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compact.go
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compact.go
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// Copyright (c) The Thanos Authors.
// Licensed under the Apache License 2.0.
package compact
import (
"context"
"fmt"
"math"
"os"
"path/filepath"
"sort"
"sync"
"time"
"github.com/go-kit/log"
"github.com/go-kit/log/level"
"github.com/oklog/ulid"
"github.com/opentracing/opentracing-go"
"github.com/pkg/errors"
"github.com/prometheus/client_golang/prometheus"
"github.com/prometheus/client_golang/prometheus/promauto"
"github.com/prometheus/prometheus/model/labels"
"github.com/prometheus/prometheus/tsdb"
"github.com/thanos-io/objstore"
"golang.org/x/sync/errgroup"
"github.com/thanos-io/thanos/pkg/block"
"github.com/thanos-io/thanos/pkg/block/metadata"
"github.com/thanos-io/thanos/pkg/compact/downsample"
"github.com/thanos-io/thanos/pkg/errutil"
"github.com/thanos-io/thanos/pkg/runutil"
"github.com/thanos-io/thanos/pkg/tracing"
)
type ResolutionLevel int64
const (
ResolutionLevelRaw = ResolutionLevel(downsample.ResLevel0)
ResolutionLevel5m = ResolutionLevel(downsample.ResLevel1)
ResolutionLevel1h = ResolutionLevel(downsample.ResLevel2)
)
const (
// DedupAlgorithmPenalty is the penalty based compactor series merge algorithm.
// This is the same as the online deduplication of querier except counter reset handling.
DedupAlgorithmPenalty = "penalty"
)
// Syncer synchronizes block metas from a bucket into a local directory.
// It sorts them into compaction groups based on equal label sets.
type Syncer struct {
logger log.Logger
reg prometheus.Registerer
bkt objstore.Bucket
fetcher block.MetadataFetcher
mtx sync.Mutex
blocks map[ulid.ULID]*metadata.Meta
partial map[ulid.ULID]error
metrics *syncerMetrics
duplicateBlocksFilter *block.DeduplicateFilter
ignoreDeletionMarkFilter *block.IgnoreDeletionMarkFilter
}
type syncerMetrics struct {
garbageCollectedBlocks prometheus.Counter
garbageCollections prometheus.Counter
garbageCollectionFailures prometheus.Counter
garbageCollectionDuration prometheus.Histogram
blocksMarkedForDeletion prometheus.Counter
}
func newSyncerMetrics(reg prometheus.Registerer, blocksMarkedForDeletion, garbageCollectedBlocks prometheus.Counter) *syncerMetrics {
var m syncerMetrics
m.garbageCollectedBlocks = garbageCollectedBlocks
m.garbageCollections = promauto.With(reg).NewCounter(prometheus.CounterOpts{
Name: "thanos_compact_garbage_collection_total",
Help: "Total number of garbage collection operations.",
})
m.garbageCollectionFailures = promauto.With(reg).NewCounter(prometheus.CounterOpts{
Name: "thanos_compact_garbage_collection_failures_total",
Help: "Total number of failed garbage collection operations.",
})
m.garbageCollectionDuration = promauto.With(reg).NewHistogram(prometheus.HistogramOpts{
Name: "thanos_compact_garbage_collection_duration_seconds",
Help: "Time it took to perform garbage collection iteration.",
Buckets: []float64{0.01, 0.1, 0.3, 0.6, 1, 3, 6, 9, 20, 30, 60, 90, 120, 240, 360, 720},
})
m.blocksMarkedForDeletion = blocksMarkedForDeletion
return &m
}
// NewMetaSyncer returns a new Syncer for the given Bucket and directory.
// Blocks must be at least as old as the sync delay for being considered.
func NewMetaSyncer(logger log.Logger, reg prometheus.Registerer, bkt objstore.Bucket, fetcher block.MetadataFetcher, duplicateBlocksFilter *block.DeduplicateFilter, ignoreDeletionMarkFilter *block.IgnoreDeletionMarkFilter, blocksMarkedForDeletion, garbageCollectedBlocks prometheus.Counter) (*Syncer, error) {
if logger == nil {
logger = log.NewNopLogger()
}
return &Syncer{
logger: logger,
reg: reg,
bkt: bkt,
fetcher: fetcher,
blocks: map[ulid.ULID]*metadata.Meta{},
metrics: newSyncerMetrics(reg, blocksMarkedForDeletion, garbageCollectedBlocks),
duplicateBlocksFilter: duplicateBlocksFilter,
ignoreDeletionMarkFilter: ignoreDeletionMarkFilter,
}, nil
}
// UntilNextDownsampling calculates how long it will take until the next downsampling operation.
// Returns an error if there will be no downsampling.
func UntilNextDownsampling(m *metadata.Meta) (time.Duration, error) {
timeRange := time.Duration((m.MaxTime - m.MinTime) * int64(time.Millisecond))
switch m.Thanos.Downsample.Resolution {
case downsample.ResLevel2:
return time.Duration(0), errors.New("no downsampling")
case downsample.ResLevel1:
return time.Duration(downsample.ResLevel2DownsampleRange*time.Millisecond) - timeRange, nil
case downsample.ResLevel0:
return time.Duration(downsample.ResLevel1DownsampleRange*time.Millisecond) - timeRange, nil
default:
panic(errors.Errorf("invalid resolution %v", m.Thanos.Downsample.Resolution))
}
}
// SyncMetas synchronizes local state of block metas with what we have in the bucket.
func (s *Syncer) SyncMetas(ctx context.Context) error {
s.mtx.Lock()
defer s.mtx.Unlock()
metas, partial, err := s.fetcher.Fetch(ctx)
if err != nil {
return retry(err)
}
s.blocks = metas
s.partial = partial
return nil
}
// Partial returns partial blocks since last sync.
func (s *Syncer) Partial() map[ulid.ULID]error {
s.mtx.Lock()
defer s.mtx.Unlock()
return s.partial
}
// Metas returns loaded metadata blocks since last sync.
func (s *Syncer) Metas() map[ulid.ULID]*metadata.Meta {
s.mtx.Lock()
defer s.mtx.Unlock()
return s.blocks
}
// GarbageCollect marks blocks for deletion from bucket if their data is available as part of a
// block with a higher compaction level.
// Call to SyncMetas function is required to populate duplicateIDs in duplicateBlocksFilter.
func (s *Syncer) GarbageCollect(ctx context.Context) error {
s.mtx.Lock()
defer s.mtx.Unlock()
begin := time.Now()
// Ignore filter exists before deduplicate filter.
deletionMarkMap := s.ignoreDeletionMarkFilter.DeletionMarkBlocks()
duplicateIDs := s.duplicateBlocksFilter.DuplicateIDs()
// GarbageIDs contains the duplicateIDs, since these blocks can be replaced with other blocks.
// We also remove ids present in deletionMarkMap since these blocks are already marked for deletion.
garbageIDs := []ulid.ULID{}
for _, id := range duplicateIDs {
if _, exists := deletionMarkMap[id]; exists {
continue
}
garbageIDs = append(garbageIDs, id)
}
for _, id := range garbageIDs {
if ctx.Err() != nil {
return ctx.Err()
}
// Spawn a new context so we always mark a block for deletion in full on shutdown.
delCtx, cancel := context.WithTimeout(context.Background(), 5*time.Minute)
level.Info(s.logger).Log("msg", "marking outdated block for deletion", "block", id)
err := block.MarkForDeletion(delCtx, s.logger, s.bkt, id, "outdated block", s.metrics.blocksMarkedForDeletion)
cancel()
if err != nil {
s.metrics.garbageCollectionFailures.Inc()
return retry(errors.Wrapf(err, "mark block %s for deletion", id))
}
// Immediately update our in-memory state so no further call to SyncMetas is needed
// after running garbage collection.
delete(s.blocks, id)
s.metrics.garbageCollectedBlocks.Inc()
}
s.metrics.garbageCollections.Inc()
s.metrics.garbageCollectionDuration.Observe(time.Since(begin).Seconds())
return nil
}
// Grouper is responsible to group all known blocks into sub groups which are safe to be
// compacted concurrently.
type Grouper interface {
// Groups returns the compaction groups for all blocks currently known to the syncer.
// It creates all groups from the scratch on every call.
Groups(blocks map[ulid.ULID]*metadata.Meta) (res []*Group, err error)
}
// DefaultGrouper is the Thanos built-in grouper. It groups blocks based on downsample
// resolution and block's labels.
type DefaultGrouper struct {
bkt objstore.Bucket
logger log.Logger
acceptMalformedIndex bool
enableVerticalCompaction bool
compactions *prometheus.CounterVec
compactionRunsStarted *prometheus.CounterVec
compactionRunsCompleted *prometheus.CounterVec
compactionFailures *prometheus.CounterVec
verticalCompactions *prometheus.CounterVec
garbageCollectedBlocks prometheus.Counter
blocksMarkedForDeletion prometheus.Counter
blocksMarkedForNoCompact prometheus.Counter
hashFunc metadata.HashFunc
blockFilesConcurrency int
compactBlocksFetchConcurrency int
}
// NewDefaultGrouper makes a new DefaultGrouper.
