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When running a QTL analysis - usually in cis with GWAS loci - we should always have the r^2 reported with the GWAS locus.
This is done when CLUMP="Y", but this should be done regardless. It is done using QTLSumEditor.py.
This connects to QTLSumParser.py, as since regular, non-clumped data does not have the r^2 plugged in, the QTLSumParser.py script cannot make the lists of interesting eGenes and eSNPs.
The text was updated successfully, but these errors were encountered:
When running a QTL analysis - usually in cis with GWAS loci - we should always have the r^2 reported with the GWAS locus.
This is done when
CLUMP="Y"
, but this should be done regardless. It is done usingQTLSumEditor.py
.This connects to
QTLSumParser.py
, as since regular, non-clumped data does not have the r^2 plugged in, theQTLSumParser.py
script cannot make the lists of interesting eGenes and eSNPs.The text was updated successfully, but these errors were encountered: