TEST.sh

scenarioFile=$1
extent=$2
#scenarioname=$3
re="^scenario_(.+).txt$"
if [[ $scenarioFile =~ $re ]]; then scenarioname=${BASH_REMATCH[1]}; fi

dirName="LANDIS_Sim_${2}_${scenarioname}"

echo $dirName

# re="^scenario_(.+).txt$"
# if [[ $scenarioFile =~ $re ]]; then echo ${BASH_REMATCH[1]}; fi

maxsims=$3

for i in `seq 1 $maxsims`
do
    echo "$i"
    mkdir ${dirName}_$date_time&i

    
done
# scenarioname2= sed -e 's|scenario_||; s|.txt||' "${scenarioFile}"
# echo $scenarioname2

# ## GET DATE TIME AND CREATE NEW FOLDER
# date_time="$(date +'%Y%m%d_%H%M')"
    
# ## IF DIRECTORY EXISTS, SLEEP FOR 1 MIN:
# if [ -d "./${dirName}_$date_time" ]; then
#     echo ${dirName}_$date_time already exists. Waiting for 1 minute…
#     sleep 1m
#     date_time="$(date +'%Y%m%d_%H%M')"
# fi

# ## SET DIRECTORY
# echo Creating directory: ${dirName}_$date_time
# mkdir ${dirName}_$date_time
# cd ./${dirName}_$date_time

# ## COPY INPUT FILES INTO NEW DIR FOR ARCHIVING
# mkdir Input_file_archive 
# cp -p ../*.txt					                                ./Input_file_archive 
# cp -p ../$2/*.txt					                            ./Input_file_archive
# cp -p ../*.csv 					                                ./Input_file_archive 
# cp -p ../$2/*.csv					                            ./Input_file_archive
# cp -p ../$2/INITIAL_COMMUNITIES_*.tif 			                    ./Input_file_archive 
# cp -p ../$2/ECOREGIONS_*.tif 				                        ./Input_file_archive 
# cp -p ../$2/ext_BiomassHarvestMgmt_*.tif 		                    ./Input_file_archive 
# cp -p ../$2/ext_BiomassHarvestStands_*.tif 		                ./Input_file_archive 
# cp -p ../$2/zClimate_Library/ClimateGenerator_baseline.txt 		./Input_file_archive 

# ## CREATE SCENARIO FILE WITH CORRECT EXTENT
# sed -i "s|EXTENT|$2|g" ./Input_file_archive/$scenarioFile

# cat ./Input_file_archive/$scenarioFile