func NewDefaultGrouper(
logger log.Logger,
bkt objstore.Bucket,
acceptMalformedIndex bool,
enableVerticalCompaction bool,
reg prometheus.Registerer,
blocksMarkedForDeletion prometheus.Counter,
garbageCollectedBlocks prometheus.Counter,
blocksMarkedForNoCompact prometheus.Counter,
hashFunc metadata.HashFunc,
blockFilesConcurrency int,
compactBlocksFetchConcurrency int,
) *DefaultGrouper {
return &DefaultGrouper{
bkt: bkt,
logger: logger,
acceptMalformedIndex: acceptMalformedIndex,
enableVerticalCompaction: enableVerticalCompaction,
compactions: promauto.With(reg).NewCounterVec(prometheus.CounterOpts{
Name: "thanos_compact_group_compactions_total",
Help: "Total number of group compaction attempts that resulted in a new block.",
}, []string{"group"}),
compactionRunsStarted: promauto.With(reg).NewCounterVec(prometheus.CounterOpts{
Name: "thanos_compact_group_compaction_runs_started_total",
Help: "Total number of group compaction attempts.",
}, []string{"group"}),
compactionRunsCompleted: promauto.With(reg).NewCounterVec(prometheus.CounterOpts{
Name: "thanos_compact_group_compaction_runs_completed_total",
Help: "Total number of group completed compaction runs. This also includes compactor group runs that resulted with no compaction.",
}, []string{"group"}),
compactionFailures: promauto.With(reg).NewCounterVec(prometheus.CounterOpts{
Name: "thanos_compact_group_compactions_failures_total",
Help: "Total number of failed group compactions.",
}, []string{"group"}),
verticalCompactions: promauto.With(reg).NewCounterVec(prometheus.CounterOpts{
Name: "thanos_compact_group_vertical_compactions_total",
Help: "Total number of group compaction attempts that resulted in a new block based on overlapping blocks.",
}, []string{"group"}),
blocksMarkedForNoCompact: blocksMarkedForNoCompact,
garbageCollectedBlocks: garbageCollectedBlocks,
blocksMarkedForDeletion: blocksMarkedForDeletion,
hashFunc: hashFunc,
blockFilesConcurrency: blockFilesConcurrency,
compactBlocksFetchConcurrency: compactBlocksFetchConcurrency,
}
}
// Groups returns the compaction groups for all blocks currently known to the syncer.
// It creates all groups from the scratch on every call.
func (g *DefaultGrouper) Groups(blocks map[ulid.ULID]*metadata.Meta) (res []*Group, err error) {
groups := map[string]*Group{}
for _, m := range blocks {
groupKey := m.Thanos.GroupKey()
group, ok := groups[groupKey]
if !ok {
lbls := labels.FromMap(m.Thanos.Labels)
group, err = NewGroup(
log.With(g.logger, "group", fmt.Sprintf("%d@%v", m.Thanos.Downsample.Resolution, lbls.String()), "groupKey", groupKey),
g.bkt,
groupKey,
lbls,
m.Thanos.Downsample.Resolution,
g.acceptMalformedIndex,
g.enableVerticalCompaction,
g.compactions.WithLabelValues(groupKey),
g.compactionRunsStarted.WithLabelValues(groupKey),
g.compactionRunsCompleted.WithLabelValues(groupKey),
g.compactionFailures.WithLabelValues(groupKey),
g.verticalCompactions.WithLabelValues(groupKey),
g.garbageCollectedBlocks,
g.blocksMarkedForDeletion,
g.blocksMarkedForNoCompact,
g.hashFunc,
g.blockFilesConcurrency,
g.compactBlocksFetchConcurrency,
)
if err != nil {
return nil, errors.Wrap(err, "create compaction group")
}
groups[groupKey] = group
res = append(res, group)
}
if err := group.AppendMeta(m); err != nil {
return nil, errors.Wrap(err, "add compaction group")
}
}
sort.Slice(res, func(i, j int) bool {
return res[i].Key() < res[j].Key()
})
return res, nil
}
// Group captures a set of blocks that have the same origin labels and downsampling resolution.
