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actions/checkout@v3 + - name: Update Rust + run: rustup update stable && rustup default stable + - run: cargo test --all-features --examples + + docs: + runs-on: ubuntu-22.04 + steps: + - uses: actions/checkout@v3 + - name: Update Rust + run: rustup update stable && rustup default stable + - run: cargo doc + + msrv: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v4 + - name: Update Rust + run: rustup update stable && rustup default stable + - name: Install cargo-binstall + run: curl -L --proto '=https' --tlsv1.2 -sSf https://raw.githubusercontent.com/cargo-bins/cargo-binstall/main/install-from-binstall-release.sh | bash + - name: Install cargo-msrv + run: cargo binstall -y --version 0.16.0-beta.23 cargo-msrv + - name: Verify the MSRV + run: cargo msrv verify --output-format minimal --all-features diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..2f7896d --- /dev/null +++ b/.gitignore @@ -0,0 +1 @@ +target/ diff --git a/.rustfmt.toml b/.rustfmt.toml 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a/Cargo.toml b/Cargo.toml new file mode 100644 index 0000000..941af90 --- /dev/null +++ b/Cargo.toml @@ -0,0 +1,63 @@ +[package] +name = "tes" +version = "0.1.0" +edition = "2021" +authors = ["The St. Jude Rust Labs developers"] +license = "MIT OR Apache-2.0" +homepage = "https://github.com/stjude-rust-labs/tes" +repository = "https://github.com/stjude-rust-labs/tes" +rust-version = "1.80.0" + +[dependencies] +anyhow = { version = "1.0.87", optional = true } +chrono = { version = "0.4.38", features = ["serde"] } +ordered-float = { version = "4.2.2", features = ["serde"] } +reqwest = { version = "0.12.7", features = ["json"] } +reqwest-middleware = "0.3.3" +reqwest-retry = "0.6.1" +serde = { version = "1.0.209", features = ["derive"] } +serde_json = "1.0.128" +tokio = { version = "1.40.0", features = ["full", "time"] } +tracing = "0.1.40" +url = { version = "2.5.2", features = ["serde"], optional = true } + +[dev-dependencies] +pretty_assertions = "1.4.0" +tracing-subscriber = { version = "0.3.18", features = ["env-filter"] } + +[features] +default = ["types"] +client = ["dep:anyhow", "types", "dep:url"] +types = ["dep:url"] + +[[example]] +name = "service-info" +required-features = ["client"] + +[[example]] +name = "task-get" +required-features = ["client"] + +[[example]] +name = "task-list-all" +required-features = ["client"] + +[[example]] +name = "task-submit" +required-features = ["client"] + +[lints.rust] +missing_docs = "warn" +nonstandard-style = "warn" +rust-2018-idioms = "warn" +rust-2021-compatibility = "warn" +rust-2024-compatibility = "warn" + +[lints.rustdoc] +broken_intra_doc_links = "warn" + +[lints.clippy] +missing_docs_in_private_items = "warn" + +[package.metadata.docs.rs] +all-features = true diff --git a/LICENSE-APACHE b/LICENSE-APACHE new file mode 100644 index 0000000..0d5b9b2 --- /dev/null +++ b/LICENSE-APACHE @@ -0,0 +1,201 @@ + Apache License + Version 2.0, January 2004 + http://www.apache.org/licenses/ + +TERMS AND CONDITIONS FOR USE, 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IN NO EVENT SHALL THE +AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE +SOFTWARE. diff --git a/README.md b/README.md new file mode 100644 index 0000000..de94a17 --- /dev/null +++ b/README.md @@ -0,0 +1,163 @@ +
+
tes
+ + Explore the docs » · + Learn about TES » +
