cogat.setl.ttl

@prefix rdf:           <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs:          <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd:           <http://www.w3.org/2001/XMLSchema#> .
@prefix owl:           <http://www.w3.org/2002/07/owl#> .
@prefix skos:          <http://www.w3.org/2004/02/skos/core#> .
@prefix prov:          <http://www.w3.org/ns/prov#> .
@prefix sio:           <http://semanticscience.org/resource/> .
@prefix dcat:          <http://www.w3.org/ns/dcat#> .
@prefix dcterms:       <http://purl.org/dc/terms/> .
@prefix void:          <http://rdfs.org/ns/void#> .
@prefix foaf:          <http://xmlns.com/foaf/0.1/> .
@prefix ov:            <http://open.vocab.org/terms/> .
@prefix setl:          <http://purl.org/twc/vocab/setl/> .
@prefix csvw:          <http://www.w3.org/ns/csvw#> .
@prefix pv:            <http://purl.org/net/provenance/ns#>.
@prefix prv:           <http://hadatac.org/ont/prov#>.

@prefix :              <https://hadatac.org/setl/> .

@prefix chear:    <http://hadatac.org/ont/chear#> .

:cogat_table a csvw:Table, setl:Table;
  prov:wasGeneratedBy [
    a setl:Extract;
    prov:used <https://docs.google.com/spreadsheets/d/1ZSIl_4XTa78ZIqWJaKr-dFUNEChdU_5OScNdP4ALkxQ/export?exportFormat=csv&gid=106241699>;
  ].


<http://hadatac.org/ont/cogat> a void:Dataset;
  prov:wasGeneratedBy [
    a setl:Transform, setl:JSLDT;
    prov:used
        :cogat_table;
    setl:hasContext '''{
  "owl": "http://www.w3.org/2002/07/owl#",
  "rdfs": "http://www.w3.org/2000/01/rdf-schema#",
  "sio" :     "http://semanticscience.org/resource/",
  "chear" :   "http://hadatac.org/ont/chear#",
  "skos" :    "http://www.w3.org/2004/02/skos/core#",
  "prov" :    "http://www.w3.org/ns/prov#",
  "chebi" :   "http://purl.obolibrary.org/obo/CHEBI_",
  "obo" :   "http://purl.obolibrary.org/obo/",
  "pubchem" : "http://rdf.ncbi.nlm.nih.gov/pubchem/compound/",
  "dc"   :    "http://purl.org/dc/terms/",
  "hasco" : "http://hadatac.org/ont/hasco#",
  "vstoi" : "http://hadatac.org/ont/vstoi#",
  "hasneto" : "http://hadatac.org/ont/hasneto#",
  "uberon" : "http://purl.obolibrary.org/obo/UBERON_",
  "envo" : "http://purl.obolibrary.org/obo/ENVO_",
  "do": "http://purl.obolibrary.org/obo/DOID_",
  "prv" : "http://hadatac.org/ont/prov#",
  "cogat" : "http://www.cognitiveatlas.org/ontology/cogat.owl#",
  "@vocab" : "http://www.cognitiveatlas.org/ontology/cogat.owl#",
  "chear-kb" : "http://hadatac.org/kb/chear#",
  "cogpo" : "http://www.cogpo.org/ontologies/working/CogPOver2011.owl#",
  "cmo"  :    "http://purl.org/twc/ontologies/cmo.owl#"
}''';
  prov:value '''[
  {
    "@id": "http://www.cognitiveatlas.org/ontology/cogat.owl#",
    "@graph": [
      {
        "@id": "http://hadatac.org/ont/cogat",
        "rdfs:label" : "Cognitive Atlas Ontology",
        "foaf:homepage" : { "@id" : "http://www.cognitiveatlas.org"} ,
        "rdfs:comment" : "The Cognitive Atlas is a collaborative knowledge building project that aims to develop an ontology that characterizes the state of current thought in cognitive science. It defines a set of mental concepts along with a set of mental tasks, and the measurement relations between those classes.",
        "@type" : "owl:Ontology",
        "dc:creator" : "Russell Poldrack, poldrack@gmail.com"
      },
      {
        "@if" : "not isempty(row['Class ID']) and row.Obsolete != 'TRUE'",
        "@id": "{{row['Class ID']}}",
        "@type": "owl:Class",
        "rdfs:label": {
          "@if" : "not isempty(row['Preferred Label'])",
          "@value" : "{{row['Preferred Label'].replace('_',' ')}}"
        },
        "skos:altLabel": [
          {
            "@if" : "not isempty(row['Synonyms'])",
            "@for" : "l in re.split('\\\\s*[,&]\\\\s*',row.Synonyms)",
            "@do" : { "@value" : "{{l.replace('(','').replace(')','')}}" }
          },
          {
            "@if" : "not isempty(row['http://www.w3.org/2004/02/skos/core#altLabel'])",
            "@for" : "l in re.split('\\\\s*[,&]\\\\s*',row['http://www.w3.org/2004/02/skos/core#altLabel'])",
            "@do" : { "@value" : "{{l.replace('(','').replace(')','')}}" }
          }
        ],
        "skos:definition": [ { "@if": "not isempty(row.Definitions)", "@value" : "{{row.Definitions}}"}],
        "dc:contributor" : [ {
          "@if" : "not isempty(row['http://purl.org/dc/terms/Contributor'])",
          "@value" : "{{row['http://purl.org/dc/terms/Contributor']}}"
        } ],
        "dc:date" : [ {
          "@if" : "not isempty(row['http://purl.org/dc/terms/Date'])",
          "@value" : "{{row['http://purl.org/dc/terms/Date']}}",
          "@type" : "xsd:dateTime"
        } ],
        "rdfs:subClassOf": [
          { "@if" : "'Parents' in row and not isempty(row.Parents)",
            "@for" : "s in re.split('\\\\s*[,&]\\\\s*', row.Parents)",
            "@do" : { "@id": "{{s}}", "@type": "owl:Class"}
          },
          { "@if" : "not isempty(row['http://data.bioontology.org/metadata/obo/part_of'])",
            "@for" : "p in row['http://data.bioontology.org/metadata/obo/part_of'].split('|')",
            "@do" : {
              "@type" : "owl:Restriction",
              "owl:onProperty" : { "@id":"sio:isPartOf"},
              "owl:someValuesFrom" : { "@id": "{{p}}" }
            }
          },
          { "@if" : "not isempty(row['http://www.obofoundry.org/ro/ro.owl#has_part'])",
            "@for" : "p in row['http://www.obofoundry.org/ro/ro.owl#has_part'].split('|')",
            "@do" : {
              "@type" : "owl:Restriction",
              "owl:onProperty" : { "@id":"sio:hasPart"},
              "owl:someValuesFrom" : { "@id": "{{p}}" }
            }
          }
        ]
      }
    ]
  }
]''']
.


<cogat.ttl> a pv:File;
    dcterms:format "text/turtle";
    prov:wasGeneratedBy [
      a setl:Load;
      prov:used <http://hadatac.org/ont/cogat> ;
    ].