// Those blocks generally contain the same series and can thus efficiently be compacted.
type Group struct {
logger log.Logger
bkt objstore.Bucket
key string
labels labels.Labels
resolution int64
mtx sync.Mutex
metasByMinTime []*metadata.Meta
acceptMalformedIndex bool
enableVerticalCompaction bool
compactions prometheus.Counter
compactionRunsStarted prometheus.Counter
compactionRunsCompleted prometheus.Counter
compactionFailures prometheus.Counter
verticalCompactions prometheus.Counter
groupGarbageCollectedBlocks prometheus.Counter
blocksMarkedForDeletion prometheus.Counter
blocksMarkedForNoCompact prometheus.Counter
hashFunc metadata.HashFunc
blockFilesConcurrency int
compactBlocksFetchConcurrency int
}
// NewGroup returns a new compaction group.
func NewGroup(
logger log.Logger,
bkt objstore.Bucket,
key string,
lset labels.Labels,
resolution int64,
acceptMalformedIndex bool,
enableVerticalCompaction bool,
compactions prometheus.Counter,
compactionRunsStarted prometheus.Counter,
compactionRunsCompleted prometheus.Counter,
compactionFailures prometheus.Counter,
verticalCompactions prometheus.Counter,
groupGarbageCollectedBlocks prometheus.Counter,
blocksMarkedForDeletion prometheus.Counter,
blocksMarkedForNoCompact prometheus.Counter,
hashFunc metadata.HashFunc,
blockFilesConcurrency int,
compactBlocksFetchConcurrency int,
) (*Group, error) {
if logger == nil {
logger = log.NewNopLogger()
}
if blockFilesConcurrency <= 0 {
return nil, errors.Errorf("invalid concurrency level (%d), blockFilesConcurrency level must be > 0", blockFilesConcurrency)
}
g := &Group{
logger: logger,
bkt: bkt,
key: key,
labels: lset,
resolution: resolution,
acceptMalformedIndex: acceptMalformedIndex,
enableVerticalCompaction: enableVerticalCompaction,
compactions: compactions,
compactionRunsStarted: compactionRunsStarted,
compactionRunsCompleted: compactionRunsCompleted,
compactionFailures: compactionFailures,
verticalCompactions: verticalCompactions,
groupGarbageCollectedBlocks: groupGarbageCollectedBlocks,
blocksMarkedForDeletion: blocksMarkedForDeletion,
blocksMarkedForNoCompact: blocksMarkedForNoCompact,
hashFunc: hashFunc,
blockFilesConcurrency: blockFilesConcurrency,
compactBlocksFetchConcurrency: compactBlocksFetchConcurrency,
}
return g, nil
}
// Key returns an identifier for the group.
func (cg *Group) Key() string {
return cg.key
}
func (cg *Group) deleteFromGroup(target map[ulid.ULID]struct{}) {
cg.mtx.Lock()
defer cg.mtx.Unlock()
var newGroupMeta []*metadata.Meta
for _, meta := range cg.metasByMinTime {
if _, found := target[meta.BlockMeta.ULID]; !found {
newGroupMeta = append(newGroupMeta, meta)
}
}
cg.metasByMinTime = newGroupMeta
}
// AppendMeta the block with the given meta to the group.
func (cg *Group) AppendMeta(meta *metadata.Meta) error {
cg.mtx.Lock()
defer cg.mtx.Unlock()
if !labels.Equal(cg.labels, labels.FromMap(meta.Thanos.Labels)) {
return errors.New("block and group labels do not match")
}
if cg.resolution != meta.Thanos.Downsample.Resolution {
return errors.New("block and group resolution do not match")
}
cg.metasByMinTime = append(cg.metasByMinTime, meta)
sort.Slice(cg.metasByMinTime, func(i, j int) bool {
return cg.metasByMinTime[i].MinTime < cg.metasByMinTime[j].MinTime
})
return nil
}
// IDs returns all sorted IDs of blocks in the group.
func (cg *Group) IDs() (ids []ulid.ULID) {
cg.mtx.Lock()
defer cg.mtx.Unlock()
for _, m := range cg.metasByMinTime {
ids = append(ids, m.ULID)
}
sort.Slice(ids, func(i, j int) bool {
return ids[i].Compare(ids[j]) < 0
})
return ids
}
// MinTime returns the min time across all group's blocks.
func (cg *Group) MinTime() int64 {
cg.mtx.Lock()
defer cg.mtx.Unlock()
if len(cg.metasByMinTime) > 0 {
return cg.metasByMinTime[0].MinTime
}
return math.MaxInt64
}
// MaxTime returns the max time across all group's blocks.
func (cg *Group) MaxTime() int64 {
cg.mtx.Lock()
defer cg.mtx.Unlock()
max := int64(math.MinInt64)
for _, m := range cg.metasByMinTime {
if m.MaxTime > max {
max = m.MaxTime
}
}
return max
}
// Labels returns the labels that all blocks in the group share.
