{ secrets.CODECOV_TOKEN }}
+          # directory: ./coverage
+          env_vars: OS,PYTHON,TESTTYPE
+          fail_ci_if_error: true
+          # files: ./coverage/coverage.xml
+          # flags: unittests
+          # name: codecov-umbrella
+          verbose: true
+        env:
+          PYTHON: ${{ env.MINIMUM_PYTHON_VERSION }}
+          TESTTYPE: doctest
+
+  minimal:
+    # This action chooses the oldest version of the dependencies permitted by Cargo.toml to ensure
+    # that this crate is compatible with the minimal version that this crate and its dependencies
+    # require. This will pickup issues where this create relies on functionality that was introduced
+    # later than the actual version specified (e.g., when we choose just a major version, but a
+    # method was added after this version).
+    #
+
+    runs-on: ubuntu-latest
+    name: ubuntu / 3.8 / minimal-versions
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          submodules: true
+      - name: Set up uv
+        run: curl -LsSf https://astral.sh/uv/${{ UV_VERSION }}/install.sh | sh
+
+      - name: Set up Python ${{ matrix.python-version }}
+        id: setup-python
+        uses: actions/setup-python@v5
+        with:
+          python-version: ${{ matrix.python-version }}
+
+      - name: Restore uv cache
+        uses: actions/cache@v4
+        with:
+          path: /tmp/.uv-cache
+          key: uv-${{ runner.os }}-${{ hashFiles('uv.lock') }}
+          restore-keys: |
+            uv-${{ runner.os }}-${{ hashFiles('uv.lock') }}
+            uv-${{ runner.os }}
+
+      - name: install lowest direct dependencies
+        run: uv sync --resolution lowest-direct --all-extras --dev
+
+      - name: make test
+        run: make test
+
+      - name: Minimize uv cache
+        run: uv cache prune --ci
+
+  # https://github.com/marketplace/actions/alls-green#why used for branch protection checks
+  test-check:
+    if: always()
+    needs:
+      - coverage
+      - doctests
+      - minimal
+    runs-on: ubuntu-latest
+    permissions: {}
+    steps:
+      - name: Decide whether the needed jobs succeeded or failed
+        uses: re-actors/alls-green@release/v1
+        with:
+          jobs: ${{ toJSON(needs) }}

From 1704d8925838d8f07628664f3585ca3b9d25abcc Mon Sep 17 00:00:00 2001
From: Kristoffer Andersson <kristoffer.andersson@gu.se>
Date: Mon, 2 Sep 2024 09:44:18 +0200
Subject: [PATCH 02/29] ci: use env namespace

---
 .github/workflows/check.yml     | 6 +++---
 .github/workflows/release.yml   | 2 +-
 .github/workflows/scheduled.yml | 4 ++--
 .github/workflows/test.yml      | 6 +++---
 4 files changed, 9 insertions(+), 9 deletions(-)

diff --git a/.github/workflows/check.yml b/.github/workflows/check.yml
index 431881b..8e6109e 100644
--- a/.github/workflows/check.yml
+++ b/.github/workflows/check.yml
@@ -40,7 +40,7 @@ jobs:
       #  -----  setup uv and load cache   -----
       #----------------------------------------------
       - name: Set up uv
-        run: curl -LsSf https://astral.sh/uv/${{ UV_VERSION }}/install.sh | sh
+        run: curl -LsSf https://astral.sh/uv/${{ env.UV_VERSION }}/install.sh | sh
 
       - name: Restore uv cache
         uses: actions/cache@v4
@@ -84,7 +84,7 @@ jobs:
       #  -----  setup uv and load cache   -----
       #----------------------------------------------
       - name: Set up uv
-        run: curl -LsSf https://astral.sh/uv/${{ UV_VERSION }}/install.sh | sh
+        run: curl -LsSf https://astral.sh/uv/${{ env.UV_VERSION }}/install.sh | sh
 
       - name: Restore uv cache
         uses: actions/cache@v4
@@ -127,7 +127,7 @@ jobs:
       #  -----  setup uv and load cache   -----
       #----------------------------------------------
       - name: Set up uv
-        run: curl -LsSf https://astral.sh/uv/${{ UV_VERSION }}/install.sh | sh
+        run: curl -LsSf https://astral.sh/uv/${{ env.UV_VERSION }}/install.sh | sh
 
       - name: Restore uv cache
         uses: actions/cache@v4
diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml
index 11293a5..6fbc15b 100644
--- a/.github/workflows/release.yml
+++ b/.github/workflows/release.yml
@@ -48,7 +48,7 @@ jobs:
       #  -----  setup uv and load cache   -----
       #----------------------------------------------
       - name: Set up uv
-        run: curl -LsSf https://astral.sh/uv/${{ UV_VERSION }}/install.sh | sh
+        run: curl -LsSf https://astral.sh/uv/${{ env.UV_VERSION }}/install.sh | sh
 
       - name: Restore uv cache
         uses: actions/cache@v4
diff --git a/.github/workflows/scheduled.yml b/.github/workflows/scheduled.yml
index 669634d..a928820 100644
--- a/.github/workflows/scheduled.yml
+++ b/.github/workflows/scheduled.yml
@@ -32,7 +32,7 @@ jobs:
         with:
           submodules: true
       - name: Set up uv
-        run: curl -LsSf https://astral.sh/uv/${{ UV_VERSION }}/install.sh | sh
+        run: curl -LsSf https://astral.sh/uv/${{ env.UV_VERSION }}/install.sh | sh
       - name: Install python
         uses: actions/setup-python@v5
         with:
@@ -74,7 +74,7 @@ jobs:
           submodules: true
       - name: Set up uv
         if: hashFiles('uv.lock') != ''
-        run: curl -LsSf https://astral.sh/uv/${{ UV_VERSION }}/install.sh | sh
+        run: curl -LsSf https://astral.sh/uv/${{ env.UV_VERSION }}/install.sh | sh
       - name: Install 3.12
         if: hashFiles('uv.lock') != ''
         uses: actions/setup-python@v5
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
index 6ca58dd..a07a390 100644
--- a/.github/workflows/test.yml
+++ b/.github/workflows/test.yml
@@ -49,7 +49,7 @@ jobs:
           submodules: true
 
       - name: Set up uv
-        run: curl -LsSf https://astral.sh/uv/${{ UV_VERSION }}/install.sh | sh
+        run: curl -LsSf https://astral.sh/uv/${{ env.UV_VERSION }}/install.sh | sh
 
       - name: Set up Python ${{ matrix.python-version }}
         id: setup-python
@@ -116,7 +116,7 @@ jobs:
           submodules: true
 
       - name: Set up uv
-        run: curl -LsSf https://astral.sh/uv/${{ UV_VERSION }}/install.sh | sh
+        run: curl -LsSf https://astral.sh/uv/${{ env.UV_VERSION }}/install.sh | sh
 
       - name: Set up Python ${{ matrix.python-version }}
         id: setup-python
@@ -182,7 +182,7 @@ jobs:
         with:
           submodules: true
       - name: Set up uv
-        run: curl -LsSf https://astral.sh/uv/${{ UV_VERSION }}/install.sh | sh
+        run: curl -LsSf https://astral.sh/uv/${{ env.UV_VERSION }}/install.sh | sh
 
       - name: Set up Python ${{ matrix.python-version }}
         id: setup-python

From 6ad6e5d22eea441d00bad4bb6d75d0723554c9fd Mon Sep 17 00:00:00 2001
From: Kristoffer Andersson <kristoffer.andersson@gu.se>
Date: Mon, 2 Sep 2024 10:31:40 +0200
Subject: [PATCH 03/29] chore: add uv based Makefile

---
 Makefile | 168 +++++++++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 168 insertions(+)
 create mode 100644 Makefile

diff --git a/Makefile b/Makefile
new file mode 100644
index 0000000..d944107
--- /dev/null
+++ b/Makefile
@@ -0,0 +1,168 @@
+
+# use this Makefile as base in your project by running
+# git remote add make https://github.com/spraakbanken/python-uv-make-conf
+# git fetch make
+# git merge --allow-unrelated-histories make/main
+#
+# To later update this makefile:
+# git fetch make
+# git merge make/main
+#
+.default: help
+
+.PHONY: help
+help:
+	@echo "usage:"
+	@echo "dev | install-dev"
+	@echo "   setup development environment"
+	@echo "install"
+	@echo "   setup production environment"
+	@echo ""
+	@echo "info"
+	@echo "   print info about the system and project"
+	@echo ""
+	@echo "test"
+	@echo "   run all tests"
+	@echo ""
+	@echo "test-w-coverage [cov=] [cov_report=]"
+	@echo "   run all tests with coverage collection. (Default: cov_report='term-missing', cov='--cov=${PROJECT_SRC}')"
+	@echo ""
+	@echo "lint"
+	@echo "   lint the code"
+	@echo ""
+	@echo "lint-fix"
+	@echo "   lint the code and try to fix it"
+	@echo ""
+	@echo "type-check"
+	@echo "   check types"
+	@echo ""
+	@echo "fmt"
+	@echo "   format the code"
+	@echo ""
+	@echo "check-fmt"
+	@echo "   check that the code is formatted"
+	@echo ""
+	@echo "bumpversion [part=]"
+	@echo "   bumps the given part of the version of the project. (Default: part='patch')"
+	@echo ""
+	@echo "bumpversion-show"
+	@echo "   shows the bump path that is possible"
+	@echo ""
+	@echo "publish [branch=]"
+	@echo "   pushes the given branch including tags to origin, for CI to publish based on tags. (Default: branch='main')"
+	@echo "   Typically used after 'make bumpversion'"
+	@echo ""
+	@echo "prepare-release"
+	@echo "   run tasks to prepare a release"
+	@echo ""
+
+PLATFORM := `uname -o`
+REPO := "<REPO-NAME-HERE>"
+PROJECT_SRC := "<SRC-FOLDER-HERE>"
+
+ifeq (${VIRTUAL_ENV},)
+  VENV_NAME = .venv
+  INVENV = uv run
+else
+  VENV_NAME = ${VIRTUAL_ENV}
+  INVENV =
+endif
+
+default_cov := "--cov=${PROJECT_SRC}"
+cov_report := "term-missing"
+cov := ${default_cov}
+
+all_tests := tests
+tests := tests
+
+info:
+	@echo "Platform: ${PLATFORM}"
+	@echo "INVENV: '${INVENV}'"
+
+dev: install-dev
+
+# setup development environment
+install-dev:
+	uv sync --dev
+
+# setup production environment
+install:
+	uv sync --no-dev
+
+lock: uv.lock
+
+uv.lock: pyproject.toml
+	uv lock
+
+.PHONY: test
+test:
+	${INVENV} pytest -vv ${tests}
+
+.PHONY: test-w-coverage
+# run all tests with coverage collection
+test-w-coverage:
+	${INVENV} pytest -vv ${cov}  --cov-report=${cov_report} ${all_tests}
+
+.PHONY: doc-tests
+doc-tests:
+	${INVENV} pytest ${cov} --cov-report=${cov_report} --doctest-modules ${PROJECT_SRC}
+
+.PHONY: type-check
+# check types
+type-check:
+	${INVENV} mypy ${PROJECT_SRC} ${tests}
+
+.PHONY: lint
+# lint the code
+lint:
+	${INVENV} ruff check ${PROJECT_SRC} ${tests}
+
+.PHONY: lint-fix
+# lint the code (and fix if possible)
+lint-fix:
+	${INVENV} ruff check --fix ${PROJECT_SRC} ${tests}
+
+part := "patch"
+bumpversion:
+	${INVENV} bump-my-version bump ${part}
+
+bumpversion-show:
+	${INVENV} bump-my-version show-bump
+
+# run formatter(s)
+fmt:
+	${INVENV} ruff format ${PROJECT_SRC} ${tests}
+
+.PHONY: check-fmt
+# check formatting
+check-fmt:
+	${INVENV} ruff format --check ${PROJECT_SRC} ${tests}
+
+build:
+	uvx --from build pyproject-build --installer uv
+
+branch := "main"
+publish:
+	git push -u origin ${branch} --tags
+
+
+.PHONY: prepare-release
+prepare-release: update-changelog tests/requirements-testing.lock
+
+# we use lock extension so that dependabot doesn't pick up changes in this file
+tests/requirements-testing.lock: pyproject.toml
+	uv pip compile $< --output-file $@
+
+.PHONY: update-changelog
+update-changelog: CHANGELOG.md
+
+.PHONY: CHANGELOG.md
+CHANGELOG.md:
+	git cliff --unreleased --prepend $@
+
+# update snapshots for `syrupy`
+.PHONY: snapshot-update
+snapshot-update:
+	${INVENV} pytest --snapshot-update
+
+### === project targets below this line ===

