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Error in CreateFragmentObject #2

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Larrycpan opened this issue Aug 4, 2022 · 3 comments
Closed

Error in CreateFragmentObject #2

Larrycpan opened this issue Aug 4, 2022 · 3 comments
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@Larrycpan
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Thanks for the contribution. I run the ArchR2Signac function and get the error
Error in CreateFragmentObject(path = fragments, cells = cells, validate.fragments = validate.fragments, : Fragment file does not exist.
There is only one fragment.tsv.gz in the folder, and I provide the full path to the parameter fragments_dir. How to fix it?
Thanks!

@rootze
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rootze commented Aug 12, 2022

Thanks for the contribution. I run the ArchR2Signac function and get the error Error in CreateFragmentObject(path = fragments, cells = cells, validate.fragments = validate.fragments, : Fragment file does not exist. There is only one fragment.tsv.gz in the folder, and I provide the full path to the parameter fragments_dir. How to fix it? Thanks!

@KeWXiong Thanks for using ArchR2Signac. If this problem is not resolved yet, would you mind providing an example of your fragments_dir? So I can help you figure out the problem! Thank you!

@rootze rootze self-assigned this Aug 12, 2022
@rootze rootze closed this as completed Oct 24, 2022
@rootze rootze reopened this Oct 26, 2022
@rootze
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rootze commented Oct 26, 2022

Hello @KeWXiong
I'm not sure if you are still using this package. But it seems that Issue #3 has a similar problem as you, so I have updated the package to solve the problem. Let me know if you need help with yours. Thank you!

@rootze rootze closed this as not planned Won't fix, can't repro, duplicate, stale Apr 19, 2023
@rootze
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rootze commented Apr 19, 2023

Closed due to lack of response from reporter

@rootze rootze closed this as completed Apr 19, 2023
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