nvm use 18
yarn install
node server.js --data_url https://cov2tree.nyc3.cdn.digitaloceanspaces.com/tfci-taxonium2.jsonl
node server.js --database_dir ./database/ --port 8080 --ssl --config_json config.json
Non-SSL public:
node server.js --database_dir ./database/ --port 8080 --config_json config_public.json
GISAID:
node server.js --database_dir /mnt/data/amended_data/ --port 8000 --config_json config_gisaid.json
then start the dev server for the front-end and go to e.g. http://localhost:3000/?backend=http://localhost:8000
If you need to regenerate the data run make_pandas.py:
docker pull theosanderson/taxonium_backend:master
docker run -p 80:80 -e "DATA_URL=https://cov2tree.nyc3.cdn.digitaloceanspaces.com/latest_public.jsonl.gz" -e "CONFIG_JSON=config_public.json" theosanderson/taxonium_backend:master
or download that file and instead run something like:
docker run -p 80:80 -v "/Users/MyUserName/Desktop:/mnt/data" -e "DATA_FILE=/mnt/data/public-latest.all.masked.taxonium.jsonl.gz" -e "CONFIG_JSON=config_public.json" theosanderson/taxonium_backend:master
to increase the memory available add -e "MAXMEM=8000" for 8 GB.
Deployment on Vultr with SSL. I used: https://www.vultr.com/docs/how-to-deploy-a-next-js-application-with-vultr-kubernetes-engine-and-vultr-load-balancer/#Part_3___Expose_the_Next_js_application_with_secure_SSL_certificates