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chear.ttl
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@prefix : <http://hadatac.org/ont/chear#> .
@prefix chear: <http://hadatac.org/ont/chear#> .
@prefix dcterms: <http://purl.org/dc/terms/> .
@prefix do: <http://purl.obolibrary.org/obo/DOID_> .
@prefix fma: <http://purl.org/sig/ont/fma/> .
@prefix hasco: <http://hadatac.org/ont/hasco#> .
@prefix ns1: <http://hadatac.org/ont/hasco/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix sio: <http://semanticscience.org/resource/> .
@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
@prefix uberon: <http://purl.obolibrary.org/obo/UBERON_> .
@prefix uo: <http://purl.obolibrary.org/obo/UO_> .
@prefix xml: <http://www.w3.org/XML/1998/namespace> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
<http://hadatac.org/kb/chear#IPT-Questionnaire> a owl:Class ;
rdfs:subClassOf ns1:InstrumentPerspective .
<http://hadatac.org/ont/chear> a owl:Ontology ;
rdfs:comment """Children's health and wellbeing are influenced by interactions between environmental and genetic factors. NIEHS is establishing an infrastructure, the Children's Health Exposure Analysis Resource (CHEAR), to provide the extramural research community access to laboratory and data analyses that add or expand the inclusion of environmental exposures in children's health research. The goal of CHEAR is to provide tools so researchers can assess the full range of environmental exposures which may affect children's health. We anticipate that CHEAR will be used by children's health researchers conducting epidemiological or clinical studies that currently have limited consideration of environmental exposures, or those who have collected exposure data but seek more extensive analyses.
Read more at: https://www.niehs.nih.gov/research/supported/exposure/chear/""" ;
owl:imports <http://hadatac.org/ont/cogat/>,
<http://hadatac.org/ont/hasco/>,
<http://purl.obolibrary.org/obo/cl-basic.owl>,
<http://purl.obolibrary.org/obo/cmo.owl>,
<http://purl.obolibrary.org/obo/stato.owl>,
<http://purl.obolibrary.org/obo/uo.owl>,
<http://semanticscience.org/ontology/sio-subset-labels.owl> ;
owl:versionIRI <http://hadatac.org/ont/chear/2.8> .
<http://hadatac.org/ont/chear#34202> a owl:Class ;
rdfs:label "PCB153" ;
rdfs:subClassOf <http://purl.obolibrary.org/obo/CHEBI_53156> ;
skos:notation "PCB153" .
:AAMA a owl:Class ;
rdfs:label "N-Acetyl-S-(2-carbamoylethyl)-L-cysteine" ;
rdfs:subClassOf <http://purl.obolibrary.org/obo/CHEBI_134179> ;
skos:editorialNote "To Do: align with CHEBI." ;
skos:notation "AAMA" .
:AMA a owl:Class ;
rdfs:label "Mercapturic acids of acrolein and crotonaldehyde" ;
rdfs:subClassOf <http://purl.obolibrary.org/obo/CHEBI_33666> ;
skos:notation "AMA" .
:AMCC a owl:Class ;
rdfs:label "N-Acetyl-S-(N-methylcarbamoyl)-L-cysteine" ;
rdfs:subClassOf <http://purl.obolibrary.org/obo/CHEBI_134179> ;
skos:editorialNote "To Do: align with CHEBI." ;
skos:notation "AMCC" .
:APGAR a ns1:QuantityVariable,
owl:Class ;
rdfs:label "Apgar Score" ;
ns1:wasApprovedBy "chear-kb:PER-Jeanette-Stingone" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:allValuesFrom [ a rdfs:Datatype ;
owl:intersectionOf [ a rdf:List ;
rdf:first [ a rdfs:Datatype ;
owl:onDatatype xsd:integer ;
owl:withRestrictions [ a rdf:List ;
rdf:first [ xsd:minInclusive 0 ] ;
rdf:rest () ] ] ;
rdf:rest [ a rdf:List ;
rdf:first [ a rdfs:Datatype ;
owl:onDatatype xsd:integer ;
owl:withRestrictions [ a rdf:List ;
rdf:first [ xsd:maxInclusive 10 ] ;
rdf:rest () ] ] ;
rdf:rest () ] ] ] ;
owl:onProperty sio:hasValue ],
:BirthOutcome,
sio:Sum ;
skos:definition "A method to quickly summarize the health of newborn children. The Apgar score was invented by Virginia Apgar in 1952 when Apgar was an anesthesiologist who developed the score in order to ascertain the effects of obstetric anesthesia on babies. The Apgar scale is determined by evaluating the newborn baby on five simple criteria on a scale from zero to two, then summing up the five values thus obtained. The resulting Apgar score ranges from zero to 10. The five criteria are summarized using words chosen to form a backronym (Appearance, Pulse, Grimace, Activity, Respiration)." .
:ATCA a owl:Class ;
rdfs:label "2-Aminothiazoline-4-carboxylic acid" ;
rdfs:subClassOf <http://purl.obolibrary.org/obo/CHEBI_134179> ;
skos:editorialNote "To Do: align with CHEBI." ;
skos:notation "ATCA" .
:AbsorbanceReader a owl:Class ;
rdfs:label "Absorbance Reader" ;
ns1:wasApprovedBy "chear-kb:PER-Jim-McCusker" ;
rdfs:subClassOf :MicroplateReader ;
skos:definition "Absorbance readers are used for assays such as ELISA assays, protein and nucleic acid quantification or enzyme activity assays. A light source illuminates the sample using a specific wavelength (selected by an optical filter, or a monochromator), and a light detector located on the other side of the well measures how much of the initial (100%) light is transmitted through the sample: the amount of transmitted light will typically be related to the concentration of the molecule of interest." .