func (cg *Group) Labels() labels.Labels {
return cg.labels
}
// Resolution returns the common downsampling resolution of blocks in the group.
func (cg *Group) Resolution() int64 {
return cg.resolution
}
// CompactProgressMetrics contains Prometheus metrics related to compaction progress.
type CompactProgressMetrics struct {
NumberOfCompactionRuns *prometheus.GaugeVec
NumberOfCompactionBlocks *prometheus.GaugeVec
}
// ProgressCalculator calculates the progress of the compaction process for a given slice of Groups.
type ProgressCalculator interface {
ProgressCalculate(ctx context.Context, groups []*Group) error
}
// CompactionProgressCalculator contains a planner and ProgressMetrics, which are updated during the compaction simulation process.
type CompactionProgressCalculator struct {
planner Planner
*CompactProgressMetrics
}
// NewCompactProgressCalculator creates a new CompactionProgressCalculator.
func NewCompactionProgressCalculator(reg prometheus.Registerer, planner *tsdbBasedPlanner) *CompactionProgressCalculator {
return &CompactionProgressCalculator{
planner: planner,
CompactProgressMetrics: &CompactProgressMetrics{
NumberOfCompactionRuns: promauto.With(reg).NewGaugeVec(prometheus.GaugeOpts{
Name: "thanos_compact_todo_compactions",
Help: "number of compactions to be done",
}, []string{"group"}),
NumberOfCompactionBlocks: promauto.With(reg).NewGaugeVec(prometheus.GaugeOpts{
Name: "thanos_compact_todo_compaction_blocks",
Help: "number of blocks planned to be compacted",
}, []string{"group"}),
},
}
}
// ProgressCalculate calculates the number of blocks and compaction runs in the planning process of the given groups.
func (ps *CompactionProgressCalculator) ProgressCalculate(ctx context.Context, groups []*Group) error {
groupCompactions := make(map[string]int, len(groups))
groupBlocks := make(map[string]int, len(groups))
for len(groups) > 0 {
tmpGroups := make([]*Group, 0, len(groups))
for _, g := range groups {
if len(g.IDs()) == 1 {
continue
}
plan, err := ps.planner.Plan(ctx, g.metasByMinTime)
if err != nil {
return errors.Wrapf(err, "could not plan")
}
if len(plan) == 0 {
continue
}
groupCompactions[g.key]++
toRemove := make(map[ulid.ULID]struct{}, len(plan))
metas := make([]*tsdb.BlockMeta, 0, len(plan))
for _, p := range plan {
metas = append(metas, &p.BlockMeta)
toRemove[p.BlockMeta.ULID] = struct{}{}
}
g.deleteFromGroup(toRemove)
groupBlocks[g.key] += len(plan)
if len(g.metasByMinTime) == 0 {
continue
}
newMeta := tsdb.CompactBlockMetas(ulid.MustNew(uint64(time.Now().Unix()), nil), metas...)
if err := g.AppendMeta(&metadata.Meta{BlockMeta: *newMeta, Thanos: metadata.Thanos{Downsample: metadata.ThanosDownsample{Resolution: g.Resolution()}, Labels: g.Labels().Map()}}); err != nil {
return errors.Wrapf(err, "append meta")
}
tmpGroups = append(tmpGroups, g)
}
groups = tmpGroups
}
ps.CompactProgressMetrics.NumberOfCompactionRuns.Reset()
ps.CompactProgressMetrics.NumberOfCompactionBlocks.Reset()
for key, iters := range groupCompactions {
ps.CompactProgressMetrics.NumberOfCompactionRuns.WithLabelValues(key).Add(float64(iters))
ps.CompactProgressMetrics.NumberOfCompactionBlocks.WithLabelValues(key).Add(float64(groupBlocks[key]))
}
return nil
}
// DownsampleProgressMetrics contains Prometheus metrics related to downsampling progress.
type DownsampleProgressMetrics struct {
NumberOfBlocksDownsampled *prometheus.GaugeVec
}
// DownsampleProgressCalculator contains DownsampleMetrics, which are updated during the downsampling simulation process.
type DownsampleProgressCalculator struct {
*DownsampleProgressMetrics
}
// NewDownsampleProgressCalculator creates a new DownsampleProgressCalculator.
func NewDownsampleProgressCalculator(reg prometheus.Registerer) *DownsampleProgressCalculator {
return &DownsampleProgressCalculator{
DownsampleProgressMetrics: &DownsampleProgressMetrics{
NumberOfBlocksDownsampled: promauto.With(reg).NewGaugeVec(prometheus.GaugeOpts{
Name: "thanos_compact_todo_downsample_blocks",
Help: "number of blocks to be downsampled",
}, []string{"group"}),
},
}
}
// ProgressCalculate calculates the number of blocks to be downsampled for the given groups.
