Makefile.PL.skeleton

#!/usr/bin/perl
#use lib './install_util';
use ExtUtils::MakeMaker;
use GuessDirectories;
use FindBin '$Bin';
use Cwd;
require 5.005003;

# See lib/ExtUtils/MakeMaker.pm for details of how to influence
# the contents of the Makefile that is written.

my $VERSION = '0.01';

WriteMakefile(
	      NAME         => 'Audio::DB',
	      VERSION      => $VERSION,
	      PREREQ_PM    => {
			      },
	      PL_FILES     => {
			       'bin/album_distribution.PLS'      => 'bin/album_distribution.pl',
			       'bin/albums_below_threshold.PLS'  => 'bin/albums_below_threshold.pl',
			       'bin/artists_with_multiple_genres.PLS' => 'bin/artists_with_multiple_genres.pl',
			       'bin/create_database.PLS'         => 'bin/create_database.pl',
			       'bin/create_schema.PLS'           => 'bin/create_schema.pl',
			       'bin/generate_album_list.PLS'     => 'bin/generate_album_list.pl',
			       'bin/genre_statistics.PLS'        => 'bin/genre_statistics.pl',
			       'bin/library_statistics.PLS'      => 'bin/library_statistics.pl',
			       'bin/song_distribution.PLS'       => 'bin/song_distribution.pl',
			      },
	      ($] >= 5.005 
	       ? (ABSTRACT  => 'Relational databases and statistics of music collections'
		  AUTHOR         => 'Todd Harris (harris@cshl.edu)')
	       : ()),
	     );

my $working_dir = cwd;

my @OPTIONS = qw(APACHE BIN CGIBIN HTDOCS CONF NONROOT LIB)
my $OPTIONS = join ('|',@OPTIONS);
my %OPTIONS;

my @argv = @ARGV;
@ARGV = ();

foreach (@argv) {
  if (/^--?h/i) {
    die <<END;
To customize install locations, provide one or more of the options
APACHE, BIN, HTDOCS, CGIBIN, CONF as in CONF=/usr/local/apache/conf.

For RedHat Linux, you will want to use:
    perl Makefile.PL CONF=/etc/httpd/conf \\
                     HTDOCS=/var/www/html \\
                     CGIBIN=/var/www/cgi-bin

For Mac OS 10.3, you will want to use:
    perl Makefile.PL CONF=/Library/WebServer/conf \\
                     HTDOCS=/Library/WebServer/Documents \\
                     CGIBIN=/Library/WebServer/CGI-Executables

For most versions of Apache built from source code, use:
    perl Makefile.PL APACHE=/usr/local/apache

To install as a user without root privileges, in addition to 
the arguments above, provide the arguments NONROOT=1,
LIB=/path/to/perl/libs and BIN=/path/to/scripts

For example:
    perl Makefile.PL APACHE=~/gbrowse \\
		     LIB=~/gbrowse/lib \\
		     BIN=~/gbrowse/bin \\
		     NONROOT=1

#will perform a non-privileged installation that places all gbrowse
#components (including perl libraries) in the path ~/gbrowse.

#In the above example, before running 'make install', create the
#directories ~/gbrowse/html, ~gbrowse/cgi-bin and ~/gbrowse/conf

#To make the CGI scipts aware of the custom library location, you can
#either ask someone with root privileges to edit the apache
#configuration file or define the environmental variable $PERL5LIB for
#the owner of the httpd processes serving gbrowse.  Failing that, you
#will want to add the line

#  use lib "$ENV{HOME}/gbrowse/lib";

#to each of the CGI scripts.

#If you have a C compiler and wish to compile the XS extensions, set
#DO_XS=1.  Currently all this does is to speed up the multiple
#alignment plugin.
#END
#;
#  }