:ActiveNonTobaccoSmoker a ns1:QualityValue,
owl:Class ;
rdfs:label "Active Non-Tobacco Smoker" ;
rdfs:subClassOf :ActiveSmoker ;
skos:definition "Active Non-Tobacco Smoker" ;
skos:notation "1" .
:AdolescentPeriod a owl:Class ;
rdfs:label "Adolescent Period" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:allValuesFrom [ a owl:Class ;
owl:intersectionOf ( sio:Birthing ) ] ;
owl:onProperty sio:inRelationTo ],
:FromBirth,
sio:TimeInterval ;
skos:definition "The age span ranging from adolescence to adulthood" .
:Adopted a owl:Class ;
rdfs:label "Adopted" ;
rdfs:subClassOf :NonBiologicalRelative ;
skos:definition "Adoption is a process whereby a person assumes the parenting of another, usually a child, from that person's biological or legal parent or parents, and, in so doing, permanently transfers all rights and responsibilities, along with filiation, from the biological parent or parents." .
:Adult a ns1:QualityValue,
owl:Class ;
rdfs:label "Adult" ;
ns1:wasApprovedBy "chear-kb:PER-Jeanette-Stingone" ;
rdfs:subClassOf :Demographic,
:DevelopmentalQuality ;
skos:definition "Refers to a person above a threshold age." ;
skos:notation "3" .
:AdvancedDegree a ns1:QualityValue,
owl:Class ;
rdfs:label "Advanced Graduate Degree" ;
rdfs:subClassOf <http://purl.obolibrary.org/obo/ExO_0000041> ;
skos:definition "Having earned a pos-baccalaureate degree" ;
skos:notation "4" .
:Agilent_1100_HPLC a owl:Class ;
rdfs:label "Agilent 1100 HPLC" ;
ns1:wasApprovedBy "chear-kb:PER-Jim-McCusker" ;
rdfs:subClassOf :HPLC .
:Agilent_8800_QQQ_ICP_MS a owl:Class ;
rdfs:label "Aligent 8800 Triple Quadrupole ICP-MS" ;
ns1:wasApprovedBy "chear-kb:PER-Jim-McCusker" ;
rdfs:subClassOf :ICPMSQQQ .
:AnalysisMode a ns1:QualityVariable,
owl:Class ;
rdfs:label "Analysis Mode" ;
rdfs:subClassOf ns1:SampleIndicator ;
skos:definition "Analysis Mode" .
:AtomicAbsorptionSpectroscopy a owl:Class ;
rdfs:label "Atomic Absorption Spectroscopy" ;
rdfs:subClassOf :AtomicSpectroscopy .
:AtomicEmissionSpectroscopy a owl:Class ;
rdfs:label "Atomic Emission Spectroscopy" ;
rdfs:subClassOf :AtomicSpectroscopy .
:BAA1 a owl:Class ;
rdfs:label "1-hydroxybenz[a]anthacene" ;
rdfs:subClassOf <http://purl.obolibrary.org/obo/CHEBI_33666> ;
skos:editorialNote "Only found in one journal article, no where else. Maybe mis-spelled?" ;
skos:notation "BAA1" .
:BAPT a owl:Class ;
rdfs:label "Benzo[a]pyrene tetraol" ;
rdfs:subClassOf <http://purl.obolibrary.org/obo/CHEBI_33666> ;
skos:notation "BAPT" .
:BCP1 a owl:Class ;
rdfs:label "1-hydroxybenzo[c]-phenanthrene" ;
rdfs:subClassOf <http://purl.obolibrary.org/obo/CHEBI_33666> ;
skos:notation "BCP1" .
:BCP2 a owl:Class ;
rdfs:label "2-hydroxybenzo[c]-phenanthrene" ;
rdfs:subClassOf <http://purl.obolibrary.org/obo/CHEBI_33666> ;
skos:notation "BCP2" .
:BCP3 a owl:Class ;
rdfs:label "3-hydroxybenzo[c]-phenanthrene" ;
rdfs:subClassOf <http://purl.obolibrary.org/obo/CHEBI_33666> ;
skos:notation "BCP3" .
:BDE100 a owl:Class ;
rdfs:label "2,2',4,4',6-Pentabromodiphenyl ether" ;
rdfs:subClassOf <http://purl.obolibrary.org/obo/CHEBI_134094> ;
skos:editorialNote "To Do: align with CHEBI." ;
skos:notation "BDE100" .
:BDE153 a owl:Class ;
rdfs:label "2,2',4,4',5,5'-Hexabromodiphenyl ether" ;
rdfs:subClassOf <http://purl.obolibrary.org/obo/CHEBI_134094> ;
skos:editorialNote "To Do: align with CHEBI." ;
skos:notation "BDE153" .
:BDE154 a owl:Class ;
rdfs:label "2,2',4,4',5,6'-Hexabromodiphenyl ether" ;
rdfs:subClassOf <http://purl.obolibrary.org/obo/CHEBI_134094> ;
skos:editorialNote "To Do: align with CHEBI." ;
skos:notation "BDE154" .
:BDE17 a owl:Class ;
rdfs:label "2,2',4'-Tribromodiphenyl ether" ;
rdfs:subClassOf <http://purl.obolibrary.org/obo/CHEBI_134094> ;
skos:editorialNote "To Do: align with CHEBI." ;
skos:notation "BDE17" .
:BDE183 a owl:Class ;
rdfs:label "2,2',3,4,4',5',6-Heptabromodiphenyl ether" ;
rdfs:subClassOf <http://purl.obolibrary.org/obo/CHEBI_134094> ;
skos:editorialNote "To Do: align with CHEBI." ;
skos:notation "BDE183" .
:BDE209 a owl:Class ;
rdfs:label "2,2',3,3',4,4',5,5',6,6'-Decabromodiphenyl ether" ;
rdfs:subClassOf <http://purl.obolibrary.org/obo/CHEBI_134094> ;
skos:editorialNote "To Do: align with CHEBI." ;
skos:notation "BDE209" .
:BDE28 a owl:Class ;
rdfs:label "2,4,4'-Tribromodiphenyl ether" ;
rdfs:subClassOf <http://purl.obolibrary.org/obo/CHEBI_134094> ;
skos:editorialNote "To Do: align with CHEBI." ;
skos:notation "BDE28" .
:BDE47 a owl:Class ;
rdfs:label "2,2',4,4'-Tetrabromodiphenyl ether" ;
rdfs:subClassOf <http://purl.obolibrary.org/obo/CHEBI_134094> ;
skos:editorialNote "To Do: align with CHEBI." ;
skos:notation "BDE47" .
:BDE66 a owl:Class ;
rdfs:label "2,3',4,4'-Tetrabromodiphenyl ether" ;
rdfs:subClassOf <http://purl.obolibrary.org/obo/CHEBI_134094> ;
skos:editorialNote "To Do: align with CHEBI." ;
skos:notation "BDE66" .
:BDE85 a owl:Class ;
rdfs:label "2,2',3,4,4'-Pentabromodiphenyl ether" ;
rdfs:subClassOf <http://purl.obolibrary.org/obo/CHEBI_134094> ;
skos:editorialNote "To Do: align with CHEBI." ;
skos:notation "BDE85" .
:BDE99 a owl:Class ;
rdfs:label "2,2',4,4',5-Pentabromodiphenyl ether" ;
rdfs:subClassOf <http://purl.obolibrary.org/obo/CHEBI_134094> ;
skos:editorialNote "To Do: align with CHEBI." ;
skos:notation "BDE99" .
:BIRD-MS a owl:Class ;
rdfs:label "Blackbody Infrared Radiative Dissociation (BIRD)" ;
rdfs:subClassOf ns1:TandemMassSpectrometry .
:BMA a owl:Class ;
rdfs:label "N-Acetyl-S-(benzyl)-L-cysteine" ;
rdfs:subClassOf <http://purl.obolibrary.org/obo/CHEBI_134179> ;
skos:editorialNote "To Do: align with CHEBI." ;
skos:notation "BMA" .
:BP3 a owl:Class ;
rdfs:label "Benzophenone-3" ;
rdfs:subClassOf <http://purl.obolibrary.org/obo/CHEBI_15882> ;
skos:definition "Oxybenzone is a benzophenone derivative used as a sunscreen agent. Oxybenzone absorbs UVB and UVA II rays, resulting in a photochemical excitation and absorption of energy. Upon return to ground state, the absorbed energy results in emission of longer wavelength radiation and decreased skin penetration of radiation which reduces the risk of DNA damage." ;
skos:editorialNote "Duplicate of OXB?" ;
skos:notation "BP3" .
:BPMA a owl:Class ;
rdfs:label "N-Acetyl-S-(n-propyl)-L-cysteine" ;
rdfs:subClassOf <http://purl.obolibrary.org/obo/CHEBI_134179> ;
skos:editorialNote "To Do: align with CHEBI." ;
skos:notation "BPMA" .
:BRIEF_pschl a owl:Class ;
rdfs:label "Behavior Rating Inventory of Executive Function – Preschool Version" ;
rdfs:subClassOf :NeurocognitiveAssessent ;
skos:definition "Standardized rating scale designed to specifically measure the range of executive function in preschool-aged children" .
:BathroomCount a ns1:QuantityVariable,
owl:Class ;
rdfs:label "Bathroom Count" ;
ns1:wasApprovedBy "chear-kb:PER-Jeanette-Stingone" ;
rdfs:subClassOf :RoomCount ;
skos:definition "Total Number of Bathrooms in the Home" .
:BedroomCount a ns1:QuantityVariable,
owl:Class ;
rdfs:label "Bedroom Count" ;
ns1:wasApprovedBy "chear-kb:PER-Jeanette-Stingone" ;
rdfs:subClassOf :RoomCount ;
skos:definition "Total Number of Bedrooms in the Home" .
:Before a owl:Class ;
rdfs:label "Before" ;
rdfs:subClassOf :RelativeTime ;
skos:definition "A negative index of a time measurement in relation to a reference event. A conventional time measurement can be generated from a before time measurement by duplicating the measurement, reversing the sign of the value, and removing the \"Before\" class." .
:BiologicalRelative a owl:Class ;
rdfs:label "Biological Relative" ;
rdfs:subClassOf :Relative ;
skos:definition "Being from the same biological kinship as another person. In that aspect, consanguinity is the quality of being descended from the same ancestor as another person." .
:BirthCohortStudy a owl:Class ;
rdfs:label "Birth Cohort Study" ;
rdfs:subClassOf ns1:CohortStudy .
:BisulfitePyrosequencing a owl:Class ;
rdfs:label "Bisulfite Pyrosequencing" ;
rdfs:subClassOf :NucleicAcidSequencing .
:BoilerCount a ns1:QuantityVariable,
owl:Class ;
rdfs:label "Boiler Count" ;
ns1:wasApprovedBy "chear-kb:PER-Jeanette-Stingone" ;
rdfs:subClassOf :HouseholdApplianceCount ;
skos:definition "A boiler is an object that heats up water. This attribute quantifies the number of boilers in the home." .
:BuccalCell a owl:Class ;
rdfs:label "Buccal Cell" ;
dcterms:identifier "BU" ;
rdfs:subClassOf sio:Cell ;
skos:definition "Cells collected from the inner epithelium of the cheek" .
:CBCL_pschl a owl:Class ;
rdfs:label "Preschool Child Behavior Checklist" ;
rdfs:subClassOf :NeurocognitiveAssessent ;
skos:definition "Child Behavior Checklist for ages 1 ½ through 5" .
:CBCLpschl_external a owl:Class ;
rdfs:label "Preschool Child Behavior Checklist Externalizing Subscale" ;
rdfs:subClassOf :NeurocognitiveAssessent ;
skos:definition "Subscale of preschool CBCL that assesses externalizing behaviors" .
:CBCLpschl_internal a owl:Class ;
rdfs:label "Preschool Child Behavior Checklist Internalizing Subscale" ;
rdfs:subClassOf :NeurocognitiveAssessent ;
skos:definition "Subscale of preschool CBCL that assesses internalizing behaviors" .
:CEMA a owl:Class ;
rdfs:label "N-Acetyl-S- (2-carboxyethyl)-L-cysteine" ;
rdfs:subClassOf <http://purl.obolibrary.org/obo/CHEBI_134179> ;
skos:editorialNote "To Do: align with CHEBI." ;
skos:notation "CEMA" .
:CHRY3 a owl:Class ;
rdfs:label "3-hydroxychrysene" ;
rdfs:subClassOf <http://purl.obolibrary.org/obo/CHEBI_33666> ;
skos:notation "CHRY3" .
:CID-MS a owl:Class ;
rdfs:label "Collision-Induced Dissociation (CID)" ;
rdfs:subClassOf ns1:TandemMassSpectrometry .
:COTT a owl:Class ;
rdfs:label "Cotinine (total)" ;
rdfs:subClassOf :TobaccoMetabolite ;
skos:editorialNote "To Do: align with CHEBI." ;
skos:notation "COTT" .
:CVAFSInstrument a owl:Class ;
rdfs:label "Cold Vapor Atomic Fluorescence Spectroscopy Instrument" ;
ns1:wasApprovedBy "chear-kb:PER-Jim-McCusker" ;
rdfs:subClassOf :AFSInstrument ;
skos:definition "Used in the measurement of trace amounts of volatile heavy metals such as mercury, cold vapour AFS makes use of the unique characteristic of mercury that allows vapour measurement at room temperature." .
:CYMA a owl:Class ;
rdfs:label "N-Acetyl-S-(2-cyanoethyl)-L-cysteine" ;
rdfs:subClassOf <http://purl.obolibrary.org/obo/CHEBI_134179> ;
skos:editorialNote "To Do: align with CHEBI." ;
skos:notation "CYMA" .
:CannedFoodConsumption a ns1:QualityValue,
owl:Class ;
rdfs:label "Canned Food Consumption" ;
ns1:wasApprovedBy "chear-kb:PER-Jeanette-Stingone" ;
rdfs:subClassOf :CannedFoodFrequency ;
skos:definition "Whether or not canned food is consumed." ;
skos:notation "9" .
:CarCount a ns1:QuantityVariable,
owl:Class ;
rdfs:label "Car Count" ;
rdfs:subClassOf :HousingCharacteristic,
sio:Count ;
skos:definition "Total Number of Cars in the Home" ;
skos:editorialNote "Again, this isn't related to physical properties of housing. This is more closely related to Socioeconomic Status. Consider moving it." .
:CementFloor a ns1:QualityValue,
owl:Class ;
rdfs:label "Cement Floor" ;
ns1:wasApprovedBy "chear-kb:PER-Jeanette-Stingone" ;
rdfs:subClassOf :FloorType ;
skos:definition "Cement Floor Type" ;
skos:notation "10" .
:ChildhoodCohortStudy a owl:Class ;
rdfs:label "Childhood Cohort Study" ;
rdfs:subClassOf ns1:CohortStudy .
:ChildhoodPeriod a owl:Class ;
rdfs:label "Childhood Period" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:allValuesFrom [ a owl:Class ;
owl:intersectionOf ( sio:Birthing ) ] ;
owl:onProperty sio:inRelationTo ],
:FromBirth,
sio:TimeInterval ;
skos:definition "The age span ranging from birth to adolescence" .
:ClaussClottingMethod a owl:Class ;
rdfs:label "Fibrinogen Assay (Clauss method)" ;
rdfs:subClassOf sio:Assay .
:CollectionDate a ns1:QuantityVariable,
owl:Class ;
rdfs:label "Collection Date of Sample" ;
ns1:wasApprovedBy "chear-kb:PER-Jeanette-Stingone" ;
rdfs:subClassOf sio:TimeInterval ;
skos:definition "Collection Date of Sample" .
:CollegeGraduate a ns1:QualityValue,
owl:Class ;
rdfs:label "College Graduate" ;
ns1:wasApprovedBy "chear-kb:PER-Jeanette-Stingone" ;
rdfs:subClassOf <ontoad:C0424933> ;
skos:definition "The quality of having graduated from College" ;
skos:notation "12" .
:ColorObjectAssocTest a owl:Class ;
rdfs:label "Color Object Association Test" ;
rdfs:subClassOf :NeurocognitiveAssessent ;
skos:definition "a reliable and a valid measure of declarative memory for healthy children ages 18-36 months, living in a disadvantaged community" .
:ColorimetricAssay a owl:Class ;
rdfs:label "Colorimetric Assay" ;
rdfs:subClassOf sio:Assay .
:Comment_0 a owl:Class ;
rdfs:label "valid measurement" ;
rdfs:subClassOf sio:Comment .
:Comment_1 a owl:Class ;
rdfs:label "Slightly hemolyzed" ;
rdfs:subClassOf sio:Comment .
:Comment_10 a owl:Class ;
rdfs:label "Cellular debris present" ;
rdfs:subClassOf sio:Comment .
:Comment_104 a owl:Class ;
rdfs:label "Detectable" ;
rdfs:subClassOf sio:Comment .
