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MANIFEST
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MANIFEST
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Build.PL
CHANGES
lib/Bio/ToolBox.pm
lib/Bio/ToolBox/big_helper.pm
lib/Bio/ToolBox/Data.pm
lib/Bio/ToolBox/Data/core.pm
lib/Bio/ToolBox/Data/file.pm
lib/Bio/ToolBox/Data/Feature.pm
lib/Bio/ToolBox/Data/Iterator.pm
lib/Bio/ToolBox/Data/Stream.pm
lib/Bio/ToolBox/GeneTools.pm
lib/Bio/ToolBox/db_helper.pm
lib/Bio/ToolBox/db_helper/alignment_callbacks.pm
lib/Bio/ToolBox/db_helper/bam.pm
lib/Bio/ToolBox/db_helper/bigbed.pm
lib/Bio/ToolBox/db_helper/big.pm
lib/Bio/ToolBox/db_helper/bigwig.pm
lib/Bio/ToolBox/db_helper/constants.pm
lib/Bio/ToolBox/db_helper/config.pm
lib/Bio/ToolBox/db_helper/hts.pm
lib/Bio/ToolBox/db_helper/seqfasta.pm
lib/Bio/ToolBox/db_helper/useq.pm
lib/Bio/ToolBox/db_helper/wiggle.pm
lib/Bio/ToolBox/Parser.pm
lib/Bio/ToolBox/Parser/bed.pm
lib/Bio/ToolBox/Parser/gff.pm
lib/Bio/ToolBox/Parser/ucsc.pm
lib/Bio/ToolBox/Parser/ucsc/builder.pm
lib/Bio/ToolBox/SeqFeature.pm
lib/Bio/ToolBox/utility.pm
LICENSE
MANIFEST This list of files
META.json
META.yml
README
scripts/bam2wig.pl
scripts/correlate_position_data.pl
scripts/data2bed.pl
scripts/data2fasta.pl
scripts/data2gff.pl
scripts/data2wig.pl
scripts/db_setup.pl
scripts/db_types.pl
scripts/get_binned_data.pl
scripts/get_datasets.pl
scripts/get_feature_info.pl
scripts/get_features.pl
scripts/get_gene_regions.pl
scripts/get_intersecting_features.pl
scripts/get_relative_data.pl
scripts/join_data_file.pl
scripts/manipulate_datasets.pl
scripts/manipulate_wig.pl
scripts/merge_datasets.pl
scripts/pull_features.pl
scripts/split_data_file.pl
scripts/ucsc_table2gff3.pl
t/00.utility.t
t/01.Data.t
t/02.parser.t
t/03.GeneTools.t
t/04.DB.t
t/05.Bam-HTS.t
t/05.Bam-Samtools.t
t/06.BigBed-UCSC.t
t/06.BigBed-big.t
t/07.BigWig-UCSC.t
t/07.BigWig-big.t
t/08.BigWigSet-UCSC.t
t/08.BigWigSet-big.t
t/09.USeq.t
t/10.Wiggle.t
t/Data/biotoolbox.cfg
t/Data/chrI.gff3
t/Data/ensemblSource.txt
t/Data/ensemblToGeneName.txt
t/Data/ensGene.txt
t/Data/ensGene.bed
t/Data/ensGene.gtf
t/Data/H3K4me3.narrowPeak
t/Data/H3K27ac.bed
t/Data/sample.bed
t/Data/sample1.bam
t/Data/sample1.bam.bai
t/Data/sample1.bb
t/Data/sample2.bw
t/Data/sample2.gff3
t/Data/sample2.wib
t/Data/sample3/metadata.txt
t/Data/sample3/sample3_f.bw
t/Data/sample3/sample3_r.bw
t/Data/sample3.useq
t/Data/sequence.fa