plot replicates against each other

[tischi]

is this possible?

[tischi]

measurement:
batch 1:
batch 2:
order by:

x <- htm@data$Count_Nuclei[which(htm@data$Metadata_plate=="EMBO_2012_Group1")]
y <- htm@data$Count_Nuclei[which(htm@data$Metadata_plate=="EMBO_2012_Group2")]
x_wellnum <- htm@data$Metadata_wellNum[which(htm@data$Metadata_plate=="EMBO_2012_Group1")]
y_wellnum <- htm@data$Metadata_wellNum[which(htm@data$Metadata_plate=="EMBO_2012_Group2")]
plot(x[order(x_order)], y[order(y_order)])

[tischi]

htmCorrelationPlot(htm, "Metadata_wellNum", "Metadata_wellNum", "EMBO_2012_Group1", "EMBO_2012_Group2")