#  elsif (/($OPTIONS)=(.+)/og) {
#    $OPTIONS{$1} = interpolate($2);
#  }

#  else {
#    push @ARGV,$_;
#  }
#}

if (-e 'MusicDB.def' && !%OPTIONS) {
  print STDERR "\nShould I use your previous settings to set the file paths and options (y/n) [y]? ";
  chomp (my $line = <>);
  if (!$line || $line =~ /^[yY]/) {
    print STDERR "Using previous settings for file paths and options.\n";
    open F,'MusicDB.def' or die "MusicDB.def: $!";
    while (<F>) {
      chomp;
      next if /^\#/;
      next unless /^($OPTIONS)=(.+)/o;
      $OPTIONS{$1} = interpolate($2);
    }
    close F;
  }
}
$OPTIONS{APACHE} ||= $OPTIONS{PREFIX}        if exists $OPTIONS{PREFIX};
$OPTIONS{BIN}    ||= $OPTIONS{INSTALLSCRIPT} if exists $OPTIONS{INSTALLSCRIPT};

if ($OPTIONS{APACHE} && !(defined $OPTIONS{CONF})) {
  $OPTIONS{CONF} = "$OPTIONS{APACHE}/conf";
}
if ($OPTIONS{APACHE} && !(defined $OPTIONS{HTDOCS})) {
  $OPTIONS{HTDOCS} = "$OPTIONS{APACHE}/htdocs";
}
if ($OPTIONS{APACHE} && !(defined $OPTIONS{CGIBIN})) {
  $OPTIONS{CGIBIN} = "$OPTIONS{APACHE}/cgi-bin";
}

# set hard-coded values
$OPTIONS{APACHE} ||= '/usr/local/apache';
unless ($OPTIONS{CONF}) {
  $OPTIONS{CONF} = GuessDirectories->conf || "$OPTIONS{APACHE}/conf";
}
unless ($OPTIONS{HTDOCS}) {
  $OPTIONS{HTDOCS} = GuessDirectories->htdocs || "$OPTIONS{APACHE}/htdocs";
}
unless ($OPTIONS{CGIBIN}) {
  $OPTIONS{CGIBIN} = GuessDirectories->cgibin || "$OPTIONS{APACHE}/cgi-bin";
}
unless (defined $OPTIONS{DO_XS}) {
  $OPTIONS{DO_XS}  = $^O =~ /^(MSWin|dos)/i ? '' : 1;
}

# look for non-root installation 
if (defined $OPTIONS{NONROOT}) {
  $OPTIONS{INSTALLSITEMAN3DIR} = 'none';
  $OPTIONS{INSTALLSITEMAN1DIR} = 'none';
}

# workaround for known bug in FindBin library
$Bin = "." if -f './Makefile.PL' && -T './Makefile.PL';

open F,">$Bin/GGB.def" or die "Can't open $Bin/MusicDB.def for writing: $!";
print F "# This hints file contains configuration information used by the generic browser\n\n";
print F "# To reconfigure, run perl Makefile.PL `cat MusicDB.def`\n\n";
foreach (keys %OPTIONS) {
  print F "$_=$OPTIONS{$_}\n";
}
print F "VERSION=$VERSION\n";
close F;

#print STDERR <<END;
#----------------------------------------------
#                File Paths

#END
#;
#foreach (@OPTIONS) {
#  printf STDERR "%7s %s\n",$_,$OPTIONS{$_};
#}
#print STDERR <<END;

#(Run perl Makefile.PL -h for help on changing)
#----------------------------------------------
#END
#;


