Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
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May 17, 2019 - Python
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amplicon
Here are 18 public repositories matching this topic...
FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
ncbi-taxonomy taxonomic-classifications amplicon 16s ncbi-database custom-taxonomy custom-database metagenomic-classification centrifuge taxonomic-classification kraken2 gtdb ganon krakenuniq
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Jan 15, 2025 - Python
GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and metadata with focus on contamination detection.
visualization dashboard metagenomics bokeh microbiome amplicon interactive-visualizations contamination
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Feb 6, 2023 - Python
micca - MICrobial Community Analysis
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Feb 12, 2020 - Python
A reproducible and scalable workflow for Long Amplicon Consensus Analysis (LACA)
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Dec 18, 2024 - Python
process raw reads from ubiome
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Aug 6, 2018 - Python
[UNDER DEVELOPMENT] Pipeline for mapping and annotating T- and B-cell receptor gene rearrangement sequences
workflow bioinformatics rna-seq nextflow sequencing immunology amplicon tcr-repertoire bcr-repertoire airr-seq
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Jan 19, 2025 - Python
Targeted characterisation of short structural variation.
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Jan 12, 2022 - Python
Reference-based, heuristic algorithm for identification of potential contaminants in mothur-formatted OTU tables
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Apr 20, 2021 - Python
A python package to process UMI tagged mixed amplicon metabarcoding data.
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Mar 20, 2021 - Python
A tool for Nanopore Amplicon Real-Time (NART) analysis.
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Oct 5, 2023 - Python
A unified searchable database of 16S rRNA amplicon libraries
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Oct 14, 2018 - Python
Ultra Deep Amplicon Sequencing Analysis of NPM1 gene
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Nov 3, 2022 - Python
Sequence Read Archive Classification
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Oct 10, 2023 - Python
<pilot> in-silico amplicons optimised for phylogenetic signal
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Oct 18, 2024 - Python
Visualizes breakpoint graphs generated by AmpliconArchitect; simulates the effects of long read data on the graph
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Mar 22, 2019 - Python
PCAS: check the coverage of your primer pair before putting on amplicon sequencing
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Sep 25, 2020 - Python
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