func (ds *DownsampleProgressCalculator) ProgressCalculate(ctx context.Context, groups []*Group) error {
sources5m := map[ulid.ULID]struct{}{}
sources1h := map[ulid.ULID]struct{}{}
groupBlocks := make(map[string]int, len(groups))
for _, group := range groups {
for _, m := range group.metasByMinTime {
switch m.Thanos.Downsample.Resolution {
case downsample.ResLevel0:
continue
case downsample.ResLevel1:
for _, id := range m.Compaction.Sources {
sources5m[id] = struct{}{}
}
case downsample.ResLevel2:
for _, id := range m.Compaction.Sources {
sources1h[id] = struct{}{}
}
default:
return errors.Errorf("unexpected downsampling resolution %d", m.Thanos.Downsample.Resolution)
}
}
}
for _, group := range groups {
for _, m := range group.metasByMinTime {
switch m.Thanos.Downsample.Resolution {
case downsample.ResLevel0:
missing := false
for _, id := range m.Compaction.Sources {
if _, ok := sources5m[id]; !ok {
missing = true
break
}
}
if !missing {
continue
}
if m.MaxTime-m.MinTime < downsample.ResLevel1DownsampleRange {
continue
}
groupBlocks[group.key]++
case downsample.ResLevel1:
missing := false
for _, id := range m.Compaction.Sources {
if _, ok := sources1h[id]; !ok {
missing = true
break
}
}
if !missing {
continue
}
if m.MaxTime-m.MinTime < downsample.ResLevel2DownsampleRange {
continue
}
groupBlocks[group.key]++
}
}
}
ds.DownsampleProgressMetrics.NumberOfBlocksDownsampled.Reset()
for key, blocks := range groupBlocks {
ds.DownsampleProgressMetrics.NumberOfBlocksDownsampled.WithLabelValues(key).Add(float64(blocks))
}
return nil
}
// RetentionProgressMetrics contains Prometheus metrics related to retention progress.
type RetentionProgressMetrics struct {
NumberOfBlocksToDelete *prometheus.GaugeVec
}
// RetentionProgressCalculator contains RetentionProgressMetrics, which are updated during the retention simulation process.
type RetentionProgressCalculator struct {
*RetentionProgressMetrics
retentionByResolution map[ResolutionLevel]time.Duration
}
// NewRetentionProgressCalculator creates a new RetentionProgressCalculator.
func NewRetentionProgressCalculator(reg prometheus.Registerer, retentionByResolution map[ResolutionLevel]time.Duration) *RetentionProgressCalculator {
return &RetentionProgressCalculator{
retentionByResolution: retentionByResolution,
RetentionProgressMetrics: &RetentionProgressMetrics{
NumberOfBlocksToDelete: promauto.With(reg).NewGaugeVec(prometheus.GaugeOpts{
Name: "thanos_compact_todo_deletion_blocks",
Help: "number of blocks that have crossed their retention period",
}, []string{"group"}),
},
}
}
// ProgressCalculate calculates the number of blocks to be retained for the given groups.
func (rs *RetentionProgressCalculator) ProgressCalculate(ctx context.Context, groups []*Group) error {
groupBlocks := make(map[string]int, len(groups))
for _, group := range groups {
for _, m := range group.metasByMinTime {
retentionDuration := rs.retentionByResolution[ResolutionLevel(m.Thanos.Downsample.Resolution)]
if retentionDuration.Seconds() == 0 {
continue
}
maxTime := time.Unix(m.MaxTime/1000, 0)
if time.Now().After(maxTime.Add(retentionDuration)) {
groupBlocks[group.key]++
}
}
}
rs.RetentionProgressMetrics.NumberOfBlocksToDelete.Reset()
for key, blocks := range groupBlocks {
rs.RetentionProgressMetrics.NumberOfBlocksToDelete.WithLabelValues(key).Add(float64(blocks))
}
return nil
}
// Planner returns blocks to compact.
type Planner interface {
// Plan returns a list of blocks that should be compacted into single one.
// The blocks can be overlapping. The provided metadata has to be ordered by minTime.
Plan(ctx context.Context, metasByMinTime []*metadata.Meta) ([]*metadata.Meta, error)
}
// Compactor provides compaction against an underlying storage of time series data.
// This is similar to tsdb.Compactor just without Plan method.
// TODO(bwplotka): Split the Planner from Compactor on upstream as well, so we can import it.
type Compactor interface {
// Write persists a Block into a directory.