From 0a9d5c1d44c524814ca152509e872393cc6042d3 Mon Sep 17 00:00:00 2001
From: Kristoffer Andersson <kristoffer.andersson@gu.se>
Date: Mon, 2 Sep 2024 16:37:26 +0200
Subject: [PATCH 04/29] ci: remove unused actions

---
 .github/actions/setup-python-env/action.yml | 50 ---------------------
 1 file changed, 50 deletions(-)
 delete mode 100644 .github/actions/setup-python-env/action.yml

diff --git a/.github/actions/setup-python-env/action.yml b/.github/actions/setup-python-env/action.yml
deleted file mode 100644
index 2329507..0000000
--- a/.github/actions/setup-python-env/action.yml
+++ /dev/null
@@ -1,50 +0,0 @@
-name: "setup-python-env"
-description: "Composite action to setup the Python and rye environment."
-
-inputs:
-  cache-extra-key:
-    required: false
-    description: "Extra cache key to use"
-    default: ""
-  python-version:
-    required: false
-    description: "The python version to use"
-    default: "3.11"
-outputs:
-  python-version:
-    description: "Python version used"
-    value: ${{ steps.set-python-version.outputs.python-version }}
-
-runs:
-  using: "composite"
-  steps:
-    - name: Setup Python
-      id: setup-python
-      uses: actions/setup-python@v5
-      with:
-        python-version: ${{ inputs.python-version }}
-
-    - name: Output python version
-      id: set-python-version
-      run: echo "python-version=${{ steps.setup-python.outputs.python-version }}" >> $GITHUB_OUTPUT
-      shell: bash
-
-    - name: Load cached venv
-      id: cached-poetry-dependencies
-      uses: actions/cache@v3
-      with:
-        path: .venv
-        key: venv-${{ runner.os }}-${{ steps.set-python-version.outputs.python-version }}-${{ inputs.cache-extra-key }}-${{ hashFiles('**/pyproject.toml') }}
-
-    - name: Install dependencies
-      if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true'
-      run: |
-        test -d .venv || python -m venv .venv
-        pip install wheel
-        pip install -r tests/requirements-testing.txt
-        pip install -e .
-      shell: bash
-    
-    - name: list .venv
-      run: ls -R .venv
-      shell: bash

From 15b3c7deb955d294c3bccaf8e953cc71304ddeef Mon Sep 17 00:00:00 2001
From: Kristoffer Andersson <kristoffer.andersson@gu.se>
Date: Mon, 16 Sep 2024 11:44:09 +0200
Subject: [PATCH 05/29] ci(test): fix python-version

---
 .github/workflows/test.yml | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
index a07a390..99f673c 100644
--- a/.github/workflows/test.yml
+++ b/.github/workflows/test.yml
@@ -118,11 +118,11 @@ jobs:
       - name: Set up uv
         run: curl -LsSf https://astral.sh/uv/${{ env.UV_VERSION }}/install.sh | sh
 
-      - name: Set up Python ${{ matrix.python-version }}
+      - name: Set up Python ${{ env.MINIMUM_PYTHON_VERSION }}
         id: setup-python
         uses: actions/setup-python@v5
         with:
-          python-version: ${{ matrix.python-version }}
+          python-version: ${{ env.MINIMUM_PYTHON_VERSION }}
 
       - name: Restore uv cache
         uses: actions/cache@v4
@@ -184,11 +184,11 @@ jobs:
       - name: Set up uv
         run: curl -LsSf https://astral.sh/uv/${{ env.UV_VERSION }}/install.sh | sh
 
-      - name: Set up Python ${{ matrix.python-version }}
+      - name: Set up Python ${{ env.MINIMUM_PYTHON_VERSION }}
         id: setup-python
         uses: actions/setup-python@v5
         with:
-          python-version: ${{ matrix.python-version }}
+          python-version: ${{ env.MINIMUM_PYTHON_VERSION }}
 
       - name: Restore uv cache
         uses: actions/cache@v4

From cb56a6c737bc87752733c51d8cac237e9bf1fd02 Mon Sep 17 00:00:00 2001
From: Kristoffer Andersson <kristoffer.andersson@gu.se>
Date: Fri, 4 Oct 2024 09:46:26 +0200
Subject: [PATCH 06/29] ci: bump uv to 0.4.18

---
 .github/workflows/check.yml     | 2 +-
 .github/workflows/release.yml   | 2 +-
 .github/workflows/scheduled.yml | 2 +-
 .github/workflows/test.yml      | 2 +-
 4 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/check.yml b/.github/workflows/check.yml
index 8e6109e..4d0b613 100644
--- a/.github/workflows/check.yml
+++ b/.github/workflows/check.yml
@@ -12,7 +12,7 @@ permissions:
 
 env:
   MINIMUM_PYTHON_VERSION: "3.8"
-  UV_VERSION: "0.3.5"
+  UV_VERSION: "0.4.18"
   UV_CACHE_DIR: /tmp/.uv-cache
 
 # If new code is pushed to a PR branch, then cancel in progress workflows for that PR. Ensures that
diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml
index 6fbc15b..4d3b95f 100644
--- a/.github/workflows/release.yml
+++ b/.github/workflows/release.yml
@@ -17,7 +17,7 @@ permissions:
 
 env:
   MINIMUM_PYTHON_VERSION: "3.8"
-  UV_VERSION: "0.3.5"
+  UV_VERSION: "0.4.18"
   UV_CACHE_DIR: /tmp/.uv-cache
 
 jobs:
diff --git a/.github/workflows/scheduled.yml b/.github/workflows/scheduled.yml
index a928820..369dd87 100644
--- a/.github/workflows/scheduled.yml
+++ b/.github/workflows/scheduled.yml
@@ -19,7 +19,7 @@ name: rolling
 
 env:
   MINIMUM_PYTHON_VERSION: "3.8"
-  UV_VERSION: "0.3.5"
+  UV_VERSION: "0.4.18"
   UV_CACHE_DIR: /tmp/.uv-cache
 
 jobs:
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
index 99f673c..36d5c87 100644
--- a/.github/workflows/test.yml
+++ b/.github/workflows/test.yml
@@ -16,7 +16,7 @@ permissions:
 
 env:
   MINIMUM_PYTHON_VERSION: "3.8"
-  UV_VERSION: "0.3.5"
+  UV_VERSION: "0.4.18"
   UV_CACHE_DIR: /tmp/.uv-cache
 
 jobs:

From 2b55d174486c124f502929abf4fd4dbc442c0914 Mon Sep 17 00:00:00 2001
From: Kristoffer Andersson <kristoffer.andersson@gu.se>
Date: Fri, 4 Oct 2024 09:48:57 +0200
Subject: [PATCH 07/29] ci: do not use hashes from workflow file

---
 .github/workflows/check.yml | 6 +++---
 .github/workflows/test.yml  | 4 ++--
 2 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/.github/workflows/check.yml b/.github/workflows/check.yml
index 4d0b613..0e3824e 100644
--- a/.github/workflows/check.yml
+++ b/.github/workflows/check.yml
@@ -56,7 +56,7 @@ jobs:
         uses: actions/cache@v4
         with:
           path: .venv
-          key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/pyproject.toml') }}-${{ hashFiles('**/uv.lock') }}-${{ hashFiles('.github/workflows/check.yml') }}
+          key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/pyproject.toml') }}-${{ hashFiles('**/uv.lock') }}
 
       - name: Install dependencies
         if: steps.cached-venv.outputs.cache-hit != 'true'
@@ -100,7 +100,7 @@ jobs:
         uses: actions/cache@v4
         with:
           path: .venv
-          key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/pyproject.toml') }}-${{ hashFiles('**/uv.lock') }}-${{ hashFiles('.github/workflows/check.yml') }}
+          key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/pyproject.toml') }}-${{ hashFiles('**/uv.lock') }}
       - name: Install dependencies
         if: steps.cached-venv.outputs.cache-hit != 'true'
         run: make install-dev
@@ -143,7 +143,7 @@ jobs:
         uses: actions/cache@v4
         with:
           path: .venv
-          key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/pyproject.toml') }}-${{ hashFiles('**/uv.lock') }}-${{ hashFiles('.github/workflows/check.yml') }}
+          key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/pyproject.toml') }}-${{ hashFiles('**/uv.lock') }}
       - name: Install dependencies
         if: steps.cached-venv.outputs.cache-hit != 'true'
         run: make install-dev
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
index 36d5c87..062706b 100644
--- a/.github/workflows/test.yml
+++ b/.github/workflows/test.yml
@@ -71,7 +71,7 @@ jobs:
         uses: actions/cache@v4
         with:
           path: .venv
-          key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/pyproject.toml') }}-${{ hashFiles('**/uv.lock') }}-${{ hashFiles('.github/workflows/test.yml') }}
+          key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/pyproject.toml') }}-${{ hashFiles('**/uv.lock') }}
 
       - name: Install dependencies
         if: steps.cached-venv.outputs.cache-hit != 'true'
@@ -138,7 +138,7 @@ jobs:
         uses: actions/cache@v4
         with:
           path: .venv
-          key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/pyproject.toml') }}-${{ hashFiles('**/uv.lock') }}-${{ hashFiles('.github/workflows/test.yml') }}
+          key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/pyproject.toml') }}-${{ hashFiles('**/uv.lock') }}
 
       - name: Install dependencies
         if: steps.cached-venv.outputs.cache-hit != 'true'

