NEWS

This repo is archieved. A new version of RCy3, RCy3 2.0, is developed here:
https://github.com/cytoscape/RCy3

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NEW RELEASE
    o updated the edge and node attributes to include boolean variables
    o updated rule based functions: you can now apply them to any visual
      style using the parameter vizmap.style.name
    o created function setDefaultEdgeLineStyle.Rd
    o CyREST bug whereby rule-based functions overwrite direct functions
      got fixed from CyREST 3.5.0+ 


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OLD RELEASES


RELEASE VERSION 0.99.0
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PERSISTING ISSUES
    o direct functions are currently overwritten by rule-based functions.
      Once CyREST updates, this issue will be fixed.

NEW FEATURES
    o added setDefaultEdgeSourceArrowColor to set the default arrow color
    o added setDefaultEdgeTargetArrowColor to set the default target arrow color
    o added two modes (interpolate and lookup) to setEdgeSourceArrowColorRule
    o added two modes (interpolate and lookup) to setEdgeTargetArrowColorRule
    o redraw is no longer required as the Cytoscape interface updates automatically.
    o lockNodeDimensions is no longer required. Functions that required locked node
      dimensions do this automatically.
    
    
SIGNIFICANT USER-VISIBLE CHANGES

    o removed new.CystoscapeWindow. CytoscapeWindow does the same job now.
    o removed setEdgeLabelWidthDirect
    o removed setEdgeLabelPositionDirect
    o removed setEdgeSourceArrowOpacityDirect
    o removed setEdgeTargetArrowOpacityDirect
    o removed set.node.or.edge.properties
    o removed getViewCoordinates
    o removed setWindowSize
    o removed fitSelectedContent
    o removed raiseWindow
    o removed setTooltipDismissDelay
    o removed setTooltipInitialDelay
    o removed clearMsg
    o removed msg
    o removed createWindowFromSelection
    o removed setNodeImageDirect
    o new names for features:
> getNodeShapes(cw)
[1] "DIAMOND"         "HEXAGON"         "OCTAGON"         "VEE"            
[5] "TRIANGLE"        "PARALLELOGRAM"   "ELLIPSE"         "RECTANGLE"      
[9] "ROUND_RECTANGLE"
> getLayoutNames(cw)
 [1] "attribute-circle"      "stacked-node-layout"   "degree-circle"        
 [4] "circular"              "attributes-layout"     "kamada-kawai"         
 [7] "force-directed"        "grid"                  "hierarchical"         
[10] "fruchterman-rheingold" "isom"
> getLineStyles(cw)
 [1] "LONG_DASH"        "PARALLEL_LINES"   "FORWARD_SLASH"    "DASH_DOT"        
 [5] "BACKWARD_SLASH"   "VERTICAL_SLASH"   "CONTIGUOUS_ARROW" "SEPARATE_ARROW"  
 [9] "SOLID"            "EQUAL_DASH"       "ZIGZAG"           "DOT"             
[13] "SINEWAVE"    
> getArrowShapes(cw)
[1] "DIAMOND"     "NONE"        "T"           "DELTA"       "CIRCLE"     
[6] "ARROW"       "HALF_TOP"    "HALF_BOTTOM"