:Comment_11 a owl:Class ;
rdfs:label "Small clot present" ;
rdfs:subClassOf sio:Comment .
:Comment_114 a owl:Class ;
rdfs:label "Result reported based on fewer replicates than required" ;
rdfs:subClassOf sio:Comment .
:Comment_115 a owl:Class ;
rdfs:label "Specimen analyzed with less than usual dilution" ;
rdfs:subClassOf sio:Comment .
:Comment_12 a owl:Class ;
rdfs:label "Run out-of-contol; insufficient sample for repeat analysis" ;
rdfs:subClassOf sio:Comment .
:Comment_122 a owl:Class ;
rdfs:label "Samples Arrived Thawed and Analyzed" ;
rdfs:subClassOf sio:Comment .
:Comment_124 a owl:Class ;
rdfs:label "HUC sample having discrepancy between fluorometer results and semi quantative Albustix test results" ;
rdfs:subClassOf sio:Comment .
:Comment_128 a owl:Class ;
rdfs:label "No preservative added" ;
rdfs:subClassOf sio:Comment .
:Comment_129 a owl:Class ;
rdfs:label "Irregular result, no concentration reported" ;
rdfs:subClassOf sio:Comment .
:Comment_13 a owl:Class ;
rdfs:label "Fibrin present" ;
rdfs:subClassOf sio:Comment .
:Comment_130 a owl:Class ;
rdfs:label "Value above LOD but below LLOQ" ;
rdfs:subClassOf sio:Comment .
:Comment_131 a owl:Class ;
rdfs:label "Value greater than ULOQ" ;
rdfs:subClassOf sio:Comment .
:Comment_14 a owl:Class ;
rdfs:label "Red blood cells present" ;
rdfs:subClassOf sio:Comment .
:Comment_15 a owl:Class ;
rdfs:label "Interfering substances present" ;
rdfs:subClassOf sio:Comment .
:Comment_16 a owl:Class ;
rdfs:label "Urine grossly hematuric" ;
rdfs:subClassOf sio:Comment .
:Comment_17 a owl:Class ;
rdfs:label "quantity of sample insufficient for analysis" ;
rdfs:subClassOf sio:Comment .
:Comment_18 a owl:Class ;
rdfs:label "Quantity of sample insufficient for repeat analysis" ;
rdfs:subClassOf sio:Comment .
:Comment_19 a owl:Class ;
rdfs:label "Sample integrity/quality compromised preventing analysis" ;
rdfs:subClassOf sio:Comment .
:Comment_199 a owl:Class ;
rdfs:label "Value below LLOQ, no LOD provided" ;
rdfs:subClassOf sio:Comment .
:Comment_2 a owl:Class ;
rdfs:label "Moderately hemolyzed" ;
rdfs:subClassOf sio:Comment .
:Comment_200 a owl:Class ;
rdfs:label "Valid measurement, results repeated and confirmed (0,33)" ;
rdfs:subClassOf sio:Comment .
:Comment_201 a owl:Class ;
rdfs:label "Below LOD, results repeated and confirmed (37,33)" ;
rdfs:subClassOf sio:Comment .
:Comment_210 a owl:Class ;
rdfs:label "Initial concentration higher than the highest standard, insufficient volume for repeat analysis (93, 18)" ;
rdfs:subClassOf sio:Comment .
:Comment_29 a owl:Class ;
rdfs:label "Sample older than 2 weeks" ;
rdfs:subClassOf sio:Comment .
:Comment_3 a owl:Class ;
rdfs:label "Markedly hemolyzed" ;
rdfs:subClassOf sio:Comment .
:Comment_31 a owl:Class ;
rdfs:label "Cyclomicrons present" ;
rdfs:subClassOf sio:Comment .
:Comment_32 a owl:Class ;
rdfs:label "Dilution required" ;
rdfs:subClassOf sio:Comment .
:Comment_33 a owl:Class ;
rdfs:label "Result repeated and confirmed" ;
rdfs:subClassOf sio:Comment .
:Comment_34 a owl:Class ;
rdfs:label "Unusually high" ;
rdfs:subClassOf sio:Comment .
:Comment_35 a owl:Class ;
rdfs:label "Unusual color" ;
rdfs:subClassOf sio:Comment .
:Comment_37 a owl:Class ;
rdfs:label "Value less than LOD" ;
rdfs:subClassOf sio:Comment .
:Comment_38 a owl:Class ;
rdfs:label "Analyzed at a later date than rest of samples on worksheet (not a repeat)" ;
rdfs:subClassOf sio:Comment .
:Comment_39 a owl:Class ;
rdfs:label "Short sample; sample probe picked up incomplete volume first time" ;
rdfs:subClassOf sio:Comment .
:Comment_4 a owl:Class ;
rdfs:label "Icteric" ;
rdfs:subClassOf sio:Comment .
:Comment_49 a owl:Class ;
rdfs:label "thawed and clotted" ;
rdfs:subClassOf sio:Comment .
:Comment_5 a owl:Class ;
rdfs:label "Turbid" ;
rdfs:subClassOf sio:Comment .
:Comment_50 a owl:Class ;
rdfs:label "thawed and hemolyzed (covers all three levels)" ;
rdfs:subClassOf sio:Comment .
:Comment_51 a owl:Class ;
rdfs:label "thawed, hemolyzed (covers all three levels) and exposed to light" ;
rdfs:subClassOf sio:Comment .
:Comment_53 a owl:Class ;
rdfs:label "Hemolyzed (covers all three levels), lipemic, and icteric" ;
rdfs:subClassOf sio:Comment .
:Comment_54 a owl:Class ;
rdfs:label "Hemolyzed (covers all three levels) and contaminated" ;
rdfs:subClassOf sio:Comment .
