From e44cea134cd963f3d466d8e34bdf4274eafa5f68 Mon Sep 17 00:00:00 2001
From: Michael Chirico <michaelchirico4@gmail.com>
Date: Sun, 21 Apr 2024 19:15:13 -0700
Subject: [PATCH] seq(length=)

---
 pkg/caret/R/classDist.R                   | 2 +-
 pkg/caret/R/createDataPartition.R         | 4 ++--
 pkg/caret/R/gafs.R                        | 2 +-
 pkg/caret/R/lift.R                        | 2 +-
 pkg/caret/R/misc.R                        | 6 +++---
 pkg/caret/R/twoClassSim.R                 | 2 +-
 pkg/caret/tests/testthat/test_resamples.R | 2 +-
 7 files changed, 10 insertions(+), 10 deletions(-)

diff --git a/pkg/caret/R/classDist.R b/pkg/caret/R/classDist.R
index 98ae1563e..cbe1fd3d8 100644
--- a/pkg/caret/R/classDist.R
+++ b/pkg/caret/R/classDist.R
@@ -75,7 +75,7 @@ classDist.default <- function(x, y, groups = 5,
   if(is.numeric(y))
     {
       y <- cut(y,
-               unique(quantile(y, probs = seq(0, 1, length = groups + 1))),
+               unique(quantile(y, probs = seq(0, 1, length.out = groups + 1))),
                include.lowest = TRUE)
       classLabels <- paste(round((1:groups)/groups*100, 2))
       y <- factor(y)
diff --git a/pkg/caret/R/createDataPartition.R b/pkg/caret/R/createDataPartition.R
index 9c31f2f14..4eb78cf4a 100644
--- a/pkg/caret/R/createDataPartition.R
+++ b/pkg/caret/R/createDataPartition.R
@@ -116,7 +116,7 @@ createDataPartition <- function (y, times = 1, p = 0.5, list = TRUE, groups = mi
 
   if(is.numeric(y)) {
     y <- cut(y,
-             unique(quantile(y, probs = seq(0, 1, length = groups))),
+             unique(quantile(y, probs = seq(0, 1, length.out = groups))),
              include.lowest = TRUE)
   } else {
     xtab <- table(y)
@@ -180,7 +180,7 @@ createDataPartition <- function (y, times = 1, p = 0.5, list = TRUE, groups = mi
       cuts <- floor(length(y)/k)
       if(cuts < 2) cuts <- 2
       if(cuts > 5) cuts <- 5
-      breaks <- unique(quantile(y, probs = seq(0, 1, length = cuts)))
+      breaks <- unique(quantile(y, probs = seq(0, 1, length.out = cuts)))
       y <- cut(y, breaks, include.lowest = TRUE)
     }
 
diff --git a/pkg/caret/R/gafs.R b/pkg/caret/R/gafs.R
index acee07396..96bcc76d7 100644
--- a/pkg/caret/R/gafs.R
+++ b/pkg/caret/R/gafs.R
@@ -136,7 +136,7 @@ ga_func_check <- function(x) {
 #' @export gafs_initial
 gafs_initial <- function (vars, popSize, ...)  {
   x <- matrix(NA, nrow = popSize, ncol = vars)
-  probs <- seq(.9, .1, length = popSize)
+  probs <- seq(.9, .1, length.out = popSize)
   for(i in 1:popSize){
     x[i,] <- sample(0:1, replace = TRUE,
                     size = vars,
diff --git a/pkg/caret/R/lift.R b/pkg/caret/R/lift.R
index 8cb814845..e397750b3 100644
--- a/pkg/caret/R/lift.R
+++ b/pkg/caret/R/lift.R
@@ -233,7 +233,7 @@ liftCalc <- function(x, class = levels(x$liftClassVar)[1], cuts = NULL) {
   baseline <- mean(x$liftClassVar == class)
   if(!is.null(cuts)) {
     if(length(cuts) == 1) {
-      cuts <- rev(seq(0, 1, length = cuts))
+      cuts <- rev(seq(0, 1, length.out = cuts))
     } else {
       cuts <- unique(c(1, sort(cuts, decreasing = TRUE), 0))
     }
diff --git a/pkg/caret/R/misc.R b/pkg/caret/R/misc.R
index 4b6db9f04..6e5c1f225 100644
--- a/pkg/caret/R/misc.R
+++ b/pkg/caret/R/misc.R
@@ -400,10 +400,10 @@ var_seq <- function(p, classification = FALSE, len = 3) {
   } else {
     if(p <= len)
     {
-      tuneSeq <- floor(seq(2, to = p, length = p))
+      tuneSeq <- floor(seq(2, to = p, length.out = p))
     } else {
-      if(p < 500 ) tuneSeq <- floor(seq(2, to = p, length = len))
-      else tuneSeq <- floor(2^seq(1, to = log(p, base = 2), length = len))
+      if(p < 500 ) tuneSeq <- floor(seq(2, to = p, length.out = len))
+      else tuneSeq <- floor(2^seq(1, to = log(p, base = 2), length.out = len))
     }
   }
   if(any(table(tuneSeq) > 1)) {
diff --git a/pkg/caret/R/twoClassSim.R b/pkg/caret/R/twoClassSim.R
index a2e9bb4ce..a78a1bcfd 100644
--- a/pkg/caret/R/twoClassSim.R
+++ b/pkg/caret/R/twoClassSim.R
@@ -202,7 +202,7 @@ twoClassSim <- function(n = 100,
     2*sin(pi*tmpData$Nonlinear2* tmpData$Nonlinear3) 
   
   if(linearVars > 0) {
-    lin <- seq(10, 1, length = linearVars)/4 
+    lin <- seq(10, 1, length.out = linearVars)/4 
     lin <- lin * rep(c(-1, 1), floor(linearVars)+1)[1:linearVars] 
     for(i in seq(along.with = lin)) lp <- lp + tmpData[, i+3]*lin[i]
   }
diff --git a/pkg/caret/tests/testthat/test_resamples.R b/pkg/caret/tests/testthat/test_resamples.R
index d97d516ef..1d3629ec4 100644
--- a/pkg/caret/tests/testthat/test_resamples.R
+++ b/pkg/caret/tests/testthat/test_resamples.R
@@ -41,7 +41,7 @@ test_that('resample calculations', {
 
 test_that('test group-k-fold', {
   get_data <- function(n = 500) {
-    prevalence <- seq(.1, .9, length = 26)
+    prevalence <- seq(.1, .9, length.out = 26)
     dat <- sample(letters, size = n, replace = TRUE, prob = sample(prevalence))
     data.frame(grp = dat, stringsAsFactors = TRUE)
   }