+ + +## 📚 Getting Started + +The `tes` crate contains types (via the `types` feature) and a simple client +(via the `client` feature) for working with the [Task Execution Service +(TES)][tes-homepage] specification. Briefly, TES is a specification developed to +uniformly submit units of execution ("tasks") to multiple compute environment +through a single HTTP interface. It is of interest mostly when developing +clients or servers that participate in the large-scale submission or monitoring +of jobs. + +To utilize `tes` in your crates, simply add it to your project. + +```bash +# If you want to use the types. +cargo add tes + +# If you also want to use the provided client. +cargo add tes --features client +``` + +After this, you can access the library using the `tes` module in your Rust code. +You can [take a look at the +examples](https://github.com/stjude-rust-labs/tes/tree/main/examples) for +inspiration, but a simple example could look like this. + +```rust +use tes::v1::client; + +#[tokio::main] +async fn main() { + let url = std::env::args().nth(1).expect("url to be present"); + + let client = client::Builder::default() + .url_from_string(url) + .expect("url could not be parsed") + .try_build() + .expect("could not build client"); + + println!( + "{:#?}", + client + .service_info() + .await + .expect("getting service information failed") + ); +} + +``` + +### Minimum Supported Rust Version + +The minimum supported Rust version is currently `1.80.0`. + +There is a CI job that verifies the declared minimum supported version. + +If a contributor submits a PR that uses a feature from a newer version of Rust, +the contributor is responsible for updating the minimum supported version in +the `Cargo.toml`. + +Contributors may update the minimum supported version as-needed to the latest +stable release of Rust. + +To facilitate the discovery of what the minimum supported version should be, +install the `cargo-msrv` tool: + +```bash +cargo install cargo-msrv +``` + +And run the following command: + +```bash +cargo msrv --min 1.80.0 +``` + +If the reported version is newer than the crate's current minimum supported +version, an update is required. + +## 🖥️ Development + +To bootstrap a development environment, please use the following commands. + +```bash +# Clone the repository +git clone git@github.com:stjude-rust-labs/tes.git +cd tes + +# Build the crate in release mode +cargo build --release + +# List out the examples +cargo run --release --example +``` + +## 🚧️ Tests + +Before submitting any pull requests, please make sure the code passes the +following checks (from the root directory). + +```bash +# Run the project's tests. +cargo test --all-features + +# Run the tests for the examples. +cargo test --examples --all-features + +# Ensure the project doesn't have any linting warnings. +cargo clippy --all-features + +# Ensure the project passes `cargo fmt`. +# Currently this requires nightly Rust +cargo +nightly fmt --check + +# Ensure the docs build. +cargo doc +``` + +## 🤝 Contributing + +Contributions, issues and feature requests are welcome! Feel free to check +[issues page](https://github.com/stjude-rust-labs/tes/issues). + +## 📝 License + +This project is licensed as either [Apache 2.0][license-apache] or +[MIT][license-mit] at your discretion. + +Copyright © 2024-Present [St. Jude Children's Research Hospital](https://github.com/stjude). + +[tes-homepage]: https://www.ga4gh.org/product/task-execution-service-tes/ +[license-apache]: https://github.com/stjude-rust-labs/tes/blob/main/LICENSE-APACHE +[license-mit]: https://github.com/stjude-rust-labs/tes/blob/main/LICENSE-MIT diff --git a/docs/FEATURES.md b/docs/FEATURES.md new file mode 100644 index 0000000..5048497 --- /dev/null +++ b/docs/FEATURES.md @@ -0,0 +1,4 @@ +| Feature | Default | Description | +| :----------- | :-----: | :--------------------------------------------------------------- | +| **`client`** | | A simple client that can be used to interact with a TES service. | +| **`types`** | `X` | A representation of all types related to the TES specification. | diff --git a/examples/service-info.rs b/examples/service-info.rs new file mode 100644 index 0000000..9d5ff44 --- /dev/null +++ b/examples/service-info.rs @@ -0,0 +1,39 @@ +//! Gets the descriptive information of the execution service. +//! +//! You can run this with the following command: +//! +//! `TOKEN=