###### See lib/ExtUtils/MakeMaker.pm for details of how to influence
###### the contents of the Makefile that is written.
########WriteMakefile(
########	      'NAME'	     => 'Generic-Genome-Browser',
######	      'VERSION'      => $VERSION,
#	      'PREREQ_PM'    => {
#				 Bio::Perl         => 1.02,
#				 GD                => 2.07,
#				 IO::String        => 0,
#				 Text::Shellwords  => 1.0,
#				}, # e.g., Module::Name => 1.1
#	      PL_FILES       => {
#                                 'install_util/htdocs_install.PLS' => 'install_util/htdocs_install.pl',
#                                 'install_util/cgi_install.PLS' => 'install_util/cgi_install.pl',
#                                 'install_util/conf_install.PLS' => 'install_util/conf_install.pl',
#				 'bin/make_das_conf.PLS' => 'bin/make_das_conf.pl',
#				 'bin/process_sgd.PLS' => 'bin/process_sgd.pl',
#				 'bin/process_gadfly.PLS' => 'bin/process_gadfly.pl',
#				 'bin/process_wormbase.PLS' => 'bin/process_wormbase.pl',
#				 'bin/ucsc_genes2gff.PLS' => 'bin/ucsc_genes2gff.pl',
#				 'bin/load_genbank.PLS' => 'bin/load_genbank.pl',
#				 'bin/register_moby_services.PLS' => 'bin/register_moby_services.pl',
#				 'install_util/gbrowse_ppm_install.PLS' => 'gbrowse_ppm_install.pl',
#				 'cgi-bin/gbrowse.PLS'  => 'cgi-bin/gbrowse',
#				 'cgi-bin/gbrowse_syn.PLS'  => 'cgi-bin/gbrowse_syn',
#				 'cgi-bin/gbrowse_img.PLS'  => 'cgi-bin/gbrowse_img',
#				 'cgi-bin/gbrowse_details.PLS'  => 'cgi-bin/gbrowse_details',
#				 'cgi-bin/gbrowse_est.PLS'  => 'cgi-bin/gbrowse_est',
#				 'cgi-bin/gbrowse_moby.PLS'  => 'cgi-bin/gbrowse_moby',
#				 'cgi-bin/moby_server.PLS'  => 'cgi-bin/moby_server',
#				 'cgi-bin/das.PLS'          => 'cgi-bin/das',
#				 'conf/MobyServices/GbrowseServices.PMS'  => 'conf/MobyServices/GbrowseServices.pm',
#				 },
#	      EXE_FILES      => [
#				 'bin/register_moby_services.pl',
#				 'bin/make_das_conf.pl',
#				 'bin/process_wormbase.pl',
#				 'bin/process_sgd.pl',
#				 'bin/process_gadfly.pl',
#                                 'bin/load_genbank.pl',
#				],
#	      'LIBS'	     => [''], # e.g., '-lm'
#	      'LIB'          => $OPTIONS{LIB}, # custom location for perl modules
#	      'DIR'          => $OPTIONS{DO_XS} ? ['libalign'] : [],
#	      'DEFINE'	     => '',
#	      'INC'	     => '', # e.g., '-I/usr/include/other'
######              ($] ge '5.005') ? (
######                  'AUTHOR'   => 'Lincoln Stein (lstein@cshl.org)',
#####                  'ABSTRACT' => 'A CGI-driven browser for genomic annotations.',
######                                ) : (),
#              'INSTALLSITEMAN1DIR' => $OPTIONS{INSTALLSITEMAN1DIR}, # don't install man pages for 
#              'INSTALLSITEMAN3DIR' => $OPTIONS{INSTALLSITEMAN3DIR}, # non-root user
#	      'INSTALLSCRIPT'      => $OPTIONS{BIN} || $OPTIONS{INSTALLSCRIPT}
#);

#sub interpolate {
#  my $path = shift;
#  my ($to_expand,$homedir);
#  return $path unless $path =~ m!^~([^/]*)!;
#  eval {
#    if ($to_expand = $1) {
#      $homedir = (getpwnam($to_expand))[7];
#    } else {
#      $homedir = (getpwuid($<))[7];
#    }
#    return $path unless $homedir;

#    $path =~ s!^~[^/]*!$homedir!;
#  };
#  return $path;
#}

#sub MY::clean {
#  package MY;
#  my $inherited = shift->SUPER::clean(@_);
#  $inherited .= "\t-\$(PERL) install_util/make_clean_add.pl\n";
#  $inherited;
#}

#sub MY::dist_dir {
#  package MY;
#  my $inherited = shift->SUPER::dist_dir(@_);
#  $inherited =~ s!^(\s+.+)!\tpod2text docs/pod/INSTALL.pod > INSTALL\n$1!m;
#  $inherited;
#}

#sub MY::processPL {
#  package MY;
#  my $inherited = shift->SUPER::processPL(@_);
#  $inherited =~ s/(cgi-bin\/gbrowse\w*)\s\:\:.+/$1 : FORCE/g;
#  $inherited;
#}

#sub MY::install {
#  package MY;
#  my $inherited = shift->SUPER::install(@_);
#  $inherited =~ s/doc_install/doc_install conf_install cgi_install htdocs_install/;
#  $inherited;
#}

#sub MY::postamble {
#  my $paths;
#  for my $key (keys %OPTIONS) {
#    $paths .= qq('$key=$OPTIONS{$key}' ) if defined $OPTIONS{$key};
#  }
#qq{
#conf_install ::
#	\$(PERL) \"$working_dir/install_util/conf_install.pl\" $paths

#htdocs_install ::
#	\$(PERL) \"$working_dir/install_util/htdocs_install.pl\" $paths