:Comment_55 a owl:Class ;
rdfs:label "Hemolyzed (covers all three levels) and debris present" ;
rdfs:subClassOf sio:Comment .
:Comment_56 a owl:Class ;
rdfs:label "Hemolyzed (covers all three levels) and lipemic" ;
rdfs:subClassOf sio:Comment .
:Comment_57 a owl:Class ;
rdfs:label "Lab confirmed result" ;
rdfs:subClassOf sio:Comment .
:Comment_58 a owl:Class ;
rdfs:label "did not precipitate" ;
rdfs:subClassOf sio:Comment .
:Comment_59 a owl:Class ;
rdfs:label "Lipemic and turbid" ;
rdfs:subClassOf sio:Comment .
:Comment_6 a owl:Class ;
rdfs:label "Very turbid" ;
rdfs:subClassOf sio:Comment .
:Comment_62 a owl:Class ;
rdfs:label "Sample frozen" ;
rdfs:subClassOf sio:Comment .
:Comment_63 a owl:Class ;
rdfs:label "No Hct, Hct=40 assumed" ;
rdfs:subClassOf sio:Comment .
:Comment_7 a owl:Class ;
rdfs:label "Lipemic" ;
rdfs:subClassOf sio:Comment .
:Comment_73 a owl:Class ;
rdfs:label "Panel change" ;
rdfs:subClassOf sio:Comment .
:Comment_78 a owl:Class ;
rdfs:label "Failed negative control" ;
rdfs:subClassOf sio:Comment .
:Comment_79 a owl:Class ;
rdfs:label "Failed positive control" ;
rdfs:subClassOf sio:Comment .
:Comment_8 a owl:Class ;
rdfs:label "Lipemic sample, clarified before running" ;
rdfs:subClassOf sio:Comment .
:Comment_82 a owl:Class ;
rdfs:label "Partial match" ;
rdfs:subClassOf sio:Comment .
:Comment_84 a owl:Class ;
rdfs:label "Greater than 99th percentile" ;
rdfs:subClassOf sio:Comment .
:Comment_85 a owl:Class ;
rdfs:label "Mitest not capped" ;
rdfs:subClassOf sio:Comment .
:Comment_86 a owl:Class ;
rdfs:label "Torn, perforated screen" ;
rdfs:subClassOf sio:Comment .
:Comment_87 a owl:Class ;
rdfs:label "Broken Mitest" ;
rdfs:subClassOf sio:Comment .
:Comment_88 a owl:Class ;
rdfs:label "Torn bag (Mitest intact, capped)" ;
rdfs:subClassOf sio:Comment .
:Comment_89 a owl:Class ;
rdfs:label "Overloaded filter" ;
rdfs:subClassOf sio:Comment .
:Comment_90 a owl:Class ;
rdfs:label "Abnormal hemoglobin variant observed" ;
rdfs:subClassOf sio:Comment .
:Comment_91 a owl:Class ;
rdfs:label "Obvious coarse debris" ;
rdfs:subClassOf sio:Comment .
:Comment_92 a owl:Class ;
rdfs:label "Predominantly fibrous material" ;
rdfs:subClassOf sio:Comment .
:Comment_93 a owl:Class ;
rdfs:label "Initial concentration higher than the highest standard" ;
rdfs:subClassOf sio:Comment .
:Comment_94 a owl:Class ;
rdfs:label "Specimen analyzed with less than normal quantity" ;
rdfs:subClassOf sio:Comment .
:Comment_95 a owl:Class ;
rdfs:label "Specimen analyzed in singlicate for an assay that requires duplicates" ;
rdfs:subClassOf sio:Comment .
:Comment_96 a owl:Class ;
rdfs:label "No FOL result; FOL = 8 ng/mL assumed" ;
rdfs:subClassOf sio:Comment .
:Comment_97 a owl:Class ;
rdfs:label "Result repeated with diluted sample" ;
rdfs:subClassOf sio:Comment .
:CommonEra a owl:Class ;
rdfs:label "Common Era" ;
rdfs:subClassOf :RelativeTime ;
owl:equivalentClass [ a owl:Restriction ;
owl:hasValue <http://dbpedia.org/resource/CE_1> ;
owl:onProperty sio:inRelationTo ] ;
skos:definition "Common era time measurements are referenced against (in relation to) the beginning of the common era, 1 CE (or 1 AD)." .
:CompetitiveELISA a owl:Class ;
rdfs:label "Competitive-inhibition enzyme-linked immunosorbent assay" ;
rdfs:subClassOf :ELISA .
:CompetitiveImmunoassay a owl:Class ;
rdfs:label "Competitive Immunoassay" ;
rdfs:subClassOf ns1:Immunoassay .
:ComputerCount a ns1:QuantityVariable,
owl:Class ;
rdfs:label "Computer" ;
ns1:wasApprovedBy "chear-kb:PER-Jeanette-Stingone" ;
rdfs:subClassOf :HouseholdApplianceCount ;
skos:definition "A machine used for computation and much more." .
:Conception a owl:Class ;
rdfs:label "Conception" ;
ns1:wasApprovedBy "chear-kb:PER-Jeanette-Stingone" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:allValuesFrom [ a owl:Class ;
owl:intersectionOf ( :Conceiving ) ] ;
owl:onProperty sio:inRelationTo ],
:Beginning,
:FromConception,
sio:TimeInterval ;
skos:definition "When a sperm fertilizes an egg" .
:ConsumedAlcohol a ns1:QualityValue,
owl:Class ;
rdfs:label "Consumed Alcohol" ;
rdfs:subClassOf :AlcoholUse ;
skos:notation "52" .
:Cousin a owl:Class ;
rdfs:label "Cousin" ;
rdfs:subClassOf :Relative ;
skos:definition "A person belonging to the same extended family." .