From 479cbf3386885d7c8d69b74eb512d855dec9470f Mon Sep 17 00:00:00 2001
From: Kristoffer Andersson <kristoffer.andersson@gu.se>
Date: Wed, 16 Oct 2024 09:15:35 +0200
Subject: [PATCH 08/29] ci: set python 3.9 as minimum version

---
 .github/workflows/check.yml     | 8 ++++----
 .github/workflows/release.yml   | 6 +++---
 .github/workflows/scheduled.yml | 1 -
 .github/workflows/test.yml      | 7 +++----
 4 files changed, 10 insertions(+), 12 deletions(-)

diff --git a/.github/workflows/check.yml b/.github/workflows/check.yml
index 0e3824e..f6bc7c3 100644
--- a/.github/workflows/check.yml
+++ b/.github/workflows/check.yml
@@ -11,7 +11,7 @@ permissions:
   contents: read
 
 env:
-  MINIMUM_PYTHON_VERSION: "3.8"
+  MINIMUM_PYTHON_VERSION: "3.9"
   UV_VERSION: "0.4.18"
   UV_CACHE_DIR: /tmp/.uv-cache
 
@@ -24,7 +24,7 @@ concurrency:
 jobs:
   fmt:
     runs-on: ubuntu-latest
-    name: ubuntu / 3.8 / fmt
+    name: ubuntu / 3.9 / fmt
     steps:
       - uses: actions/checkout@v4
         with:
@@ -69,7 +69,7 @@ jobs:
         run: uv cache prune --ci
   lint:
     runs-on: ubuntu-latest
-    name: ubuntu / 3.8 / lint
+    name: ubuntu / 3.9 / lint
     steps:
       - uses: actions/checkout@v4
         with:
@@ -112,7 +112,7 @@ jobs:
 
   type-check:
     runs-on: ubuntu-latest
-    name: ubuntu / 3.8 / type-check
+    name: ubuntu / 3.9 / type-check
     steps:
       - uses: actions/checkout@v4
         with:
diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml
index 4d3b95f..19310c0 100644
--- a/.github/workflows/release.yml
+++ b/.github/workflows/release.yml
@@ -16,7 +16,7 @@ permissions:
   contents: read
 
 env:
-  MINIMUM_PYTHON_VERSION: "3.8"
+  MINIMUM_PYTHON_VERSION: "3.9"
   UV_VERSION: "0.4.18"
   UV_CACHE_DIR: /tmp/.uv-cache
 
@@ -24,7 +24,7 @@ jobs:
   build:
     # This action builds distribution files for upload to PyPI
 
-    name: ubuntu / 3.8 / build
+    name: ubuntu / 3.9 / build
     runs-on: ubuntu-latest
     steps:
       #----------------------------------------------
@@ -80,7 +80,7 @@ jobs:
     # This action runs the test suite on the built artifact in the `build` action.
     # The default is to run this in ubuntu, macos and windows
 
-    name: ${{ matrix.os }} / 3.8 / test built artifact
+    name: ${{ matrix.os }} / 3.9 / test built artifact
     needs: [build]
 
     strategy:
diff --git a/.github/workflows/scheduled.yml b/.github/workflows/scheduled.yml
index 369dd87..4b262f4 100644
--- a/.github/workflows/scheduled.yml
+++ b/.github/workflows/scheduled.yml
@@ -18,7 +18,6 @@ concurrency:
 name: rolling
 
 env:
-  MINIMUM_PYTHON_VERSION: "3.8"
   UV_VERSION: "0.4.18"
   UV_CACHE_DIR: /tmp/.uv-cache
 
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
index 062706b..a5a5805 100644
--- a/.github/workflows/test.yml
+++ b/.github/workflows/test.yml
@@ -15,7 +15,7 @@ permissions:
   contents: read
 
 env:
-  MINIMUM_PYTHON_VERSION: "3.8"
+  MINIMUM_PYTHON_VERSION: "3.9"
   UV_VERSION: "0.4.18"
   UV_CACHE_DIR: /tmp/.uv-cache
 
@@ -33,7 +33,6 @@ jobs:
         os: [ubuntu]
         python-version:
           # remove the unused versions
-          - "3.8"
           - "3.9"
           - "3.10"
           - "3.11"
@@ -100,7 +99,7 @@ jobs:
     # This requires the secret `CODECOV_TOKEN` be set as secret on GitHub, both for
     # Actions and Dependabot
 
-    name: "${{ matrix.os }} / 3.8 / doctest"
+    name: "${{ matrix.os }} / 3.9 / doctest"
     strategy:
       max-parallel: 4
       fail-fast: false
@@ -176,7 +175,7 @@ jobs:
     #
 
     runs-on: ubuntu-latest
-    name: ubuntu / 3.8 / minimal-versions
+    name: ubuntu / 3.9 / minimal-versions
     steps:
       - uses: actions/checkout@v4
         with:

From 3cae6a5afef90da0977c4ce33bb71cedf477ea13 Mon Sep 17 00:00:00 2001
From: Kristoffer Andersson <kristoffer.andersson@gu.se>
Date: Wed, 16 Oct 2024 09:16:30 +0200
Subject: [PATCH 09/29] ci: also test for python 3.13

---
 .github/workflows/test.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
index a5a5805..b276d4f 100644
--- a/.github/workflows/test.yml
+++ b/.github/workflows/test.yml
@@ -37,6 +37,7 @@ jobs:
           - "3.10"
           - "3.11"
           - "3.12"
+          - "3.13"
 
     runs-on: ${{ matrix.os }}-latest
     env:

From db04c029437a8eedb401000218bc304d2ccd0ad7 Mon Sep 17 00:00:00 2001
From: Kristoffer Andersson <kristoffer.andersson@gu.se>
Date: Wed, 16 Oct 2024 09:16:54 +0200
Subject: [PATCH 10/29] ci: also test for python 3.14-dev

---
 .github/workflows/scheduled.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/scheduled.yml b/.github/workflows/scheduled.yml
index 4b262f4..1376cb7 100644
--- a/.github/workflows/scheduled.yml
+++ b/.github/workflows/scheduled.yml
@@ -25,7 +25,7 @@ jobs:
   # https://twitter.com/mycoliza/status/1571295690063753218
   nightly:
     runs-on: ubuntu-latest
-    name: ubuntu / 3.13-dev
+    name: ubuntu / 3.14-dev
     steps:
       - uses: actions/checkout@v4
         with:
@@ -35,7 +35,7 @@ jobs:
       - name: Install python
         uses: actions/setup-python@v5
         with:
-          python-version: "3.13-dev"
+          python-version: "3.14-dev"
       - name: Restore uv cache
         uses: actions/cache@v4
         with:

From c6c034d49f0a04f1d72b3386402b26a853519572 Mon Sep 17 00:00:00 2001
From: Kristoffer Andersson <kristoffer.andersson@gu.se>
Date: Wed, 13 Nov 2024 11:48:22 +0100
Subject: [PATCH 11/29] ci(deps): bump uv to 0.5.1

---
 .github/workflows/check.yml     | 2 +-
 .github/workflows/release.yml   | 2 +-
 .github/workflows/scheduled.yml | 2 +-
 .github/workflows/test.yml      | 2 +-
 4 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/check.yml b/.github/workflows/check.yml
index f6bc7c3..b545e58 100644
--- a/.github/workflows/check.yml
+++ b/.github/workflows/check.yml
@@ -12,7 +12,7 @@ permissions:
 
 env:
   MINIMUM_PYTHON_VERSION: "3.9"
-  UV_VERSION: "0.4.18"
+  UV_VERSION: "0.5.1"
   UV_CACHE_DIR: /tmp/.uv-cache
 
 # If new code is pushed to a PR branch, then cancel in progress workflows for that PR. Ensures that
diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml
index 19310c0..fab88a0 100644
--- a/.github/workflows/release.yml
+++ b/.github/workflows/release.yml
@@ -17,7 +17,7 @@ permissions:
 
 env:
   MINIMUM_PYTHON_VERSION: "3.9"
-  UV_VERSION: "0.4.18"
+  UV_VERSION: "0.5.1"
   UV_CACHE_DIR: /tmp/.uv-cache
 
 jobs:
diff --git a/.github/workflows/scheduled.yml b/.github/workflows/scheduled.yml
index 1376cb7..aed4466 100644
--- a/.github/workflows/scheduled.yml
+++ b/.github/workflows/scheduled.yml
@@ -18,7 +18,7 @@ concurrency:
 name: rolling
 
 env:
-  UV_VERSION: "0.4.18"
+  UV_VERSION: "0.5.1"
   UV_CACHE_DIR: /tmp/.uv-cache
 
 jobs:
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
index b276d4f..ba2deb6 100644
--- a/.github/workflows/test.yml
+++ b/.github/workflows/test.yml
@@ -16,7 +16,7 @@ permissions:
 
 env:
   MINIMUM_PYTHON_VERSION: "3.9"
-  UV_VERSION: "0.4.18"
+  UV_VERSION: "0.5.1"
   UV_CACHE_DIR: /tmp/.uv-cache
 
 jobs:

From 700690f7e3f372aa761b97c38f71db81bfaa0c74 Mon Sep 17 00:00:00 2001
From: Kristoffer Andersson <kristoffer.andersson@gu.se>
Date: Mon, 18 Nov 2024 11:40:48 +0100
Subject: [PATCH 12/29] ci: use setup-uv action

---
 .github/workflows/check.yml     | 49 ++++++++----------------------
 .github/workflows/release.yml   | 16 ++--------
 .github/workflows/scheduled.yml | 47 ++++++++++++-----------------
 .github/workflows/test.yml      | 53 ++++++++-------------------------
 4 files changed, 48 insertions(+), 117 deletions(-)

diff --git a/.github/workflows/check.yml b/.github/workflows/check.yml
index b545e58..c676a96 100644
--- a/.github/workflows/check.yml
+++ b/.github/workflows/check.yml
@@ -13,7 +13,6 @@ permissions:
 env:
   MINIMUM_PYTHON_VERSION: "3.9"
   UV_VERSION: "0.5.1"
-  UV_CACHE_DIR: /tmp/.uv-cache
 
 # If new code is pushed to a PR branch, then cancel in progress workflows for that PR. Ensures that
 # we don't waste CI time, and returns results quicker https://github.com/jonhoo/rust-ci-conf/pull/5
@@ -40,16 +39,10 @@ jobs:
       #  -----  setup uv and load cache   -----
       #----------------------------------------------
       - name: Set up uv
-        run: curl -LsSf https://astral.sh/uv/${{ env.UV_VERSION }}/install.sh | sh
-
-      - name: Restore uv cache
-        uses: actions/cache@v4
+        uses: astral-sh/setup-uv@v3
         with:
-          path: /tmp/.uv-cache
-          key: uv-${{ runner.os }}-${{ hashFiles('uv.lock') }}
-          restore-keys: |
-            uv-${{ runner.os }}-${{ hashFiles('uv.lock') }}
-            uv-${{ runner.os }}
+          version: ${{ env.UV_VERSION }}
+          enable-cache: true
 
