run_GWAS_QC_filtering_pipeline.json

{
    "hapmap_info": {
        "path": "/mnt/hapmap_trio_info.txt"
    }, 
    "plink": {
        "path": "/mnt/plink"
    }, 
    "thousand_genomes": {
        "path": "/mnt/new_TGP_vol1_MEGA_flipped_triallelic_removed_no_atgc.bed"
    }
}