:DCVMA12 a owl:Class ;
rdfs:label "N-Acetyl-S-(1,2-dichlorovinyl)-L-cysteine" ;
rdfs:subClassOf <http://purl.obolibrary.org/obo/CHEBI_134179> ;
skos:editorialNote "To Do: align with CHEBI." ;
skos:notation "DCVMA12" .
:DCVMA22 a owl:Class ;
rdfs:label "N-Acetyl-S-(2,2-dichlorovinyl)-L-cysteine" ;
rdfs:subClassOf <http://purl.obolibrary.org/obo/CHEBI_134179> ;
skos:editorialNote "To Do: align with CHEBI." ;
skos:notation "DCVMA22" .
:DEDP a owl:Class ;
rdfs:label "diethyldithiophosphate" ;
rdfs:subClassOf :AlkylPhosphatePesticideMetabolite ;
skos:editorialNote "To Do: align with CHEBI." ;
skos:notation "DEDP" .
:DEP a owl:Class ;
rdfs:label "diethylphosphate" ;
rdfs:subClassOf :AlkylPhosphatePesticideMetabolite ;
skos:editorialNote "To Do: align with CHEBI." ;
skos:notation "DEP" .
:DETP a owl:Class ;
rdfs:label "diethylthiophosphate" ;
rdfs:subClassOf :AlkylPhosphatePesticideMetabolite ;
skos:editorialNote "To Do: align with CHEBI." ;
skos:notation "DETP" .
:DHBMA a owl:Class ;
rdfs:label "N-Acetyl-S- (3,4-dihydroxybutyl)-L-cysteine" ;
rdfs:subClassOf <http://purl.obolibrary.org/obo/CHEBI_134179> ;
skos:editorialNote "To Do: align with CHEBI." ;
skos:notation "DHBMA" .
:DMDP a owl:Class ;
rdfs:label "dimethyldithiophosphate" ;
rdfs:subClassOf :AlkylPhosphatePesticideMetabolite ;
skos:editorialNote "To Do: align with CHEBI." ;
skos:notation "DMDP" .
:DMP a owl:Class ;
rdfs:label "dimethylphosphate" ;
rdfs:subClassOf :AlkylPhosphatePesticideMetabolite ;
skos:editorialNote "To Do: align with CHEBI." ;
skos:notation "DMP" .
:DMTP a owl:Class ;
rdfs:label "dimethylthiophosphate" ;
rdfs:subClassOf :AlkylPhosphatePesticideMetabolite ;
skos:editorialNote "To Do: align with CHEBI." ;
skos:notation "DMTP" .
:DPMA a owl:Class ;
rdfs:label "N-Acetyl-S-(2,4-dimethylphenyl)-L-cysteine + N-Acetyl-S-(2,5-dimethylphenyl)-L-cysteine + N-Acetyl-S-(3,4-dimethylphenyl)-L-cysteine" ;
rdfs:subClassOf <http://purl.obolibrary.org/obo/CHEBI_134179> ;
skos:editorialNote "To Do: align with CHEBI." ;
skos:notation "DPMA" .
:DVDPlayerCount a ns1:QuantityVariable,
owl:Class ;
rdfs:label "DVD Player Count" ;
ns1:wasApprovedBy "chear-kb:PER-Jeanette-Stingone" ;
rdfs:subClassOf :HouseholdApplianceCount ;
skos:definition "Number of devices in the home that play DVDs." .
:DateOfBirth a ns1:QuantityVariable,
owl:Class ;
rdfs:label "Date of Birth" ;
ns1:wasApprovedBy "chear-kb:PER-Jeanette-Stingone" ;
rdfs:subClassOf :Demographic,
sio:TimeInterval ;
skos:definition "Date of day on which a person was born." .
:Daughter a owl:Class ;
rdfs:label "Daughter" ;
rdfs:subClassOf [ a owl:Restriction ;
owl:allValuesFrom [ a owl:Restriction ;
owl:onProperty sio:hasAttribute ;
owl:someValuesFrom sio:Female ] ;
owl:onProperty sio:isRoleOf ],
:Child ;
skos:definition "The female offspring in relation to her parents." .
:DentalFillings a ns1:QualityValue,
owl:Class ;
rdfs:label "Dental Fillings" ;
rdfs:subClassOf :OralHealth ;
skos:notation "13" .
:DidNotConsumeAlcohol a ns1:QualityValue,
owl:Class ;
rdfs:label "Did Not Consume Alcohol" ;
rdfs:subClassOf :AlcoholUse ;
skos:notation "53" .
:DietTreatment a ns1:QualityValue,
owl:Class ;
rdfs:label "Diet Treatment Medical Therapy" ;
ns1:wasApprovedBy "chear-kb:PER-Jeanette-Stingone" ;
rdfs:subClassOf :MedicalTherapy ;
skos:definition "Diet Treatment is a form of Medical Therapy." ;
skos:notation "26" .
:Difference a owl:Class ;
rdfs:label "Difference" ;
rdfs:subClassOf sio:Quantity ;
skos:definition "Variables derived from taking the difference of two other variables. For example, the first difference of a time series {yt} is defined as Dyt = yt - yt-1" .
:DrugHistory a ns1:QualityVariable,
owl:Class ;
rdfs:label "Drug History" ;
rdfs:subClassOf :ATIDU ;
skos:notation "14" .
:ECD-MS a owl:Class ;
rdfs:label "Electron Capture Dissociation (ECD)" ;
rdfs:subClassOf ns1:TandemMassSpectrometry .
:EDD-MS a owl:Class ;
rdfs:label "Electron-Detachment Dissociation (EDD)" ;
rdfs:subClassOf ns1:TandemMassSpectrometry .