       - name: Load cached venv
         id: cached-venv
@@ -65,8 +58,6 @@ jobs:
       - name: check formatting
         run: make check-fmt
 
-      - name: Minimize uv cache
-        run: uv cache prune --ci
   lint:
     runs-on: ubuntu-latest
     name: ubuntu / 3.9 / lint
@@ -84,16 +75,10 @@ jobs:
       #  -----  setup uv and load cache   -----
       #----------------------------------------------
       - name: Set up uv
-        run: curl -LsSf https://astral.sh/uv/${{ env.UV_VERSION }}/install.sh | sh
-
-      - name: Restore uv cache
-        uses: actions/cache@v4
+        uses: astral-sh/setup-uv@v3
         with:
-          path: /tmp/.uv-cache
-          key: uv-${{ runner.os }}-${{ hashFiles('uv.lock') }}
-          restore-keys: |
-            uv-${{ runner.os }}-${{ hashFiles('uv.lock') }}
-            uv-${{ runner.os }}
+          version: ${{ env.UV_VERSION }}
+          enable-cache: true
 
       - name: Load cached venv
         id: cached-venv
@@ -101,15 +86,14 @@ jobs:
         with:
           path: .venv
           key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/pyproject.toml') }}-${{ hashFiles('**/uv.lock') }}
+
       - name: Install dependencies
         if: steps.cached-venv.outputs.cache-hit != 'true'
         run: make install-dev
+
       - name: lint code
         run: make lint
 
-      - name: Minimize uv cache
-        run: uv cache prune --ci
-
   type-check:
     runs-on: ubuntu-latest
     name: ubuntu / 3.9 / type-check
@@ -127,16 +111,10 @@ jobs:
       #  -----  setup uv and load cache   -----
       #----------------------------------------------
       - name: Set up uv
-        run: curl -LsSf https://astral.sh/uv/${{ env.UV_VERSION }}/install.sh | sh
-
-      - name: Restore uv cache
-        uses: actions/cache@v4
+        uses: astral-sh/setup-uv@v3
         with:
-          path: /tmp/.uv-cache
-          key: uv-${{ runner.os }}-${{ hashFiles('uv.lock') }}
-          restore-keys: |
-            uv-${{ runner.os }}-${{ hashFiles('uv.lock') }}
-            uv-${{ runner.os }}
+          version: ${{ env.UV_VERSION }}
+          enable-cache: true
 
       - name: Load cached venv
         id: cached-venv
@@ -144,15 +122,14 @@ jobs:
         with:
           path: .venv
           key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/pyproject.toml') }}-${{ hashFiles('**/uv.lock') }}
+
       - name: Install dependencies
         if: steps.cached-venv.outputs.cache-hit != 'true'
         run: make install-dev
+
       - name: type-check code
         run: make type-check
 
-      - name: Minimize uv cache
-        run: uv cache prune --ci
-
   # https://github.com/marketplace/actions/alls-green#why used for branch protection checks
   check-check:
     if: always()
diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml
index fab88a0..8356034 100644
--- a/.github/workflows/release.yml
+++ b/.github/workflows/release.yml
@@ -18,7 +18,6 @@ permissions:
 env:
   MINIMUM_PYTHON_VERSION: "3.9"
   UV_VERSION: "0.5.1"
-  UV_CACHE_DIR: /tmp/.uv-cache
 
 jobs:
   build:
@@ -48,16 +47,10 @@ jobs:
       #  -----  setup uv and load cache   -----
       #----------------------------------------------
       - name: Set up uv
-        run: curl -LsSf https://astral.sh/uv/${{ env.UV_VERSION }}/install.sh | sh
-
-      - name: Restore uv cache
-        uses: actions/cache@v4
+        uses: astral-sh/setup-uv@v3
         with:
-          path: /tmp/.uv-cache
-          key: uv-${{ runner.os }}-${{ hashFiles('uv.lock') }}
-          restore-keys: |
-            uv-${{ runner.os }}-${{ hashFiles('uv.lock') }}
-            uv-${{ runner.os }}
+          version: ${{ env.UV_VERSION }}
+          enable-cache: true
 
       #----------------------------------------------
       #  -----  build distribution -----
@@ -73,9 +66,6 @@ jobs:
           name: pypi_files
           path: dist
 
-      - name: Minimize uv cache
-        run: uv cache prune --ci
-
   test-build:
     # This action runs the test suite on the built artifact in the `build` action.
     # The default is to run this in ubuntu, macos and windows
diff --git a/.github/workflows/scheduled.yml b/.github/workflows/scheduled.yml
index aed4466..ab75168 100644
--- a/.github/workflows/scheduled.yml
+++ b/.github/workflows/scheduled.yml
@@ -19,7 +19,6 @@ name: rolling
 
 env:
   UV_VERSION: "0.5.1"
-  UV_CACHE_DIR: /tmp/.uv-cache
 
 jobs:
   # https://twitter.com/mycoliza/status/1571295690063753218
@@ -30,72 +29,64 @@ jobs:
       - uses: actions/checkout@v4
         with:
           submodules: true
+
       - name: Set up uv
-        run: curl -LsSf https://astral.sh/uv/${{ env.UV_VERSION }}/install.sh | sh
+        uses: astral-sh/setup-uv@v3
+        with:
+          version: ${{ env.UV_VERSION }}
+          enable-cache: true
+
       - name: Install python
         uses: actions/setup-python@v5
         with:
           python-version: "3.14-dev"
-      - name: Restore uv cache
-        uses: actions/cache@v4
-        with:
-          path: /tmp/.uv-cache
-          key: uv-${{ runner.os }}-${{ hashFiles('uv.lock') }}
-          restore-keys: |
-            uv-${{ runner.os }}-${{ hashFiles('uv.lock') }}
-            uv-${{ runner.os }}
+
       - run: python --version
+
       - name: uv lock
         if: hashFiles('uv.lock') == ''
         run: uv lock
+
       - name: uv sync --dev
         run: uv sync --dev
+
       - name: make test
         run: make test
 
-      - name: Minimize uv cache
-        run: uv cache prune --ci
   # https://twitter.com/alcuadrado/status/1571291687837732873
   update:
     # This action checks that updating the dependencies of this crate to the latest available that
-    # satisfy the versions in Cargo.toml does not break this crate. This is important as consumers
+    # satisfy the versions in pyproject.toml does not break this crate. This is important as consumers
     # of this crate will generally use the latest available crates. This is subject to the standard
     # Cargo semver rules (i.e cargo does not update to a new major version unless explicitly told
     # to).
     runs-on: ubuntu-latest
     name: ubuntu / 3.12 / updates work
-    # There's no point running this if no Cargo.lock was checked in in the first place, since we'd
+    # There's no point running this if no uv.lock was checked in in the first place, since we'd
     # just redo what happened in the regular test job. Unfortunately, hashFiles only works in if on
     # steps, so we repeat it.
     steps:
       - uses: actions/checkout@v4
         with:
           submodules: true
+
       - name: Set up uv
         if: hashFiles('uv.lock') != ''
-        run: curl -LsSf https://astral.sh/uv/${{ env.UV_VERSION }}/install.sh | sh
+        uses: astral-sh/setup-uv@v3
+        with:
+          version: ${{ env.UV_VERSION }}
+          enable-cache: true
+
       - name: Install 3.12
         if: hashFiles('uv.lock') != ''
         uses: actions/setup-python@v5
         with:
           python-version: "3.12"
 
-      - name: Restore uv cache
-        uses: actions/cache@v4
-        with:
-          path: /tmp/.uv-cache
-          key: uv-${{ runner.os }}-${{ hashFiles('uv.lock') }}
-          restore-keys: |
-            uv-${{ runner.os }}-${{ hashFiles('uv.lock') }}
-            uv-${{ runner.os }}
-
       - name: uv sync --dev --upgrade
         if: hashFiles('uv.lock') != ''
         run: uv sync --dev --upgrade
+
       - name: make test
         if: hashFiles('uv.lock') != ''
         run: make test
-
-      - name: Minimize uv cache
-        if: hashFiles('uv.lock') != ''
-        run: uv cache prune --ci
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
index ba2deb6..d202747 100644
--- a/.github/workflows/test.yml
+++ b/.github/workflows/test.yml
@@ -17,7 +17,6 @@ permissions:
 env:
   MINIMUM_PYTHON_VERSION: "3.9"
   UV_VERSION: "0.5.1"
-  UV_CACHE_DIR: /tmp/.uv-cache
 
 jobs:
   coverage:
@@ -49,7 +48,10 @@ jobs:
           submodules: true
 
       - name: Set up uv
-        run: curl -LsSf https://astral.sh/uv/${{ env.UV_VERSION }}/install.sh | sh
+        uses: astral-sh/setup-uv@v3
+        with:
+          version: ${{ env.UV_VERSION }}
+          enable-cache: true
 
       - name: Set up Python ${{ matrix.python-version }}
         id: setup-python
@@ -57,15 +59,6 @@ jobs:
         with:
           python-version: ${{ matrix.python-version }}
 
-      - name: Restore uv cache
-        uses: actions/cache@v4
-        with:
-          path: /tmp/.uv-cache
-          key: uv-${{ runner.os }}-${{ hashFiles('uv.lock') }}
-          restore-keys: |
-            uv-${{ runner.os }}-${{ hashFiles('uv.lock') }}
-            uv-${{ runner.os }}
-
       - name: Load cached venv
         id: cached-venv
         uses: actions/cache@v4
@@ -80,9 +73,6 @@ jobs:
       - name: Run tests for coverage
         run: make test-w-coverage cov_report=xml
 
-      - name: Minimize uv cache
-        run: uv cache prune --ci
-
       - name: Upload coverage to Codecov
         uses: codecov/codecov-action@v4
         with:
@@ -116,7 +106,10 @@ jobs:
           submodules: true
 
       - name: Set up uv
-        run: curl -LsSf https://astral.sh/uv/${{ env.UV_VERSION }}/install.sh | sh
+        uses: astral-sh/setup-uv@v3
+        with:
+          version: ${{ env.UV_VERSION }}
+          enable-cache: true
 
       - name: Set up Python ${{ env.MINIMUM_PYTHON_VERSION }}
         id: setup-python
@@ -124,15 +117,6 @@ jobs:
         with:
           python-version: ${{ env.MINIMUM_PYTHON_VERSION }}
 
-      - name: Restore uv cache
-        uses: actions/cache@v4
-        with:
-          path: /tmp/.uv-cache
-          key: uv-${{ runner.os }}-${{ hashFiles('uv.lock') }}
-          restore-keys: |
-            uv-${{ runner.os }}-${{ hashFiles('uv.lock') }}
-            uv-${{ runner.os }}
-
       - name: Load cached venv
         id: cached-venv
         uses: actions/cache@v4
@@ -149,9 +133,6 @@ jobs:
       - name: make doc-tests
         run: make doc-tests cov_report=xml
 
