import file for multiple selections

[tiagofilipe12]

csv file could be used to make multiple selections, on taxa filters, antibiotic resistance, plasmid families and table view mode.

[tiagofilipe12]

This is somewhat related with #125

[tiagofilipe12]

This is now possible through the API available in projects import. So technically anyone can create a json file like the one generated by pATLAS:

{
  "taxa": false,
  "resistance": false,
  "plasmidfinder": false,
  "virulence": false,
  "intersection": false,
  "union": false,
  "mapping": false,
  "mashscreen": false,
  "assembly": false,
  "consensus": false
}

false instances can be replaced by an array of any strings that produce the parsing. So for instance, if someone wants to add Escherichia coli to through project file import would need something like:

{
  "taxa": ["Escherichia coli"],
  "resistance": false,
  "plasmidfinder": false,
  "virulence": false,
  "intersection": false,
  "union": false,
  "mapping": false,
  "mashscreen": false,
  "assembly": false,
  "consensus": false
}

Maybe this can be improved in the future, however this would require that users are fully aware of the queries they can make and no odd entries are given. For instance, if someone does "E. coli" instead of "Escherichia coli" that would be a wrong query to pATLAS.
Also the API available through projects should be more explicitly declared in pATLAS gitbook.