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posterior_predict errors when supplying a stan_gamm4 binomial model with response specified as cbind(success, failure). The error:
posterior_predict
cbind(success, failure)
Error in cbind(incidence, size - incidence) : object 'incidence' not found
dat <- structure(list(Group = c("b_t", "c_b", "crp", "eqm", "frs", "gro", "mil", "min", "mmi", "mvo", "nmm", "oap", "ocr", "ofd", "omf", "omt", "osd", "p_c", "pcr", "pfb", "sgr", "twl", "vol", "wht", "wol", "wpp"), incidence = c(2, 0, 161, 427, 0, 0, 0, 1, 171, 204, 94, 0, 6, 4, 50, 0, 0, 8, 0, 0, 0, 18, 0, 0, 0, 35), size = c(52814, 17661, 224917, 328780, 1798, 1584, 1686, 7102, 190150, 267264, 60457, 208, 22534, 270418, 236736, 2177, 5830, 1236, 12196, 308, 3665, 105708, 5946, 112, 284, 79895), var1 = c(5245.67753079493, 0.953564060294559, 82343.9289806345, 197659.209119104, 63.2736859428056, 22.4404105569735, 1351.14684575416, 2769.92896596882, 44712.1423586455, 105171.025085931, 7071.26242155988, 119.660910329725, 430.228890875555, 14324.9500484617, 31603.4704954223, 1934.99222081046, 82.3389473082238, 42959.0387724196, 134.618019333429, 9.01855742076216, 349.877180671831, 39542.0596111563, 2196.30701684163, 6.25454990709854, 112.068551483099, 14049.389438344)), class = c("tbl_df", "tbl", "data.frame"), row.names = c(NA, -26L)) mod <-rstanarm::stan_gamm4(cbind(incidence, size - incidence) ~ s(var1), random = ~ (1|Group), data = dat, family = binomial) rstanarm::posterior_predict(mod)
Error message
I think the issue is that the variables in cbind aren't correct in the model data object
names(mod$data) [1] "cbind(incidence, size - incidence)" "var1" "Group" [4] "temp_y"
It is important to note that this error does not occur when random effects are not included in the model.
mod2 <-rstanarm::stan_gamm4(cbind(incidence, size - incidence) ~ s(var1), data = dat, family = binomial) rstanarm::posterior_predict(mod2)
Also note that the model data object in the non-random effect model is correctly specified
names(mod2$data) [1] "Group" "incidence" "size" "var1" "temp_y"
packageVersion("rstanarm") [1] ‘2.21.3’
getRversion() [1] ‘4.2.0’
MacOS 12.5.1
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Summary:
posterior_predict
errors when supplying a stan_gamm4 binomial model with response specified ascbind(success, failure)
.The error:
Reproducible Steps:
Error message
I think the issue is that the variables in cbind aren't correct in the model data object
It is important to note that this error does not occur when random effects are not included in the model.
Also note that the model data object in the non-random effect model is correctly specified
RStanARM Version:
R Version:
Operating System:
MacOS 12.5.1
The text was updated successfully, but these errors were encountered: