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Warnings on Julia v1.10.1 when installing or loading packages #802

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jishnub opened this issue Feb 15, 2024 · 12 comments · Fixed by #806
Closed

Warnings on Julia v1.10.1 when installing or loading packages #802

jishnub opened this issue Feb 15, 2024 · 12 comments · Fixed by #806

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@jishnub
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jishnub commented Feb 15, 2024

I'm relatively reliably being able to replicate the following warnings on Julia v1.10.1:

julia> using Plots
 │ Package Plots not found, but a package named Plots is available from a registry. 
 │ Install package?
 │   (@v1.10) pkg> add Plots 
 └ Select environment:
 > 1: `/tmp/jl_lMloNq` (/tmp/jl_lMloNq)
   2: `~/.julia/environments/v1.10/Project.toml` (@v#.#)
   Resolving package versions...
    Updating `/tmp/jl_lMloNq/Project.toml`
  [91a5bcdd] + Plots v1.40.1
    Updating `/tmp/jl_lMloNq/Manifest.toml`
  [d1d4a3ce] + BitFlags v0.1.8
  [944b1d66] + CodecZlib v0.7.4
  [35d6a980] + ColorSchemes v3.24.0
  [3da002f7] + ColorTypes v0.11.4
  [c3611d14] + ColorVectorSpace v0.10.0
  [5ae59095] + Colors v0.12.10
  [34da2185] + Compat v4.12.0
  [f0e56b4a] + ConcurrentUtilities v2.3.1
  [d38c429a] + Contour v0.6.2
  [9a962f9c] + DataAPI v1.16.0
  [864edb3b] + DataStructures v0.18.16
  [8bb1440f] + DelimitedFiles v1.9.1
  [ffbed154] + DocStringExtensions v0.9.3
  [460bff9d] + ExceptionUnwrapping v0.1.10
  [c87230d0] + FFMPEG v0.4.1
  [53c48c17] + FixedPointNumbers v0.8.4
  [59287772] + Formatting v0.4.2
  [28b8d3ca] + GR v0.73.2
  [42e2da0e] + Grisu v1.0.2
  [cd3eb016] + HTTP v1.10.1
  [92d709cd] + IrrationalConstants v0.2.2
  [1019f520] + JLFzf v0.1.7
  [692b3bcd] + JLLWrappers v1.5.0
  [682c06a0] + JSON v0.21.4
  [b964fa9f] + LaTeXStrings v1.3.1
  [23fbe1c1] + Latexify v0.16.1
  [2ab3a3ac] + LogExpFunctions v0.3.26
  [e6f89c97] + LoggingExtras v1.0.3
  [1914dd2f] + MacroTools v0.5.13
  [739be429] + MbedTLS v1.1.9
  [442fdcdd] + Measures v0.3.2
  [e1d29d7a] + Missings v1.1.0
  [77ba4419] + NaNMath v1.0.2
  [4d8831e6] + OpenSSL v1.4.1
  [bac558e1] + OrderedCollections v1.6.3
  [69de0a69] + Parsers v2.8.1
  [b98c9c47] + Pipe v1.3.0
  [ccf2f8ad] + PlotThemes v3.1.0
  [995b91a9] + PlotUtils v1.4.0
  [91a5bcdd] + Plots v1.40.1
  [aea7be01] + PrecompileTools v1.2.0
  [21216c6a] + Preferences v1.4.1
  [3cdcf5f2] + RecipesBase v1.3.4
  [01d81517] + RecipesPipeline v0.6.12
  [189a3867] + Reexport v1.2.2
  [05181044] + RelocatableFolders v1.0.1
  [ae029012] + Requires v1.3.0
  [6c6a2e73] + Scratch v1.2.1
  [992d4aef] + Showoff v1.0.3
  [777ac1f9] + SimpleBufferStream v1.1.0
  [a2af1166] + SortingAlgorithms v1.2.1
  [82ae8749] + StatsAPI v1.7.0
  [2913bbd2] + StatsBase v0.34.2
  [62fd8b95] + TensorCore v0.1.1
  [3bb67fe8] + TranscodingStreams v0.10.3
  [5c2747f8] + URIs v1.5.1
  [1cfade01] + UnicodeFun v0.4.1
  [1986cc42] + Unitful v1.19.0
  [45397f5d] + UnitfulLatexify v1.6.3
  [41fe7b60] + Unzip v0.2.0
  [6e34b625] + Bzip2_jll v1.0.8+1
  [83423d85] + Cairo_jll v1.16.1+1
  [2702e6a9] + EpollShim_jll v0.0.20230411+0
  [2e619515] + Expat_jll v2.5.0+0
  [b22a6f82] + FFMPEG_jll v4.4.4+1
  [a3f928ae] + Fontconfig_jll v2.13.93+0
  [d7e528f0] + FreeType2_jll v2.13.1+0
  [559328eb] + FriBidi_jll v1.0.10+0
  [0656b61e] + GLFW_jll v3.3.9+0
  [d2c73de3] + GR_jll v0.73.2+0
  [78b55507] + Gettext_jll v0.21.0+0
  [7746bdde] + Glib_jll v2.76.5+0
  [3b182d85] + Graphite2_jll v1.3.14+0
  [2e76f6c2] + HarfBuzz_jll v2.8.1+1
  [aacddb02] + JpegTurbo_jll v3.0.1+0
  [c1c5ebd0] + LAME_jll v3.100.1+0
  [88015f11] + LERC_jll v3.0.0+1
  [1d63c593] + LLVMOpenMP_jll v15.0.7+0
  [dd4b983a] + LZO_jll v2.10.1+0
⌅ [e9f186c6] + Libffi_jll v3.2.2+1
  [d4300ac3] + Libgcrypt_jll v1.8.7+0
  [7e76a0d4] + Libglvnd_jll v1.6.0+0
  [7add5ba3] + Libgpg_error_jll v1.42.0+0
  [94ce4f54] + Libiconv_jll v1.17.0+0
  [4b2f31a3] + Libmount_jll v2.35.0+0
⌅ [89763e89] + Libtiff_jll v4.5.1+1
  [38a345b3] + Libuuid_jll v2.36.0+0
  [e7412a2a] + Ogg_jll v1.3.5+1
  [458c3c95] + OpenSSL_jll v3.0.13+0
  [91d4177d] + Opus_jll v1.3.2+0
  [30392449] + Pixman_jll v0.42.2+0
  [c0090381] + Qt6Base_jll v6.5.3+1
  [a44049a8] + Vulkan_Loader_jll v1.3.243+0
  [a2964d1f] + Wayland_jll v1.21.0+1
  [2381bf8a] + Wayland_protocols_jll v1.31.0+0
  [02c8fc9c] + XML2_jll v2.12.2+0
  [aed1982a] + XSLT_jll v1.1.34+0
  [ffd25f8a] + XZ_jll v5.4.5+0
  [f67eecfb] + Xorg_libICE_jll v1.0.10+1
  [c834827a] + Xorg_libSM_jll v1.2.3+0
  [4f6342f7] + Xorg_libX11_jll v1.8.6+0
  [0c0b7dd1] + Xorg_libXau_jll v1.0.11+0
  [935fb764] + Xorg_libXcursor_jll v1.2.0+4
  [a3789734] + Xorg_libXdmcp_jll v1.1.4+0
  [1082639a] + Xorg_libXext_jll v1.3.4+4
  [d091e8ba] + Xorg_libXfixes_jll v5.0.3+4
  [a51aa0fd] + Xorg_libXi_jll v1.7.10+4
  [d1454406] + Xorg_libXinerama_jll v1.1.4+4
  [ec84b674] + Xorg_libXrandr_jll v1.5.2+4
  [ea2f1a96] + Xorg_libXrender_jll v0.9.10+4
  [14d82f49] + Xorg_libpthread_stubs_jll v0.1.1+0
  [c7cfdc94] + Xorg_libxcb_jll v1.15.0+0
  [cc61e674] + Xorg_libxkbfile_jll v1.1.2+0
  [e920d4aa] + Xorg_xcb_util_cursor_jll v0.1.4+0
  [12413925] + Xorg_xcb_util_image_jll v0.4.0+1
  [2def613f] + Xorg_xcb_util_jll v0.4.0+1
  [975044d2] + Xorg_xcb_util_keysyms_jll v0.4.0+1
  [0d47668e] + Xorg_xcb_util_renderutil_jll v0.3.9+1
  [c22f9ab0] + Xorg_xcb_util_wm_jll v0.4.1+1
  [35661453] + Xorg_xkbcomp_jll v1.4.6+0
  [33bec58e] + Xorg_xkeyboard_config_jll v2.39.0+0
  [c5fb5394] + Xorg_xtrans_jll v1.5.0+0
  [3161d3a3] + Zstd_jll v1.5.5+0
  [35ca27e7] + eudev_jll v3.2.9+0
  [214eeab7] + fzf_jll v0.43.0+0
  [1a1c6b14] + gperf_jll v3.1.1+0
  [a4ae2306] + libaom_jll v3.4.0+0
  [0ac62f75] + libass_jll v0.15.1+0
  [2db6ffa8] + libevdev_jll v1.11.0+0
  [f638f0a6] + libfdk_aac_jll v2.0.2+0
  [36db933b] + libinput_jll v1.18.0+0
  [b53b4c65] + libpng_jll v1.6.40+0
  [f27f6e37] + libvorbis_jll v1.3.7+1
  [009596ad] + mtdev_jll v1.1.6+0
  [1270edf5] + x264_jll v2021.5.5+0
  [dfaa095f] + x265_jll v3.5.0+0
  [d8fb68d0] + xkbcommon_jll v1.4.1+1
  [0dad84c5] + ArgTools v1.1.1
  [56f22d72] + Artifacts
  [2a0f44e3] + Base64
  [ade2ca70] + Dates
  [f43a241f] + Downloads v1.6.0
  [7b1f6079] + FileWatching
  [b77e0a4c] + InteractiveUtils
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2
  [8f399da3] + Libdl
  [37e2e46d] + LinearAlgebra
  [56ddb016] + Logging
  [d6f4376e] + Markdown
  [a63ad114] + Mmap
  [ca575930] + NetworkOptions v1.2.0
  [44cfe95a] + Pkg v1.10.0
  [de0858da] + Printf
  [3fa0cd96] + REPL
  [9a3f8284] + Random
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization
  [6462fe0b] + Sockets
  [2f01184e] + SparseArrays v1.10.0
  [10745b16] + Statistics v1.10.0
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test
  [cf7118a7] + UUIDs
  [4ec0a83e] + Unicode
  [e66e0078] + CompilerSupportLibraries_jll v1.1.0+0
  [deac9b47] + LibCURL_jll v8.4.0+0
  [e37daf67] + LibGit2_jll v1.6.4+0
  [29816b5a] + LibSSH2_jll v1.11.0+1
  [c8ffd9c3] + MbedTLS_jll v2.28.2+1
  [14a3606d] + MozillaCACerts_jll v2023.1.10
  [4536629a] + OpenBLAS_jll v0.3.23+4
  [05823500] + OpenLibm_jll v0.8.1+2
  [efcefdf7] + PCRE2_jll v10.42.0+1
  [bea87d4a] + SuiteSparse_jll v7.2.1+1
  [83775a58] + Zlib_jll v1.2.13+1
  [8e850b90] + libblastrampoline_jll v5.8.0+1
  [8e850ede] + nghttp2_jll v1.52.0+1
  [3f19e933] + p7zip_jll v17.4.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

(jl_lMloNq) pkg> add PyPlot
   Resolving package versions...
    Updating `/tmp/jl_lMloNq/Project.toml`
  [d330b81b] + PyPlot v2.11.2
    Updating `/tmp/jl_lMloNq/Manifest.toml`
 ┌ Warning: /cache/build/default-maughin-0/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/OpenLibm_jll/src is not an existing directory, Revise is not watching
└ @ Revise /home/jishnu/.julia/packages/Revise/FaTes/src/packagedef.jl:573
┌ Warning: /home/jishnu/packages/julias/julia-1.10/share/julia/stdlib/v1.10/Statistics/src/Statistics.jl/src is not an existing directory, Revise is not watching
└ @ Revise /home/jishnu/.julia/packages/Revise/FaTes/src/packagedef.jl:573
┌ Warning: /home/jishnu/packages/julias/julia-1.10/share/julia/stdlib/v1.10/CompilerSupportLibraries_jll/src/CompilerSupportLibraries_jll.jl/src is not an existing directory, Revise is not watching
└ @ Revise /home/jishnu/.julia/packages/Revise/FaTes/src/packagedef.jl:573
┌ Warning: /cache/build/default-maughin-0/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/SuiteSparse_jll/src is not an existing directory, Revise is not watching
└ @ Revise /home/jishnu/.julia/packages/Revise/FaTes/src/packagedef.jl:573
┌ Warning: /cache/build/default-maughin-0/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/Zlib_jll/src is not an existing directory, Revise is not watching
└ @ Revise /home/jishnu/.julia/packages/Revise/FaTes/src/packagedef.jl:573
┌ Warning: /cache/build/default-maughin-0/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/PCRE2_jll/src is not an existing directory, Revise is not watching
└ @ Revise /home/jishnu/.julia/packages/Revise/FaTes/src/packagedef.jl:573
┌ Warning: /cache/build/default-maughin-0/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/SparseArrays/src is not an existing directory, Revise is not watching
└ @ Revise /home/jishnu/.julia/packages/Revise/FaTes/src/packagedef.jl:573
┌ Warning: /cache/build/default-maughin-0/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/SparseArrays/src/solvers is not an existing directory, Revise is not watching
└ @ Revise /home/jishnu/.julia/packages/Revise/FaTes/src/packagedef.jl:573
┌ Warning: /cache/build/default-maughin-0/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/SparseArrays/src/solvers/lib is not an existing directory, Revise is not watching
└ @ Revise /home/jishnu/.julia/packages/Revise/FaTes/src/packagedef.jl:573
 [8f4d0f93] + Conda v1.10.0
  [438e738f] + PyCall v1.96.4
  [d330b81b] + PyPlot v2.11.2
  [81def892] + VersionParsing v1.3.0

julia> plotly()
┌ Warning: /cache/build/default-maughin-0/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/SparseArrays/src/abstractsparse.jl no longer exists, deleted all methods
└ @ Revise ~/.julia/packages/Revise/FaTes/src/packagedef.jl:666
┌ Warning: /cache/build/default-maughin-0/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/SparseArrays/src/sparseconvert.jl no longer exists, deleted all methods
└ @ Revise ~/.julia/packages/Revise/FaTes/src/packagedef.jl:666
┌ Warning: /cache/build/default-maughin-0/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/SparseArrays/src/higherorderfns.jl no longer exists, deleted all methods
└ @ Revise ~/.julia/packages/Revise/FaTes/src/packagedef.jl:666
┌ Warning: /home/jishnu/packages/julias/julia-1.10/share/julia/stdlib/v1.10/CompilerSupportLibraries_jll/src/CompilerSupportLibraries_jll.jl/src/CompilerSupportLibraries_jll.jl no longer exists, deleted all methods
└ @ Revise ~/.julia/packages/Revise/FaTes/src/packagedef.jl:666
┌ Warning: /cache/build/default-maughin-0/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/SparseArrays/src/sparsematrix.jl no longer exists, deleted all methods
└ @ Revise ~/.julia/packages/Revise/FaTes/src/packagedef.jl:666
┌ Warning: /cache/build/default-maughin-0/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/SparseArrays/src/sparsevector.jl no longer exists, deleted all methods
└ @ Revise ~/.julia/packages/Revise/FaTes/src/packagedef.jl:666
┌ Warning: /cache/build/default-maughin-0/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/SparseArrays/src/deprecated.jl no longer exists, deleted all methods
└ @ Revise ~/.julia/packages/Revise/FaTes/src/packagedef.jl:666
┌ Warning: /cache/build/default-maughin-0/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/OpenLibm_jll/src/OpenLibm_jll.jl no longer exists, deleted all methods
└ @ Revise ~/.julia/packages/Revise/FaTes/src/packagedef.jl:666
┌ Warning: /cache/build/default-maughin-0/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/SuiteSparse_jll/src/SuiteSparse_jll.jl no longer exists, deleted all methods
└ @ Revise ~/.julia/packages/Revise/FaTes/src/packagedef.jl:666
┌ Warning: /home/jishnu/packages/julias/julia-1.10/share/julia/stdlib/v1.10/Statistics/src/Statistics.jl/src/Statistics.jl no longer exists, deleted all methods
└ @ Revise ~/.julia/packages/Revise/FaTes/src/packagedef.jl:666
┌ Warning: /cache/build/default-maughin-0/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/PCRE2_jll/src/PCRE2_jll.jl no longer exists, deleted all methods
└ @ Revise ~/.julia/packages/Revise/FaTes/src/packagedef.jl:666
┌ Warning: /cache/build/default-maughin-0/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/SparseArrays/src/SparseArrays.jl no longer exists, deleted all methods
└ @ Revise ~/.julia/packages/Revise/FaTes/src/packagedef.jl:666
┌ Warning: /cache/build/default-maughin-0/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/SparseArrays/src/readonly.jl no longer exists, deleted all methods
└ @ Revise ~/.julia/packages/Revise/FaTes/src/packagedef.jl:666
┌ Warning: /cache/build/default-maughin-0/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/SparseArrays/src/linalg.jl no longer exists, deleted all methods
└ @ Revise ~/.julia/packages/Revise/FaTes/src/packagedef.jl:666
┌ Warning: /cache/build/default-maughin-0/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/SparseArrays/src/solvers/spqr.jl no longer exists, deleted all methods
└ @ Revise ~/.julia/packages/Revise/FaTes/src/packagedef.jl:666
┌ Warning: /cache/build/default-maughin-0/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/Zlib_jll/src/Zlib_jll.jl no longer exists, deleted all methods
└ @ Revise ~/.julia/packages/Revise/FaTes/src/packagedef.jl:666
┌ Warning: /cache/build/default-maughin-0/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/SparseArrays/src/solvers/LibSuiteSparse.jl no longer exists, deleted all methods
└ @ Revise ~/.julia/packages/Revise/FaTes/src/packagedef.jl:666
┌ Warning: /cache/build/default-maughin-0/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/SparseArrays/src/solvers/lib/x86_64-linux-gnu.jl no longer exists, deleted all methods
└ @ Revise ~/.julia/packages/Revise/FaTes/src/packagedef.jl:666
┌ Warning: /cache/build/default-maughin-0/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/SparseArrays/src/solvers/umfpack.jl no longer exists, deleted all methods
└ @ Revise ~/.julia/packages/Revise/FaTes/src/packagedef.jl:666
┌ Warning: /cache/build/default-maughin-0/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/SparseArrays/src/solvers/cholmod.jl no longer exists, deleted all methods
└ @ Revise ~/.julia/packages/Revise/FaTes/src/packagedef.jl:666
┌ Warning: Failed to load integration with PlotlyBase & PlotlyKaleido.
│   exception =
│    ArgumentError: Package PlotlyKaleido not found in current path.
│    - Run `import Pkg; Pkg.add("PlotlyKaleido")` to install the PlotlyKaleido package.
│    Stacktrace:
│      [1] macro expansion
│        @ ./loading.jl:1772 [inlined]
│      [2] macro expansion
│        @ ./lock.jl:267 [inlined]
│      [3] __require(into::Module, mod::Symbol)
│        @ Base ./loading.jl:1753
│      [4] #invoke_in_world#3
│        @ ./essentials.jl:926 [inlined]
│      [5] invoke_in_world
│        @ ./essentials.jl:923 [inlined]
│      [6] require(into::Module, mod::Symbol)
│        @ Base ./loading.jl:1746
│      [7] top-level scope
│        @ ~/.julia/packages/Plots/HyyIK/src/backends.jl:566
│      [8] eval
│        @ ./boot.jl:385 [inlined]
│      [9] _initialize_backend(pkg::Plots.PlotlyBackend)
│        @ Plots ~/.julia/packages/Plots/HyyIK/src/backends.jl:564
│     [10] backend
│        @ ~/.julia/packages/Plots/HyyIK/src/backends.jl:244 [inlined]
│     [11] plotly()
│        @ Plots ~/.julia/packages/Plots/HyyIK/src/backends.jl:87
│     [12] top-level scope
│        @ REPL[4]:1
│     [13] eval
│        @ ./boot.jl:385 [inlined]
│     [14] eval_user_input(ast::Any, backend::REPL.REPLBackend, mod::Module)
│        @ REPL ~/packages/julias/julia-1.10/share/julia/stdlib/v1.10/REPL/src/REPL.jl:150
│     [15] repl_backend_loop(backend::REPL.REPLBackend, get_module::Function)
│        @ REPL ~/packages/julias/julia-1.10/share/julia/stdlib/v1.10/REPL/src/REPL.jl:246
│     [16] start_repl_backend(backend::REPL.REPLBackend, consumer::Any; get_module::Function)
│        @ REPL ~/packages/julias/julia-1.10/share/julia/stdlib/v1.10/REPL/src/REPL.jl:231
│     [17] run_repl(repl::REPL.AbstractREPL, consumer::Any; backend_on_current_task::Bool, backend::Any)
│        @ REPL ~/packages/julias/julia-1.10/share/julia/stdlib/v1.10/REPL/src/REPL.jl:389
│     [18] run_repl(repl::REPL.AbstractREPL, consumer::Any)
│        @ REPL ~/packages/julias/julia-1.10/share/julia/stdlib/v1.10/REPL/src/REPL.jl:375
│     [19] (::Base.var"#1013#1015"{Bool, Bool, Bool})(REPL::Module)
│        @ Base ./client.jl:432
│     [20] #invokelatest#2
│        @ ./essentials.jl:892 [inlined]
│     [21] invokelatest
│        @ ./essentials.jl:889 [inlined]
│     [22] run_main_repl(interactive::Bool, quiet::Bool, banner::Bool, history_file::Bool, color_set::Bool)
│        @ Base ./client.jl:416
│     [23] exec_options(opts::Base.JLOptions)
│        @ Base ./client.jl:333
│     [24] _start()
│        @ Base ./client.jl:552
└ @ Plots ~/.julia/packages/Plots/HyyIK/src/backends.jl:574
Plots.PlotlyBackend()

These seem to persist even if I delete the compiled cache and the package directories, as well as the default environment manifest.
@mestinso
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I'm seeing the same here. I'm willing to provide warning outputs or test any potential fixes if helpful.

@cgarling
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Same here

@jaakkor2
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I bisected this to JuliaLang/julia#52637, 2481fdf95c687799b28640c7cc863deb7d942181.
Similar symptoms on 1.10.1 and nightly.

More reports on discourse https://discourse.julialang.org/t/revise-warnings-on-v1-10-1/110237/9

CC: @KristofferC

@felixcremer
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This makes the julia process partially broken, because for example the fallback method for mean(::AbstractArray) is deleted and then I can't plot anymore with Makie.

@KristofferC
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I bisected this to JuliaLang/julia#52637, 2481fdf95c687799b28640c7cc863deb7d942181.

Thanks, I will try to understand what's going on.

@KristofferC KristofferC mentioned this issue Feb 20, 2024
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@KristofferC
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I cannot reproduce this locally so I will just revert that PR for 1.10.2. I don't see anything wrong with it though so perhaps this is a bug in Revise.

@KristofferC
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KristofferC commented Feb 20, 2024 •
edited
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┌ Warning: /cache/build/default-maughin-0/julialang/julia-release-1-dot-10/usr/share/julia/stdlib/v1.10/OpenLibm_jll/src is not an existing directory, Revise is not watching

Looks like it is finding the build path of julia, not sure why.

┌ Warning: /home/jishnu/packages/julias/julia-1.10/share/julia/stdlib/v1.10/Statistics/src/Statistics.jl/src is not an existing directory, Revise is not watching

Looks like it thinks it would get the directory of the package somewhere but instead got the full path including src/Statistics.jl/.

@KristofferC
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I might understand from:

julia> id_stdlib = Base.identify_package("SparseArrays")
SparseArrays [2f01184e-e22b-5df5-ae63-d93ebab69eaf]

julia> id_pkg = Base.identify_package("Example")
Example [7876af07-990d-54b4-ab0e-23690620f79a]

julia> Base.explicit_manifest_uuid_path(Base.active_project(), id_stdlib)
"/Users/kristoffercarlsson/.julia/juliaup/julia-1.10.1+0.aarch64.apple.darwin14/share/julia/stdlib/v1.10/SparseArrays/src/SparseArrays.jl"

julia> Base.explicit_manifest_uuid_path(Base.active_project(), id_pkg)
"/Users/kristoffercarlsson/.julia/packages/Example/aqsx3"

There is an inconsistency there that with the stdlib we get a path to the entry file while with the normal package we get the path to the folder. For Base itself this turns out to not matter but Revise uses some internals from code loading:

Revise.jl/src/pkgs.jl

Line 410 in dbbeb35

path = Base.explicit_manifest_entry_path(manifest_file, id, entry)

@KristofferC KristofferC mentioned this issue Feb 20, 2024
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@KristofferC
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Can people try out #806? I'm having some troubles reproducing this myself so some help would be good.

@KristofferC
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3.5.14 is on the way through the registration system. If someone can repro this with that Revise version please comment

@musoke
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musoke commented Feb 20, 2024

3.5.14 seems to work for me

@mestinso
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Seems to be resolved here too, thanks!

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@KristofferC @jaakkor2 @jishnub @mestinso @musoke @felixcremer @cgarling