:EIA a owl:Class ;
rdfs:label "Enzyme Immunoassay" ;
rdfs:subClassOf ns1:Immunoassay .
:ETD-MS a owl:Class ;
rdfs:label "Electron Transfer Dissociation (ETD)" ;
rdfs:subClassOf ns1:TandemMassSpectrometry .
:EarlyChildVigTest a owl:Class ;
rdfs:label "Early Childhood Vigilance Test" ;
rdfs:subClassOf :NeurocognitiveAssessent ;
skos:definition "a computer-based assessment of sustained attention during which the child is required to watch a screen where various animated stimuli disappear and reappear" .
:EducationGrade1 a ns1:QualityValue,
owl:Class ;
rdfs:label "Education Grade 1" ;
rdfs:subClassOf :SomeElementarySchool ;
skos:definition "Finished grade 1" ;
skos:notation "113" .
:EducationGrade2 a ns1:QualityValue,
owl:Class ;
rdfs:label "Education Grade 2" ;
rdfs:subClassOf :SomeElementarySchool ;
skos:definition "Finished grade 2" ;
skos:notation "114" .
:EducationGrade3 a ns1:QualityValue,
owl:Class ;
rdfs:label "Education Grade 3" ;
rdfs:subClassOf :SomeElementarySchool ;
skos:definition "Finished grade 3" ;
skos:notation "115" .
:EducationGrade4 a ns1:QualityValue,
owl:Class ;
rdfs:label "Education Grade 4" ;
rdfs:subClassOf :ElementarySchool ;
skos:definition "Finished grade 4" ;
skos:notation "116" .
:EducationGrade5 a ns1:QualityValue,
owl:Class ;
rdfs:label "Education Grade 5" ;
rdfs:subClassOf :SomeMiddleSchool ;
skos:definition "Finished grade 5" ;
skos:notation "117" .
:EducationGrade6 a ns1:QualityValue,
owl:Class ;
rdfs:label "Education Grade 6" ;
rdfs:subClassOf :SomeMiddleSchool ;
skos:definition "Finished grade 6" ;
skos:notation "118" .
:EducationGrade7 a ns1:QualityValue,
owl:Class ;
rdfs:label "Education Grade 7" ;
rdfs:subClassOf :SomeMiddleSchool ;
skos:definition "Finished grade 7" ;
skos:notation "119" .
:ElectiveCaesarianSection a ns1:QualityValue,
owl:Class ;
rdfs:label "Elective Caesarian Section" ;
rdfs:subClassOf :CaesareanSection ;
skos:definition "A caesarian section that was chosen by the mother but was not medically necessary." ;
skos:notation "19" .
:EoEActive a owl:Class ;
rdfs:label "active eosinophilic esophagitis" ;
rdfs:comment "Eosinophilic esophagitis is active when a biopsy of the esophagus reveals a count of more than 25 eosinophils per high-power field area, or 0.158 mm^2 (400x)." ;
rdfs:subClassOf <http://purl.obolibrary.org/obo/DOID_13922> ;
owl:equivalentClass [ a owl:Restriction ;
owl:allValuesFrom [ a owl:Class ;
owl:intersectionOf ( <http://purl.obolibrary.org/obo/UBERON_0001043> [ a owl:Restriction ;
owl:onProperty sio:hasAttribute ;
owl:someValuesFrom [ a owl:Class ;
owl:intersectionOf ( :EOPerHPF [ a owl:Restriction ;
owl:allValuesFrom [ a rdfs:Datatype ;
owl:onDatatype xsd:integer ;
owl:withRestrictions ( [ xsd:minExclusive 25 ] ) ] ;
owl:onProperty sio:hasValue ] ) ] ] ) ] ;
owl:onProperty sio:isPhenotypeOf ] .
:EoEMild a owl:Class ;
rdfs:label "mild eosinophilic esophagitis" ;
rdfs:comment "Eosinophilic esophagitis is mild when a biopsy of the esophagus reveals a count of 15-25 eosinophils per high-power field area, or 0.158 mm^2 (400x)." ;
rdfs:subClassOf <http://purl.obolibrary.org/obo/DOID_13922> ;
owl:equivalentClass [ a owl:Restriction ;
owl:allValuesFrom [ a owl:Class ;
owl:intersectionOf ( <http://purl.obolibrary.org/obo/UBERON_0001043> [ a owl:Restriction ;
owl:onProperty sio:hasAttribute ;
owl:someValuesFrom [ a owl:Class ;
owl:intersectionOf ( :EOPerHPF [ a owl:Restriction ;
owl:allValuesFrom [ a rdfs:Datatype ;
owl:onDatatype xsd:integer ;
owl:withRestrictions ( [ xsd:minInclusive 15 ] [ xsd:maxExclusive 25 ] ) ] ;
owl:onProperty sio:hasValue ] ) ] ] ) ] ;
owl:onProperty sio:isPhenotypeOf ] .
:EoERemission a owl:Class ;
rdfs:label "eosinophilic esophagitis in remission" ;
rdfs:comment "Eosinophilic esophagitis is active when a biopsy of the esophagus reveals a count of less than 15 eosinophils per high-power field area, or 0.158 mm^2 (400x)." ;
rdfs:subClassOf <http://purl.obolibrary.org/obo/DOID_13922> ;
owl:equivalentClass [ a owl:Restriction ;
owl:allValuesFrom [ a owl:Class ;
owl:intersectionOf ( <http://purl.obolibrary.org/obo/UBERON_0001043> [ a owl:Restriction ;
owl:onProperty sio:hasAttribute ;
owl:someValuesFrom [ a owl:Class ;
owl:intersectionOf ( :EOPerHPF [ a owl:Restriction ;
owl:allValuesFrom [ a rdfs:Datatype ;
owl:onDatatype xsd:integer ;