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Add r^2 to results - SumEditor/SumParser #12

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swvanderlaan opened this issue Jul 26, 2018 · 0 comments
Open

Add r^2 to results - SumEditor/SumParser #12

swvanderlaan opened this issue Jul 26, 2018 · 0 comments
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@swvanderlaan
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swvanderlaan commented Jul 26, 2018

When running a QTL analysis - usually in cis with GWAS loci - we should always have the r^2 reported with the GWAS locus.
This is done when CLUMP="Y", but this should be done regardless. It is done using QTLSumEditor.py.
This connects to QTLSumParser.py, as since regular, non-clumped data does not have the r^2 plugged in, the QTLSumParser.py script cannot make the lists of interesting eGenes and eSNPs.

@swvanderlaan swvanderlaan self-assigned this Jul 26, 2018
@swvanderlaan swvanderlaan changed the title Add r^2 to results Add r^2 to results - SumEditor/SumParser Jul 26, 2018
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