@termsurf/vine

A thing visualization library

Articles

• FormView (graphics)
• TalkText (description)
  • English
  • Tune/Tone
• TreeCode
• FormText (math symbols)

/view
/talk
/tree/foo
/form/foo

Goals

• particles: triangle

• atoms: pentagon

• molecules: square

• cells: hexagon

• organisms: circle

• small molecule (small circle)

• protein (large vertical rectangle)

• mitochondrion (larger horizontal rectangle)

• dna (diamond chain of 4)

• rna (circle chain)

• gene (diamond)

• virus (heptagon)

• cell (hexagon)

• bacteria (long thin rectangle)

• phospholipid (head circle with tail rectangle)

• enzyme (square with chunk taken out, like pacman)

• receptor (Y symbol)

• membrane (parallel lines when up close, one long rectangle when further out)

• ribosome (hourglass 8)

• cytoskeleton (4 long thin lines horizontal)

• Golgi Apparatus

• Lysosome (bordered circle)

• nucleus (circle with dot inside)

• Chloroplast (3 stacked rounded rectangles)

• Plasmid (ring)

Math

• centered polygonal numbers

Atoms

1. 1s: 2 electrons
2. 2s: 2 electrons
3. 2p: 6 electrons
4. 3s: 2 electrons
5. 3p: 6 electrons
6. 4s: 2 electrons
7. 3d: 10 electrons
8. 4p: 6 electrons
9. 5s: 2 electrons
10. 4d: 10 electrons
11. 5p: 6 electrons
12. 6s: 2 electrons
13. 4f: 14 electrons
14. 5d: 10 electrons
15. 6p: 6 electrons
16. 7s: 2 electrons
17. 5f: 14 electrons
18. 6d: 10 electrons
19. 7p: 6 electrons

In summary:

• 1st Shell: 2 electrons
• 2nd Shell: 8 electrons
• 3rd Shell: 18 electrons
• 4th Shell: 32 electrons
• 5th Shell: 32 electrons
• 6th Shell: 18 electrons
• 7th Shell: 8 electrons

Periodic Table

• https://perfectperiodictable.com/

Datasets

• Gene Data: https://ftp.ncbi.nlm.nih.gov/genbank/README.genbank
• Signaling Pathway Data: https://reactome.org/download-data
• Protein Interations Data: https://string-db.org/

Installation

pnpm add @termsurf/vine
yarn add @termsurf/vine
npm i @termsurf/vine

Inspiration

• https://github.com/zenorogue/hyperrogue

License

MIT

TermSurf

This is being developed by the folks at TermSurf, a California-based project for helping humanity master information and computation. Find us on Twitter, LinkedIn, and Facebook. Check out our other GitHub projects as well!