#cgi_install ::
#	\$(PERL) \"$working_dir/install_util/cgi_install.pl\" $paths

#};
#}

#sub MY::ppd {
#  package MY;
#  my $repository = 'http://www.gmod.org/ggb/ppm';
#  my $arch       = 'MSWin32-x86-multi-thread';
#  my $inherited = shift->SUPER::ppd(@_);

#  my $implementation;
#  my $newimp;
#  my $oldMM =0;

##VERY irritating--different versions of ExtUtils::MakeMaker has
##different ways of generating the ppd file.
#  if ($inherited =~ /qq\{(<S.*R>\\n)\}.*qq\{(\\t<I.*\/>\\n)\}.*qq\{(\\t\\t<O.*G>\\n)\}/sg){
#    $oldMM=1;
#    my $xml = $1.$2.$3;
#    #warn "$xml\n";
#    $inherited =~ s/qq\{.*>>/qq{$xml}" >/s;
#  } elsif ($inherited =~ /NOECHO/) {
#    my @la = split /\n/, $inherited;
#    my $grab = 0;
#    for (@la) {
#      $grab++ if (m!<IMPLEMENTATION>!); 
#      if ($grab and $_ =~ /\'(.*)\'/) {
#        $implementation .= "$1\n";
#      }
#      $grab = 0 if (m!</IMPLEMENTATION>!);
#    } 
#  }

#  if ($oldMM and $inherited =~ /(\s*\<IMPLEMENTATION\>.*\<\/IMPLEMENTATION\>)/m) {
#    $implementation = $newimp = $1;
#    $newimp      =~ s/ARCHITECTURE NAME=\\"\S+\\"/ARCHITECTURE NAME=\\"$arch\\"/;
#    $newimp      =~ s/\$\(OSNAME\)/MSWin32/;
#    my $impl58   = $newimp;
#    $impl58      =~ s/\Q$arch\E/$arch\-5\.8/;
#    $newimp      .= "\\n\\t\\t$impl58";
#    $inherited   =~ s/\Q$implementation\E/$newimp/;
#  } elsif (!$oldMM and $implementation) {
#    $newimp      = $implementation;
#    $newimp      =~ s/ARCHITECTURE NAME="\S+"/ARCHITECTURE NAME="$arch"/;
#    $newimp      =~ s/\$\(OSNAME\)/MSWin32/;
#    my $impl58   = $newimp;
#    $impl58      =~ s/\Q$arch\E/$arch\-5\.8/;
#    $newimp      .= $impl58;
#    my @la       = split /\n/, $newimp;
#    for my $line (@la) {
#      $line = qq{\t\$(NOECHO) \$(ECHO) '$line' >> \$(DISTNAME).ppd}; 
#    }

#    my @inherit_array = split /\n/, $inherited;
#    my @newinherit;
#    $inherited = '';
#    for (@inherit_array) {
#      if (/<IMPLEMENTATION>/) {
#        push @newinherit, @la;
#        last;
#      } else {
#        push @newinherit, $_; 
#      }
#    }
#    push @newinherit, qq{\t\$(NOECHO) \$(ECHO) '</SOFTPKG>' >> \$(DISTNAME).ppd\n};
#    $inherited = join "\n", @newinherit;
#  }

#  $inherited .= <<END;

#	\@echo "creating Generic-Genome-Browser.ppd"
#	\@echo "creating gbrowse_ppm_support_files-$VERSION.tar.gz"
#	\@\$(TAR) zcf gbrowse_ppm_support_files-$VERSION.tar.gz --exclude CVS --exclude '*~' --exclude '*.PLS' --exclude '.*' --exclude README --exclude '#*' DISCLAIMER INSTALL docs htdocs conf cgi-bin install_util sample_data contrib
#	\@echo "creating gbrowse_ppm-$VERSION.tar.gz"
#	\@\$(TAR) zcf gbrowse_ppm-$VERSION.tar.gz --exclude man1 --exclude man3 blib
#	\@perl -pi -e 's!HREF=""!HREF="$repository/gbrowse_ppm-$VERSION.tar.gz"!' Generic-Genome-Browser.ppd
#	\@perl -pi -e 's!(\\s*</IMPLEMENTATION>)!\\t\\t<INSTALL HREF="$repository/gbrowse_ppm_install.pl" EXEC="PPM_PERL" />\\n\\1!' Generic-Genome-Browser.ppd
#	\@perl -pi -e 's!Bio-Perl!bioperl!' Generic-Genome-Browser.ppd
#END
#;
#}