// No Block is written when resulting Block has 0 samples, and returns empty ulid.ULID{}.
Write(dest string, b tsdb.BlockReader, mint, maxt int64, parent *tsdb.BlockMeta) (ulid.ULID, error)
// Compact runs compaction against the provided directories. Must
// only be called concurrently with results of Plan().
// Can optionally pass a list of already open blocks,
// to avoid having to reopen them.
// When resulting Block has 0 samples
// * No block is written.
// * The source dirs are marked Deletable.
// * Returns empty ulid.ULID{}.
Compact(dest string, dirs []string, open []*tsdb.Block) (ulid.ULID, error)
}
// Compact plans and runs a single compaction against the group. The compacted result
// is uploaded into the bucket the blocks were retrieved from.
func (cg *Group) Compact(ctx context.Context, dir string, planner Planner, comp Compactor) (shouldRerun bool, compID ulid.ULID, rerr error) {
cg.compactionRunsStarted.Inc()
subDir := filepath.Join(dir, cg.Key())
defer func() {
// Leave the compact directory for inspection if it is a halt error
// or if it is not then so that possibly we would not have to download everything again.
if rerr != nil {
return
}
if err := os.RemoveAll(subDir); err != nil {
level.Error(cg.logger).Log("msg", "failed to remove compaction group work directory", "path", subDir, "err", err)
}
}()
if err := os.MkdirAll(subDir, 0750); err != nil {
return false, ulid.ULID{}, errors.Wrap(err, "create compaction group dir")
}
err := tracing.DoInSpanWithErr(ctx, "compaction_group", func(ctx context.Context) (err error) {
shouldRerun, compID, err = cg.compact(ctx, subDir, planner, comp)
return err
}, opentracing.Tags{"group.key": cg.Key()})
if err != nil {
cg.compactionFailures.Inc()
return false, ulid.ULID{}, err
}
cg.compactionRunsCompleted.Inc()
return shouldRerun, compID, nil
}
// Issue347Error is a type wrapper for errors that should invoke repair process for broken block.
type Issue347Error struct {
err error
id ulid.ULID
}
func issue347Error(err error, brokenBlock ulid.ULID) Issue347Error {
return Issue347Error{err: err, id: brokenBlock}
}
func (e Issue347Error) Error() string {
return e.err.Error()
}
// IsIssue347Error returns true if the base error is a Issue347Error.
func IsIssue347Error(err error) bool {
_, ok := errors.Cause(err).(Issue347Error)
return ok
}
// OutOfOrderChunkError is a type wrapper for OOO chunk error from validating block index.
type OutOfOrderChunksError struct {
err error
id ulid.ULID
}
func (e OutOfOrderChunksError) Error() string {
return e.err.Error()
}
func outOfOrderChunkError(err error, brokenBlock ulid.ULID) OutOfOrderChunksError {
return OutOfOrderChunksError{err: err, id: brokenBlock}
}
// IsOutOfOrderChunk returns true if the base error is a OutOfOrderChunkError.
func IsOutOfOrderChunkError(err error) bool {
_, ok := errors.Cause(err).(OutOfOrderChunksError)
return ok
}
// HaltError is a type wrapper for errors that should halt any further progress on compactions.
type HaltError struct {
err error
}
func halt(err error) HaltError {
return HaltError{err: err}
}
func (e HaltError) Error() string {
return e.err.Error()
}
// IsHaltError returns true if the base error is a HaltError.
// If a multierror is passed, any halt error will return true.
func IsHaltError(err error) bool {
if multiErr, ok := errors.Cause(err).(errutil.NonNilMultiError); ok {
for _, err := range multiErr {
if _, ok := errors.Cause(err).(HaltError); ok {
return true
}
}
return false
}
_, ok := errors.Cause(err).(HaltError)
return ok
}
// RetryError is a type wrapper for errors that should trigger warning log and retry whole compaction loop, but aborting
// current compaction further progress.
type RetryError struct {
err error
}
func retry(err error) error {
if IsHaltError(err) {
return err
}
return RetryError{err: err}
}
func (e RetryError) Error() string {
return e.err.Error()
}
// IsRetryError returns true if the base error is a RetryError.
