Dockerfile_R

FROM rocker/shiny-verse:latest

#update all packages
RUN apt-get update

#upgrade
RUN apt-get upgrade -y

#install additional packages
RUN apt-get update && apt install gpg-agent -y unixodbc apt-utils curl \
    tzdata \
    libudunits2-dev \
    libmagick++-dev\
    libsodium-dev \
    graphviz \
    dirmngr \
    gpg-agent \
    nano \
    vim \
    gawk \
    less \
    libcurl4-openssl-dev \
    libxml2-dev \
    libjpeg-turbo8-dev \
    gdal-bin \
    proj-bin \
    lbzip2 \
    libfftw3-dev \
    libgdal-dev \
    libgeos-dev \
    libgsl0-dev \
    libgl1-mesa-dev \
    libglu1-mesa-dev \
    libhdf4-alt-dev \
    libhdf5-dev \
    libjq-dev \
#    liblwgeom-dev \
    libpq-dev \
    libproj-dev \
    libprotobuf-dev \
    python3-pip\
    libnetcdf-dev \
    libsqlite3-dev \
    libssl-dev \
    netcdf-bin \
    protobuf-compiler \
    sqlite3 \
    tk-dev \
    unixodbc-dev \
    software-properties-common \
    cron

# install the R dependencies
COPY install.R /tmp/
RUN R -f /tmp/install.R

RUN mkdir /utilities
RUN mkdir /utilities/dicts
RUN mkdir /utilities/csv
RUN mkdir /utilities/maps
COPY requirements.txt /utilities/
COPY utilities/* /utilities/
COPY data/cleanCSV/*.csv /utilities/csv/
COPY data/dictionaries/*.json /utilities/dicts/
COPY data/maps/*.gpkg /utilities/maps/
RUN pip3 install -r /utilities/requirements.txt
COPY start.sh /
COPY .env_db /
# RUN cd /utilities && python3 autoload.py


#copy app to image
ADD shinyapp ./shinyapp
#/srv/shiny-server/shinyapp
#RUN ls -ls /srv/shiny-server/shinyapp

# Make all app files readable
RUN chmod -R +r /srv/shiny-server/

# CMD ["R", "-e",  "require(shiny); shiny::runApp('/shinyapp', host='0.0.0.0', port=3838)"]