-      - name: Minimize uv cache
-        run: uv cache prune --ci
-
       - name: Upload coverage to Codecov
         uses: codecov/codecov-action@v4
         with:
@@ -181,8 +162,12 @@ jobs:
       - uses: actions/checkout@v4
         with:
           submodules: true
+
       - name: Set up uv
-        run: curl -LsSf https://astral.sh/uv/${{ env.UV_VERSION }}/install.sh | sh
+        uses: astral-sh/setup-uv@v3
+        with:
+          version: ${{ env.UV_VERSION }}
+          enable-cache: true
 
       - name: Set up Python ${{ env.MINIMUM_PYTHON_VERSION }}
         id: setup-python
@@ -190,24 +175,12 @@ jobs:
         with:
           python-version: ${{ env.MINIMUM_PYTHON_VERSION }}
 
-      - name: Restore uv cache
-        uses: actions/cache@v4
-        with:
-          path: /tmp/.uv-cache
-          key: uv-${{ runner.os }}-${{ hashFiles('uv.lock') }}
-          restore-keys: |
-            uv-${{ runner.os }}-${{ hashFiles('uv.lock') }}
-            uv-${{ runner.os }}
-
       - name: install lowest direct dependencies
         run: uv sync --resolution lowest-direct --all-extras --dev
 
       - name: make test
         run: make test
 
-      - name: Minimize uv cache
-        run: uv cache prune --ci
-
   # https://github.com/marketplace/actions/alls-green#why used for branch protection checks
   test-check:
     if: always()

From aa660f6382f1f5a477e451f2cdfc14d869b465a2 Mon Sep 17 00:00:00 2001
From: Kristoffer Andersson <kristoffer.andersson@gu.se>
Date: Mon, 18 Nov 2024 11:41:25 +0100
Subject: [PATCH 13/29] ci: bump codecov-action to v5

---
 .github/workflows/test.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
index d202747..840760e 100644
--- a/.github/workflows/test.yml
+++ b/.github/workflows/test.yml
@@ -74,7 +74,7 @@ jobs:
         run: make test-w-coverage cov_report=xml
 
       - name: Upload coverage to Codecov
-        uses: codecov/codecov-action@v4
+        uses: codecov/codecov-action@v5
         with:
           token: ${{ secrets.CODECOV_TOKEN }}
           # directory: ./coverage

From e3ef75729ac874d43e1ebc7388e318ddec77baa2 Mon Sep 17 00:00:00 2001
From: Kristoffer Andersson <kristoffer.andersson@gu.se>
Date: Mon, 18 Nov 2024 11:44:36 +0100
Subject: [PATCH 14/29] chore: update uv export

---
 Makefile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/Makefile b/Makefile
index d944107..9afe206 100644
--- a/Makefile
+++ b/Makefile
@@ -151,7 +151,7 @@ prepare-release: update-changelog tests/requirements-testing.lock
 
 # we use lock extension so that dependabot doesn't pick up changes in this file
 tests/requirements-testing.lock: pyproject.toml
-	uv pip compile $< --output-file $@
+	uv export --dev --format requirements.txt --no-hashes $< --output-file $@
 
 .PHONY: update-changelog
 update-changelog: CHANGELOG.md

From c75d70bd8f6e4d9fc6ffdd7125a8e2ceeed35fec Mon Sep 17 00:00:00 2001
From: Kristoffer Andersson <kristoffer.andersson@gu.se>
Date: Mon, 18 Nov 2024 12:50:12 +0100
Subject: [PATCH 15/29] chore: fix typo

---
 Makefile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/Makefile b/Makefile
index 9afe206..c36595b 100644
--- a/Makefile
+++ b/Makefile
@@ -151,7 +151,7 @@ prepare-release: update-changelog tests/requirements-testing.lock
 
 # we use lock extension so that dependabot doesn't pick up changes in this file
 tests/requirements-testing.lock: pyproject.toml
-	uv export --dev --format requirements.txt --no-hashes $< --output-file $@
+	uv export --dev --format requirements-txt --no-hashes $< --output-file $@
 
 .PHONY: update-changelog
 update-changelog: CHANGELOG.md

From 2c86ff780262f2664fea0f151f5b9e339fd8657e Mon Sep 17 00:00:00 2001
From: Kristoffer Andersson <kristoffer.andersson@gu.se>
Date: Mon, 18 Nov 2024 12:51:59 +0100
Subject: [PATCH 16/29] chore: fix uv export

---
 Makefile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/Makefile b/Makefile
index c36595b..af4469f 100644
--- a/Makefile
+++ b/Makefile
@@ -151,7 +151,7 @@ prepare-release: update-changelog tests/requirements-testing.lock
 
 # we use lock extension so that dependabot doesn't pick up changes in this file
 tests/requirements-testing.lock: pyproject.toml
-	uv export --dev --format requirements-txt --no-hashes $< --output-file $@
+	uv export --dev --format requirements-txt --no-hashes --output-file $@
 
 .PHONY: update-changelog
 update-changelog: CHANGELOG.md

From 6d8852be2f30d84c26be5d6c4891b107d34a7f8d Mon Sep 17 00:00:00 2001
From: Kristoffer Andersson <kristoffer.andersson@gu.se>
Date: Mon, 18 Nov 2024 13:05:20 +0100
Subject: [PATCH 17/29] chore: do not emit project

---
 Makefile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/Makefile b/Makefile
index af4469f..2fdd52a 100644
--- a/Makefile
+++ b/Makefile
@@ -151,7 +151,7 @@ prepare-release: update-changelog tests/requirements-testing.lock
 
 # we use lock extension so that dependabot doesn't pick up changes in this file
 tests/requirements-testing.lock: pyproject.toml
-	uv export --dev --format requirements-txt --no-hashes --output-file $@
+	uv export --dev --format requirements-txt --no-hashes --no-emit-project --output-file $@
 
 .PHONY: update-changelog
 update-changelog: CHANGELOG.md

From 9ea9fdcf4ef72012f0c28ac762453870cbbf247b Mon Sep 17 00:00:00 2001
From: Kristoffer Andersson <kristoffer.andersson@gu.se>
Date: Wed, 20 Nov 2024 13:33:45 +0100
Subject: [PATCH 18/29] ci: only cache uv, not .venv

---
 .github/workflows/check.yml | 24 ------------------------
 .github/workflows/test.yml  | 16 ----------------
 2 files changed, 40 deletions(-)

diff --git a/.github/workflows/check.yml b/.github/workflows/check.yml
index c676a96..315a2c4 100644
--- a/.github/workflows/check.yml
+++ b/.github/workflows/check.yml
@@ -44,15 +44,7 @@ jobs:
           version: ${{ env.UV_VERSION }}
           enable-cache: true
 
-      - name: Load cached venv
-        id: cached-venv
-        uses: actions/cache@v4
-        with:
-          path: .venv
-          key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/pyproject.toml') }}-${{ hashFiles('**/uv.lock') }}
-
       - name: Install dependencies
-        if: steps.cached-venv.outputs.cache-hit != 'true'
         run: make install-dev
 
       - name: check formatting
@@ -80,15 +72,7 @@ jobs:
           version: ${{ env.UV_VERSION }}
           enable-cache: true
 
-      - name: Load cached venv
-        id: cached-venv
-        uses: actions/cache@v4
-        with:
-          path: .venv
-          key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/pyproject.toml') }}-${{ hashFiles('**/uv.lock') }}
-
       - name: Install dependencies
-        if: steps.cached-venv.outputs.cache-hit != 'true'
         run: make install-dev
 
       - name: lint code
@@ -116,15 +100,7 @@ jobs:
           version: ${{ env.UV_VERSION }}
           enable-cache: true
 
-      - name: Load cached venv
-        id: cached-venv
-        uses: actions/cache@v4
-        with:
-          path: .venv
-          key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/pyproject.toml') }}-${{ hashFiles('**/uv.lock') }}
-
       - name: Install dependencies
-        if: steps.cached-venv.outputs.cache-hit != 'true'
         run: make install-dev
 
       - name: type-check code
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
index 840760e..fafff67 100644
--- a/.github/workflows/test.yml
+++ b/.github/workflows/test.yml
@@ -59,15 +59,7 @@ jobs:
         with:
           python-version: ${{ matrix.python-version }}
 
-      - name: Load cached venv
-        id: cached-venv
-        uses: actions/cache@v4
-        with:
-          path: .venv
-          key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/pyproject.toml') }}-${{ hashFiles('**/uv.lock') }}
-
       - name: Install dependencies
-        if: steps.cached-venv.outputs.cache-hit != 'true'
         run: uv sync --all-extras --dev
 
       - name: Run tests for coverage
@@ -117,15 +109,7 @@ jobs:
         with:
           python-version: ${{ env.MINIMUM_PYTHON_VERSION }}
 
-      - name: Load cached venv
-        id: cached-venv
-        uses: actions/cache@v4
-        with:
-          path: .venv
-          key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/pyproject.toml') }}-${{ hashFiles('**/uv.lock') }}
-
       - name: Install dependencies
-        if: steps.cached-venv.outputs.cache-hit != 'true'
         run: uv sync --all-extras --dev
       #----------------------------------------------
       # Run tests and upload coverage

From 3a2fff0cccbbf82d504e1c0029a38994add5a12b Mon Sep 17 00:00:00 2001
From: Kristoffer Andersson <kristoffer.andersson@gu.se>
Date: Wed, 20 Nov 2024 13:36:17 +0100
Subject: [PATCH 19/29] ci: add --all-packages to uv sync calls

---
 .github/workflows/scheduled.yml | 4 ++--
 .github/workflows/test.yml      | 2 +-
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/scheduled.yml b/.github/workflows/scheduled.yml
index ab75168..d1555b4 100644
--- a/.github/workflows/scheduled.yml
+++ b/.github/workflows/scheduled.yml
@@ -48,7 +48,7 @@ jobs:
         run: uv lock
 
       - name: uv sync --dev
-        run: uv sync --dev
+        run: uv sync --dev --all-packages
 
       - name: make test
         run: make test
@@ -85,7 +85,7 @@ jobs:
 
       - name: uv sync --dev --upgrade
         if: hashFiles('uv.lock') != ''
-        run: uv sync --dev --upgrade
+        run: uv sync --dev --upgrade --all-packages
 
       - name: make test
         if: hashFiles('uv.lock') != ''
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
index fafff67..8f3ef26 100644
--- a/.github/workflows/test.yml
+++ b/.github/workflows/test.yml
@@ -160,7 +160,7 @@ jobs:
           python-version: ${{ env.MINIMUM_PYTHON_VERSION }}
 
       - name: install lowest direct dependencies
-        run: uv sync --resolution lowest-direct --all-extras --dev
+        run: uv sync --resolution lowest-direct --all-extras --all-packages --dev
 
       - name: make test
         run: make test

From 272aaf5eeaef6c038200339a71b50889b6225919 Mon Sep 17 00:00:00 2001
From: Kristoffer Andersson <kristoffer.andersson@gu.se>
Date: Thu, 21 Nov 2024 12:10:06 +0100
Subject: [PATCH 20/29] chore: add --all-packages to uv sync calls

---
 Makefile | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/Makefile b/Makefile
index 2fdd52a..1147c92 100644
--- a/Makefile
+++ b/Makefile
@@ -83,11 +83,11 @@ dev: install-dev
 
 # setup development environment
 install-dev:
-	uv sync --dev
+	uv sync --all-packages --dev
 
 # setup production environment
 install:
-	uv sync --no-dev
+	uv sync --all-packages --no-dev
 
 lock: uv.lock
 

From cf7f0e57dbc15be7bbef517233795711fbdd0693 Mon Sep 17 00:00:00 2001
From: Kristoffer Andersson <kristoffer.andersson@gu.se>
Date: Thu, 21 Nov 2024 12:46:58 +0100
Subject: [PATCH 21/29] ci: bump codecov-action to v5

---
 .github/workflows/test.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
index 8f3ef26..f91f3ca 100644
--- a/.github/workflows/test.yml
+++ b/.github/workflows/test.yml
@@ -118,7 +118,7 @@ jobs:
         run: make doc-tests cov_report=xml
 
       - name: Upload coverage to Codecov
-        uses: codecov/codecov-action@v4
+        uses: codecov/codecov-action@v5
         with:
           token: ${{ secrets.CODECOV_TOKEN }}
           # directory: ./coverage

From 80a256601da81f4b0487a2c23288fee3d216dba2 Mon Sep 17 00:00:00 2001
From: Kristoffer Andersson <kristoffer.andersson@gu.se>
Date: Thu, 21 Nov 2024 12:52:15 +0100
Subject: [PATCH 22/29] chore: use uv instead of pdm

---
 pdm.lock                               | 2605 ------------------------
 pyproject.toml                         |   19 +-
 uv.lock                                | 2032 ++++++++++++++++++
 word-prediction-kb-bert/pdm.lock       | 2200 --------------------
 word-prediction-kb-bert/pyproject.toml |   12 +-
 5 files changed, 2046 insertions(+), 4822 deletions(-)
 delete mode 100644 pdm.lock
 create mode 100644 uv.lock
 delete mode 100644 word-prediction-kb-bert/pdm.lock

diff --git a/pdm.lock b/pdm.lock
deleted file mode 100644
index fbc2898..0000000
--- a/pdm.lock
+++ /dev/null
@@ -1,2605 +0,0 @@
-# This file is @generated by PDM.
-# It is not intended for manual editing.
-
-[metadata]
-groups = ["default", "dev"]
-strategy = ["cross_platform", "inherit_metadata"]
-lock_version = "4.4.1"
-content_hash = "sha256:8c205f994215e252813b579781ff9bf1bc0c6ae4e89eb38dbb88e1fdc2b80a10"
-
-[[package]]
-name = "annotated-types"
-version = "0.6.0"
-requires_python = ">=3.8"
-summary = "Reusable constraint types to use with typing.Annotated"
-groups = ["dev"]
-dependencies = [
-    "typing-extensions>=4.0.0; python_version < \"3.9\"",
-]
-files = [
-    {file = "annotated_types-0.6.0-py3-none-any.whl", hash = "sha256:0641064de18ba7a25dee8f96403ebc39113d0cb953a01429249d5c7564666a43"},
-    {file = "annotated_types-0.6.0.tar.gz", hash = "sha256:563339e807e53ffd9c267e99fc6d9ea23eb8443c08f112651963e24e22f84a5d"},
-]
-
-[[package]]
-name = "appdirs"
-version = "1.4.4"
-summary = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
-groups = ["dev"]
-files = [
-    {file = "appdirs-1.4.4-py2.py3-none-any.whl", hash = "sha256:a841dacd6b99318a741b166adb07e19ee71a274450e68237b4650ca1055ab128"},
-    {file = "appdirs-1.4.4.tar.gz", hash = "sha256:7d5d0167b2b1ba821647616af46a749d1c653740dd0d2415100fe26e27afdf41"},
-]
-
-[[package]]
-name = "argcomplete"
-version = "3.1.6"
-requires_python = ">=3.8"
-summary = "Bash tab completion for argparse"
-groups = ["dev"]
-files = [
-    {file = "argcomplete-3.1.6-py3-none-any.whl", hash = "sha256:71f4683bc9e6b0be85f2b2c1224c47680f210903e23512cfebfe5a41edfd883a"},
-    {file = "argcomplete-3.1.6.tar.gz", hash = "sha256:3b1f07d133332547a53c79437527c00be48cca3807b1d4ca5cab1b26313386a6"},
-]
-
-[[package]]
-name = "attrs"
-version = "23.2.0"
-requires_python = ">=3.7"
-summary = "Classes Without Boilerplate"
-groups = ["dev"]
-files = [
-    {file = "attrs-23.2.0-py3-none-any.whl", hash = "sha256:99b87a485a5820b23b879f04c2305b44b951b502fd64be915879d77a7e8fc6f1"},
-    {file = "attrs-23.2.0.tar.gz", hash = "sha256:935dc3b529c262f6cf76e50877d35a4bd3c1de194fd41f47a2b7ae8f19971f30"},
-]
-
-[[package]]
-name = "bracex"
-version = "2.4"
-requires_python = ">=3.8"
-summary = "Bash style brace expander."
-groups = ["dev"]
-files = [
-    {file = "bracex-2.4-py3-none-any.whl", hash = "sha256:efdc71eff95eaff5e0f8cfebe7d01adf2c8637c8c92edaf63ef348c241a82418"},
-    {file = "bracex-2.4.tar.gz", hash = "sha256:a27eaf1df42cf561fed58b7a8f3fdf129d1ea16a81e1fadd1d17989bc6384beb"},
-]
-
-[[package]]
-name = "bump-my-version"
-version = "0.21.0"
-requires_python = ">=3.8"
-summary = "Version bump your Python project"
-groups = ["dev"]
-dependencies = [
-    "click",
-    "pydantic-settings",
-    "pydantic>=2.0.0",
-    "questionary",
-    "rich",
-    "rich-click",
-    "tomlkit",
-    "wcmatch>=8.5.1",
-]
-files = [
-    {file = "bump_my_version-0.21.0-py3-none-any.whl", hash = "sha256:a614d8176b5ac0e644239c9a8a246b696d316f68406fd78b8486a9e13fc93266"},
-    {file = "bump_my_version-0.21.0.tar.gz", hash = "sha256:c3f1a31e32345679b517cbba99a0875457ee45d7ba6189fcd2a74d3ddae41515"},
-]
-
-[[package]]
-name = "certifi"
-version = "2024.2.2"
-requires_python = ">=3.6"
-summary = "Python package for providing Mozilla's CA Bundle."
-groups = ["dev"]
-files = [
-    {file = "certifi-2024.2.2-py3-none-any.whl", hash = "sha256:dc383c07b76109f368f6106eee2b593b04a011ea4d55f652c6ca24a754d1cdd1"},
-    {file = "certifi-2024.2.2.tar.gz", hash = "sha256:0569859f95fc761b18b45ef421b1290a0f65f147e92a1e5eb3e635f9a5e4e66f"},
-]
-
-[[package]]
-name = "cffi"
-version = "1.16.0"
-requires_python = ">=3.8"
-summary = "Foreign Function Interface for Python calling C code."
-groups = ["dev"]
-marker = "platform_python_implementation != \"PyPy\""
-dependencies = [
-    "pycparser",
-]
-files = [
-    {file = "cffi-1.16.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:6b3d6606d369fc1da4fd8c357d026317fbb9c9b75d36dc16e90e84c26854b088"},
-    {file = "cffi-1.16.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:ac0f5edd2360eea2f1daa9e26a41db02dd4b0451b48f7c318e217ee092a213e9"},
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diff --git a/pyproject.toml b/pyproject.toml
index 46bd459..8fa4206 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,17 +1,12 @@
 [project]
 name = "sparv-sbx-word-prediction-workspace"
 dependencies = []
-requires-python = ">=3.8.1,<3.12"
+requires-python = ">=3.9"
 version = "0.0.0"
 
-[tool.pdm.dev-dependencies]
-dev = [
-    "-e word-prediction-kb-bert @ file:///${PROJECT_ROOT}/word-prediction-kb-bert",
-    "pytest>=8.1.1",
-    "pytest-cov>=4.1.0",
-    "mypy>=1.9.0",
-    "ruff>=0.3.2",
-    "bump-my-version>=0.19.0",
-    "syrupy>=4.6.1",
-    "sparv-pipeline-testing @ git+https://github.com/spraakbanken/sparv-pipeline-testing.git@v0.1.7",
-]
+
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+members = ["word-prediction-kb-bert"]
+
+[dependency-groups]
+dev = ["pytest>=8.3.3"]
diff --git a/uv.lock b/uv.lock
new file mode 100644
index 0000000..bedc64b
--- /dev/null
+++ b/uv.lock
@@ -0,0 +1,2032 @@
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-]
-
-[[package]]
-name = "yte"
-version = "1.5.4"
-requires_python = ">=3.7"
-summary = "A YAML template engine with Python expressions"
-groups = ["default", "dev"]
-dependencies = [
-    "dpath<3.0,>=2.1",
-    "plac<2.0.0,>=1.3.4",
-    "pyyaml<7.0,>=6.0",
-]
-files = [
-    {file = "yte-1.5.4-py3-none-any.whl", hash = "sha256:14ccfcb57d60b7652041b606129851423805140b22f52f5152f7c2692cd7b905"},
-    {file = "yte-1.5.4.tar.gz", hash = "sha256:d2d77e53eafca74f58234fcd3fea28cc0a719e4f3784911511e35e86594bc880"},
-]
-
-[[package]]
-name = "zipp"
-version = "3.18.1"
-requires_python = ">=3.8"
-summary = "Backport of pathlib-compatible object wrapper for zip files"
-groups = ["default", "dev"]
-files = [
-    {file = "zipp-3.18.1-py3-none-any.whl", hash = "sha256:206f5a15f2af3dbaee80769fb7dc6f249695e940acca08dfb2a4769fe61e538b"},
-    {file = "zipp-3.18.1.tar.gz", hash = "sha256:2884ed22e7d8961de1c9a05142eb69a247f120291bc0206a00a7642f09b5b715"},
-]
diff --git a/word-prediction-kb-bert/pyproject.toml b/word-prediction-kb-bert/pyproject.toml
index 69da96d..a927719 100644
--- a/word-prediction-kb-bert/pyproject.toml
+++ b/word-prediction-kb-bert/pyproject.toml
@@ -12,7 +12,7 @@ dependencies = [
 ]
 license = "MIT"
 readme = "README.md"
-requires-python = ">= 3.8.1,<3.12"
+requires-python = ">= 3.9"
 classifiers = [
     "Development Status :: 4 - Beta",
     # "Development Status :: 5 - Production/Stable",
@@ -55,10 +55,12 @@ packages = ["src/sbx_word_prediction_kb_bert"]
 [tool.hatch.metadata]
 allow-direct-references = true
 
+[tool.uv.sources]
+sparv-pipeline-testing = { git = "https://github.com/spraakbanken/sparv-pipeline-testing.git", rev = "v0.1.7" }
 