// If a multierror is passed, all errors must be retriable.
func IsRetryError(err error) bool {
if multiErr, ok := errors.Cause(err).(errutil.NonNilMultiError); ok {
for _, err := range multiErr {
if _, ok := errors.Cause(err).(RetryError); !ok {
return false
}
}
return true
}
_, ok := errors.Cause(err).(RetryError)
return ok
}
func (cg *Group) areBlocksOverlapping(include *metadata.Meta, exclude ...*metadata.Meta) error {
var (
metas []tsdb.BlockMeta
excludeMap = map[ulid.ULID]struct{}{}
)
for _, meta := range exclude {
excludeMap[meta.ULID] = struct{}{}
}
for _, m := range cg.metasByMinTime {
if _, ok := excludeMap[m.ULID]; ok {
continue
}
metas = append(metas, m.BlockMeta)
}
if include != nil {
metas = append(metas, include.BlockMeta)
}
sort.Slice(metas, func(i, j int) bool {
return metas[i].MinTime < metas[j].MinTime
})
if overlaps := tsdb.OverlappingBlocks(metas); len(overlaps) > 0 {
return errors.Errorf("overlaps found while gathering blocks. %s", overlaps)
}
return nil
}
// RepairIssue347 repairs the https://github.com/prometheus/tsdb/issues/347 issue when having issue347Error.
func RepairIssue347(ctx context.Context, logger log.Logger, bkt objstore.Bucket, blocksMarkedForDeletion prometheus.Counter, issue347Err error) error {
ie, ok := errors.Cause(issue347Err).(Issue347Error)
if !ok {
return errors.Errorf("Given error is not an issue347 error: %v", issue347Err)
}
level.Info(logger).Log("msg", "Repairing block broken by https://github.com/prometheus/tsdb/issues/347", "id", ie.id, "err", issue347Err)
tmpdir, err := os.MkdirTemp("", fmt.Sprintf("repair-issue-347-id-%s-", ie.id))
if err != nil {
return err
}
defer func() {
if err := os.RemoveAll(tmpdir); err != nil {
level.Warn(logger).Log("msg", "failed to remote tmpdir", "err", err, "tmpdir", tmpdir)
}
}()
bdir := filepath.Join(tmpdir, ie.id.String())
if err := block.Download(ctx, logger, bkt, ie.id, bdir); err != nil {
return retry(errors.Wrapf(err, "download block %s", ie.id))
}
meta, err := metadata.ReadFromDir(bdir)
if err != nil {
return errors.Wrapf(err, "read meta from %s", bdir)
}
resid, err := block.Repair(logger, tmpdir, ie.id, metadata.CompactorRepairSource, block.IgnoreIssue347OutsideChunk)
if err != nil {
return errors.Wrapf(err, "repair failed for block %s", ie.id)
}
// Verify repaired id before uploading it.
if err := block.VerifyIndex(logger, filepath.Join(tmpdir, resid.String(), block.IndexFilename), meta.MinTime, meta.MaxTime); err != nil {
return errors.Wrapf(err, "repaired block is invalid %s", resid)
}
level.Info(logger).Log("msg", "uploading repaired block", "newID", resid)
if err = block.Upload(ctx, logger, bkt, filepath.Join(tmpdir, resid.String()), metadata.NoneFunc); err != nil {
return retry(errors.Wrapf(err, "upload of %s failed", resid))
}
level.Info(logger).Log("msg", "deleting broken block", "id", ie.id)
// Spawn a new context so we always mark a block for deletion in full on shutdown.
delCtx, cancel := context.WithTimeout(context.Background(), 5*time.Minute)
defer cancel()
// TODO(bplotka): Issue with this will introduce overlap that will halt compactor. Automate that (fix duplicate overlaps caused by this).
if err := block.MarkForDeletion(delCtx, logger, bkt, ie.id, "source of repaired block", blocksMarkedForDeletion); err != nil {
return errors.Wrapf(err, "marking old block %s for deletion has failed", ie.id)
}
return nil
}
func (cg *Group) compact(ctx context.Context, dir string, planner Planner, comp Compactor) (shouldRerun bool, compID ulid.ULID, _ error) {
cg.mtx.Lock()
defer cg.mtx.Unlock()
// Check for overlapped blocks.
overlappingBlocks := false
if err := cg.areBlocksOverlapping(nil); err != nil {
// TODO(bwplotka): It would really nice if we could still check for other overlaps than replica. In fact this should be checked
// in syncer itself. Otherwise with vertical compaction enabled we will sacrifice this important check.
if !cg.enableVerticalCompaction {
return false, ulid.ULID{}, halt(errors.Wrap(err, "pre compaction overlap check"))
}
overlappingBlocks = true
}
var toCompact []*metadata.Meta
if err := tracing.DoInSpanWithErr(ctx, "compaction_planning", func(ctx context.Context) (e error) {
toCompact, e = planner.Plan(ctx, cg.metasByMinTime)
return e
}); err != nil {
return false, ulid.ULID{}, errors.Wrap(err, "plan compaction")
}
if len(toCompact) == 0 {