Using a gRanges object for addtargets()

[lisannemout]

Hi,

I'm trying to provide a GRanges object in the addTargets() function, instead of selecting for a TE based on its repname

The GRanges object looks like this, and is in the same format as the example in ?addTargets().

head(RepeatMasker_L1PB1_g4_gr)
GRanges object with 6 ranges and 2 metadata columns:
seqnames ranges strand | repname te_id
|
[1] chr1 20026982-20028115 - | L1PB1 3
[2] chr1 23991057-23991397 - | L1PB1 4
[3] chr1 61541780-61543701 - | L1PB1 1
[4] chr1 62468379-62470547 + | L1PB1 1
[5] chr1 62739588-62743573 + | L1PB1 1
[6] chr1 62743682-62744050 + | L1PB1 1

seqinfo: 24 sequences from an unspecified genome; no seqlengths

When I try to add the GRanges object to the guideset using the addtarget function i get the following error.

gs <- addTargets(gs,
targets = RepeatMasker_L1PB1_g4_gr)
Error in match(x, table, nomatch = 0L) : 'match' requires vector arguments

Currently using Repguide version 0.0.1.5

Any suggestions on how to resolve this?

Thanks!