-[tool.pdm.dev-dependencies]
+[dependency-groups]
 dev = [
-    "pytest>=8.0.0",
-    "syrupy>=4.6.1",
-    "sparv-pipeline-testing @ git+https://github.com/spraakbanken/sparv-pipeline-testing.git@v0.1.7",
+    "pytest>=8.3.3",
+    "sparv-pipeline-testing",
+    "syrupy>=4.7.2",
 ]

From 7f43fa2a6d021d44b8c1984594f6cbec2449b0af Mon Sep 17 00:00:00 2001
From: Kristoffer Andersson <kristoffer.andersson@gu.se>
Date: Thu, 21 Nov 2024 12:53:32 +0100
Subject: [PATCH 23/29] chore: migrate pre-commit-config

---
 .pre-commit-config.yaml | 55 ++++++++++++++++++-----------------------
 1 file changed, 24 insertions(+), 31 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 23fc147..a84b1f6 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -1,34 +1,27 @@
 # See https://pre-commit.com for more information
 # See https://pre-commit.com/hooks.html for more hooks
 repos:
-  - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.5.0
-    hooks:
-      - id: check-yaml
-        stages: [commit]
-      - id: check-json
-        stages: [commit]
-      - id: check-toml
-        stages: [commit]
-      - id: check-merge-conflict
-        stages: [commit]
-      - id: check-case-conflict
-        stages: [commit]
-      - id: detect-private-key
-        stages: [commit]
-      # - id: end-of-file-fixer
-      - id: check-added-large-files
-        stages: [commit]
-  - repo: https://github.com/astral-sh/ruff-pre-commit
-    # Ruff version.
-    rev: v0.3.2
-    hooks:
-      # Run the linter.
-      - id: ruff
-      # Run the formatter.
-      - id: ruff-format
-  - repo: https://github.com/crate-ci/committed
-    rev: v1.0.20
-    hooks:
-      - id: committed
-        stages: [commit-msg]
+    - repo: https://github.com/pre-commit/pre-commit-hooks
+      rev: v5.0.0
+      hooks:
+          - id: check-yaml
+          - id: check-json
+          - id: check-toml
+          - id: check-merge-conflict
+          - id: check-case-conflict
+          - id: detect-private-key
+          # - id: end-of-file-fixer
+          - id: check-added-large-files
+    - repo: https://github.com/astral-sh/ruff-pre-commit
+      # Ruff version.
+      rev: v0.7.4
+      hooks:
+          # Run the linter.
+          - id: ruff
+          # Run the formatter.
+          - id: ruff-format
+    - repo: https://github.com/crate-ci/committed
+      rev: v1.0.20
+      hooks:
+          - id: committed
+            stages: [commit-msg]

From db5004a6c49a356dc56f5e53168be0f3032d15c5 Mon Sep 17 00:00:00 2001
From: Kristoffer Andersson <kristoffer.andersson@gu.se>
Date: Thu, 21 Nov 2024 13:08:22 +0100
Subject: [PATCH 24/29] chore(word-prediction-kb-bert): use uv instead of pdm

---
 word-prediction-kb-bert/Makefile | 20 ++++++++++----------
 1 file changed, 10 insertions(+), 10 deletions(-)

diff --git a/word-prediction-kb-bert/Makefile b/word-prediction-kb-bert/Makefile
index 97de111..6215c9b 100644
--- a/word-prediction-kb-bert/Makefile
+++ b/word-prediction-kb-bert/Makefile
@@ -51,18 +51,18 @@ help:
 	@echo ""
 
 PLATFORM := `uname -o`
-REPO := "sparv-sbx-word-prediction"
-PROJECT_SRC := "src/word_prediction"
+REPO := sparv-sbx-word-prediction
+PROJECT_SRC := src/sbx_word_prediction_kb_bert
 
 ifeq (${VIRTUAL_ENV},)
   VENV_NAME = .venv
-  INVENV = pdm run
+  INVENV = uv run
 else
   VENV_NAME = ${VIRTUAL_ENV}
   INVENV =
 endif
 
-default_cov := "--cov=${PROJECT_SRC}"
+default_cov := "--cov=${PROJECT_SRC}/"
 cov_report := "term-missing"
 cov := ${default_cov}
 
@@ -77,14 +77,14 @@ dev: install-dev
 
 # setup development environment
 install-dev:
-	pdm install --dev
+	uv sync --all-packages --dev
 
 # setup production environment
 install:
-	pdm sync --prod
+	uv sync --all-packages --no-dev
 
 pdm.lock: pyproject.toml
-	pdm lock
+	uv lock
 
 .PHONY: test
 test:
@@ -110,7 +110,7 @@ lint:
 	${INVENV} ruff ${PROJECT_SRC} ${tests}
 
 part := "patch"
-bumpversion: 
+bumpversion:
 	${INVENV} bump-my-version bump ${part}
 
 # run formatter(s)
@@ -123,7 +123,7 @@ check-fmt:
 	${INVENV} ruff format --check ${PROJECT_SRC} ${tests}
 
 build:
-	pdm build
+	uv build
 
 branch := "main"
 publish:
@@ -135,7 +135,7 @@ prepare-release: tests/requirements-testing.lock CHANGELOG.md
 
 # we use lock extension so that dependabot doesn't pick up changes in this file
 tests/requirements-testing.lock: pdm.lock
-	pdm export --dev --format requirements --without-hashes --output $@
+	uv export --dev --format requirements-txt --no-hashes --no-emit-project --output-file $@
 
 CHANGELOG.md:
 	git cliff --unreleased --prepend $@

From 0b10ab9d770adc08bca3b5c146c97f4ebc014e44 Mon Sep 17 00:00:00 2001
From: Kristoffer Andersson <kristoffer.andersson@gu.se>
Date: Thu, 21 Nov 2024 13:17:32 +0100
Subject: [PATCH 25/29] ci: remove old release-kb-bert

---
 .github/workflows/release-kb-bert.yml | 136 --------------------------
 1 file changed, 136 deletions(-)
 delete mode 100644 .github/workflows/release-kb-bert.yml

diff --git a/.github/workflows/release-kb-bert.yml b/.github/workflows/release-kb-bert.yml
deleted file mode 100644
index 2feb641..0000000
--- a/.github/workflows/release-kb-bert.yml
+++ /dev/null
@@ -1,136 +0,0 @@
-name: release
-
-on:
-  push:
-    branches:
-      - main
-    tags:
-      - 'word-prediction-kb-bert-v[0-9]+.[0-9]+.[0-9]+'
-  pull_request:
-  merge_group:
-
-concurrency:
-  group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }}
-  cancel-in-progress: true
-permissions:
-  contents: read
-
-env:
-  MINIMUM_PYTHON_VERSION: "3.8"
-
-jobs:
-  build:
-    # This action builds distribution files for upload to PyPI
-
-    name: ubuntu / 3.8 / build
-    runs-on: ubuntu-latest
-    steps:
-      #----------------------------------------------
-      #       check-out repo and set-up python
-      #----------------------------------------------
-      - name: Check out repository
-        uses: actions/checkout@v4
-        with:
-          submodules: true
-      
-      #----------------------------------------------
-      #  -----  setup python   -----
-      #----------------------------------------------
-      - name: Set up the environment
-        uses: pdm-project/setup-pdm@v4
-        id: setup-python
-        with:
-          python-version: ${{ env.MINIMUM_PYTHON_VERSION }}
-      
-      #----------------------------------------------
-      #  -----  build distribution -----
-      #----------------------------------------------
-      - name: Build distribution
-        run: cd word-prediction-kb-bert && make build
-
-      #----------------------------------------------
-      #  -----  upload artifacts  -----
-      #----------------------------------------------
-      - uses: actions/upload-artifact@v4
-        with:
-          name: pypi_files
-          path: word-prediction-kb-bert/dist
-
-  test-build:
-    # This action runs the test suite on the built artifact in the `build` action.
-    # The default is to run this in ubuntu, macos and windows
-
-    name: ${{ matrix.os }} / 3.8 / test built artifact
-    needs: [build]
-
-    strategy:
-      fail-fast: false
-      matrix:
-        os: 
-          - ubuntu
-
-    runs-on: ${{ matrix.os }}-latest
-    steps:
-      - uses: actions/checkout@v4
-        with:
-          submodules: true
-
-      - name: set up python
-        uses: actions/setup-python@v5
-        with:
-          python-version: ${{ env.MINIMUM_PYTHON_VERSION }}
-
-      - name: get dist artifacts
-        uses: actions/download-artifact@v4
-        with:
-          name: pypi_files
-          path: dist
-
-      - run: rm -r word-prediction-kb-bert/src
-      # - run: pip install typing-extensions
-      - run: pip install -r word-prediction-kb-bert/tests/requirements-testing.lock
-      - run: pip install sparv-sbx-word-prediction-kb-bert --no-index --no-deps --find-links dist --force-reinstall
-      - run: pytest word-prediction-kb-bert/tests
-  
-  # https://github.com/marketplace/actions/alls-green#why used for branch protection checks
-  release-check:
-    if: always()
-    needs: 
-      - build
-      - test-build
-    runs-on: ubuntu-latest
-    permissions: {}
-    steps:
-      - name: Decide whether the needed jobs succeeded or failed
-        uses: re-actors/alls-green@release/v1
-        with:
-          jobs: ${{ toJSON(needs) }}
-          # allowed-failures: coverage
-
-  publish:
-    # This action publishes the built and tested artifact to PyPI, but only on a tag 
-
-    needs: 
-      - test-build
-    if: success() && startsWith(github.ref, 'refs/tags/word-prediction-kb-bert-v')
-    runs-on: ubuntu-latest
-    environment: release
-    permissions:
-      # IMPORTANT: this permission is mandatory for trusted publishing
-      id-token: write
-    steps:
-      - uses: actions/checkout@v4
-        with:
-          fetch-depth: 0
-      - name: Set up Python ${{ env.MINIMUM_PYTHON_VERSION }}
-        uses: actions/setup-python@v5
-        with:
-          python-version: ${{ env.MINIMUM_PYTHON_VERSION }}
-      - name: get dist artifacts
-        uses: actions/download-artifact@v4
-        with:
-          name: pypi_files
-          path: dist
-
-      - name: Publish package to PyPI
-        uses: pypa/gh-action-pypi-publish@release/v1

From df8ea5a6e9abdbf88bdf758b5263cf99eef08233 Mon Sep 17 00:00:00 2001
From: Kristoffer Andersson <kristoffer.andersson@gu.se>
Date: Thu, 21 Nov 2024 13:18:30 +0100
Subject: [PATCH 26/29] ci: rename release to release-kb-bert

---
 .github/workflows/{release.yml => release-kb-bert.yml} | 0
 1 file changed, 0 insertions(+), 0 deletions(-)
 rename .github/workflows/{release.yml => release-kb-bert.yml} (100%)

diff --git a/.github/workflows/release.yml b/.github/workflows/release-kb-bert.yml
similarity index 100%
rename from .github/workflows/release.yml
rename to .github/workflows/release-kb-bert.yml

From ce6eb0c8635bba18aac27911ce1df6d4f2afcc6b Mon Sep 17 00:00:00 2001
From: Kristoffer Andersson <kristoffer.andersson@gu.se>
Date: Thu, 21 Nov 2024 13:21:39 +0100
Subject: [PATCH 27/29] ci: adapt release-kb-bert.yaml to project

---
 .github/workflows/release-kb-bert.yml | 12 ++++++------
 1 file changed, 6 insertions(+), 6 deletions(-)

diff --git a/.github/workflows/release-kb-bert.yml b/.github/workflows/release-kb-bert.yml
index 8356034..0223c11 100644
--- a/.github/workflows/release-kb-bert.yml
+++ b/.github/workflows/release-kb-bert.yml
@@ -5,7 +5,7 @@ on:
     branches:
       - main
     tags:
-      - "v[0-9]+.[0-9]+.[0-9]+"
+      - "word-prediction-kb-bert-v[0-9]+.[0-9]+.[0-9]+"
   pull_request:
   merge_group:
 
@@ -56,7 +56,7 @@ jobs:
       #  -----  build distribution -----
       #----------------------------------------------
       - name: Build distribution
-        run: make build
+        run: cd word-prediction-kb-bert && make build
 
       #----------------------------------------------
       #  -----  upload artifacts  -----
@@ -98,11 +98,11 @@ jobs:
           name: pypi_files
           path: dist
 
-      - run: rm -r <INSERT PROJECT SRC>
+      - run: rm -r word-prediction-kb-bert/src
       - run: pip install typing-extensions
-      - run: pip install -r tests/requirements-testing.lock
-      - run: pip install <INSERT PROJECT NAME> --no-index --no-deps --find-links dist --force-reinstall
-      - run: pytest
+      - run: pip install -r word-prediction-kb-bert/tests/requirements-testing.lock
+      - run: pip install sparv-sbx-word-prediction-kb-bert --no-index --no-deps --find-links dist --force-reinstall
+      - run: pytest word-prediction-kb-bert/tests
 
   # https://github.com/marketplace/actions/alls-green#why used for branch protection checks
   release-check:

From ed5246a2acdaa62bb0d180d96311c422dafa0fde Mon Sep 17 00:00:00 2001
From: Kristoffer Andersson <kristoffer.andersson@gu.se>
Date: Thu, 21 Nov 2024 13:27:30 +0100
Subject: [PATCH 28/29] chore: config git-cliff to use Keep-a-changelog format

---
 cliff.toml | 85 +++++++++++++++++++++++++++++++++++-------------------
 1 file changed, 56 insertions(+), 29 deletions(-)

diff --git a/cliff.toml b/cliff.toml
index 0a614a1..e186729 100644
--- a/cliff.toml
+++ b/cliff.toml
@@ -4,16 +4,26 @@
 # Lines starting with "#" are comments.
 # Configuration options are organized into tables and keys.
 # See documentation for more information on available options.
+[remote.github]
+owner = "spraakbanken"
+repo = "sparv-sbx-word-prediction"
 
 [changelog]
 # changelog header
 header = """
 # Changelog\n
-All notable changes to this project will be documented in this file.\n
+All notable changes to this project will be documented in this file.
+
+The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/),
+and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).\n
 """
 # template for the changelog body
 # https://keats.github.io/tera/docs/#introduction
 body = """
+{%- macro remote_url() -%}
+  https://github.com/{{ remote.github.owner }}/{{ remote.github.repo }}
+{%- endmacro -%}
+
 {% if version %}\
     ## [{{ version | trim_start_matches(pat="v") }}] - {{ timestamp | date(format="%Y-%m-%d") }}
 {% else %}\
@@ -22,11 +32,26 @@ body = """
 {% for group, commits in commits | group_by(attribute="group") %}
     ### {{ group | striptags | trim | upper_first }}
     {% for commit in commits %}
-        - {% if commit.scope %}*({{ commit.scope }})* {% endif %}\
-            {% if commit.breaking %}[**breaking**] {% endif %}\
-            {{ commit.message | upper_first }}\
+    - {% if commit.scope %}*({{ commit.scope }})* {% endif %}\
+        {% if commit.breaking %}[**breaking**] {% endif %}\
+        {{ commit.message | split(pat="\n") | first | upper_first | trim }}\
+            {% if commit.remote.username %} by [@{{ commit.remote.username }}](https://github.com/{{ commit.remote.username }}){%- endif -%}
+            {% if commit.remote.pr_number %} in \
+            [#{{ commit.remote.pr_number }}]({{ self::remote_url() }}/pull/{{ commit.remote.pr_number }}) \
+            {%- endif -%}
     {% endfor %}
-{% endfor %}\n
+{% endfor %}
+
+{%- if github.contributors | filter(attribute="is_first_time", value=true) | length != 0 %}
+    ### New Contributors
+{%- endif -%}
+
+{% for contributor in github.contributors | filter(attribute="is_first_time", value=true) %}
+    * @{{ contributor.username }} made their first contribution
+    {%- if contributor.pr_number %} in \
+        [#{{ contributor.pr_number }}]({{ self::remote_url() }}/pull/{{ contributor.pr_number }}) \
+    {%- endif %}
+{%- endfor %}\n
 """
 # template for the changelog footer
 footer = """
@@ -36,7 +61,7 @@ footer = """
 trim = true
 # postprocessors
 postprocessors = [
-  # { pattern = '<REPO>', replace = "https://github.com/orhun/git-cliff" }, # replace repository URL
+    # { pattern = '<REPO>', replace = "https://github.com/orhun/git-cliff" }, # replace repository URL
 ]
 
 [bump]
@@ -52,43 +77,45 @@ filter_unconventional = true
 split_commits = false
 # regex for preprocessing the commit messages
 commit_preprocessors = [
-  # Replace issue numbers
-  #{ pattern = '\((\w+\s)?#([0-9]+)\)', replace = "([#${2}](<REPO>/issues/${2}))"},
-  # Check spelling of the commit with https://github.com/crate-ci/typos
-  # If the spelling is incorrect, it will be automatically fixed.
-  #{ pattern = '.*', replace_command = 'typos --write-changes -' },
+    # Replace issue numbers
+    #{ pattern = '\((\w+\s)?#([0-9]+)\)', replace = "([#${2}](<REPO>/issues/${2}))"},
+    # Check spelling of the commit with https://github.com/crate-ci/typos
+    # If the spelling is incorrect, it will be automatically fixed.
+    #{ pattern = '.*', replace_command = 'typos --write-changes -' },
 ]
 # regex for parsing and grouping commits
 commit_parsers = [
-  { message = "^feat", group = "<!-- 0 -->🚀 Features" },
-  { message = "^fix", group = "<!-- 1 -->🐛 Bug Fixes" },
-  { message = "^doc", group = "<!-- 3 -->📚 Documentation" },
-  { message = "^perf", group = "<!-- 4 -->⚡ Performance" },
-  { message = "^refactor", group = "<!-- 2 -->🚜 Refactor" },
-  { message = "^style", group = "<!-- 5 -->🎨 Styling" },
-  { message = "^test", group = "<!-- 6 -->🧪 Testing" },
-  { message = "^chore\\(release.*\\): prepare for", skip = true },
-  { message = "^chore\\(release.*\\): Bump version", skip = true },
-  { message = "^chore\\(deps.*\\)", skip = true },
-  { message = "^chore\\(pr\\)", skip = true },
-  { message = "^chore\\(pull\\)", skip = true },
-  { message = "^chore|^ci", group = "<!-- 7 -->⚙️ Miscellaneous Tasks" },
-  { body = ".*security", group = "<!-- 8 -->🛡️ Security" },
-  { message = "^revert", group = "<!-- 9 -->◀️ Revert" },
+    { message = "^feat", group = "Added" },
+    { message = "^.*: remove", group = "Removed" },
+    { message = "^.*: delete", group = "Removed" },
+    { message = "^fix", group = "Fixed" },
+    { message = "^doc", group = "Documentation" },
+    { message = "^perf", group = "Changed" },
+    { message = "^refactor", group = "Changed" },
+    { message = "^style", group = "Internal" },
+    { message = "^test", group = "Internal" },
+    { message = "^chore\\(release.*\\): prepare for", skip = true },
+    { message = "^chore\\(release.*\\): Bump version", skip = true },
+    { message = "^chore\\(deps.*\\)", skip = true },
+    { message = "^chore\\(pr\\)", skip = true },
+    { message = "^chore\\(pull\\)", skip = true },
+    { message = "^chore|^ci", group = "Internal", skip = true },
+    { body = ".*security", group = "Security" },
+    { message = "^revert", group = "Changed" },
 ]
 # protect breaking changes from being skipped due to matching a skipping commit_parser
 protect_breaking_commits = false
 # filter out the commits that are not matched by commit parsers
 filter_commits = false
 # regex for matching git tags
-# tag_pattern = "v[0-9].*"
+# tag_pattern = "ocr-correction-viklofg-sweocr-v[0-9].*"
 # regex for skipping tags
 # skip_tags = ""
 # regex for ignoring tags
 # ignore_tags = ""
 # sort the tags topologically
-topo_order = false
+topo_order = true
 # sort the commits inside sections by oldest/newest order
-sort_commits = "oldest"
+sort_commits = "newest"
 # limit the number of commits included in the changelog.
 # limit_commits = 42

From 94bbc575bedf46aed31700e296931528f2fed902 Mon Sep 17 00:00:00 2001
From: Kristoffer Andersson <kristoffer.andersson@gu.se>
Date: Thu, 21 Nov 2024 13:33:01 +0100
Subject: [PATCH 29/29] chore(dev-deps): add pytest-cov, ruff and mypy

---
 pyproject.toml |   7 ++-
 uv.lock        | 161 ++++++++++++++++++++++++++++++++++++++++++++++++-
 2 files changed, 166 insertions(+), 2 deletions(-)

diff --git a/pyproject.toml b/pyproject.toml
index 8fa4206..d4a7c71 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -9,4 +9,9 @@ version = "0.0.0"
 members = ["word-prediction-kb-bert"]
 
 [dependency-groups]
-dev = ["pytest>=8.3.3"]
+dev = [
+    "pytest-cov>=6.0.0",
+    "pytest>=8.3.3",
+    "ruff>=0.7.4",
+    "mypy>=1.13.0",
+]
diff --git a/uv.lock b/uv.lock
index bedc64b..ee6454f 100644
--- a/uv.lock
+++ b/uv.lock
@@ -236,6 +236,80 @@ version = "0.0.3"
 source = { registry = "https://pypi.org/simple" }
 sdist = { url = "https://files.pythonhosted.org/packages/bd/df/c9b4e25dce00f6349fd28aadba7b6c3f7431cc8bd4308a158fbe57b6a22e/connection_pool-0.0.3.tar.gz", hash = "sha256:bf429e7aef65921c69b4ed48f3d48d3eac1383b05d2df91884705842d974d0dc", size = 3795 }
 
+[[package]]
+name = "coverage"
+version = "7.6.7"
+source = { registry = "https://pypi.org/simple" }
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 [package.dev-dependencies]
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 name = "stanza"